TCONS_00039170 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039170
Unique Name	TCONS_00039170
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1875

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002030:25579..31492-
coding sequence from alignment at sc0002030:25579..31492-

transcript sequence

>TCONS_00039170 ID=TCONS_00039170|Name=TCONS_00039170|organism=Clytia hemisphaerica|type=transcript|length=1875bp
ATACGCCTGCCGTACCTAGAATTGTGACATTACTGAACTGttgaaaattt
aaccatgtTAGAACCCACATTCCTTAAAAATTCTAGATTTGCATTAGAGT
GCTTGCCCAGTTCATTTATTCCGTTCCATGGGCAGCcattaaaaatatgc
tcaaaatGTCAGTACAAAGCTAACTATGATGAACACCGTGGacttatttt
atgattttcaatttGACAGGTTTCGGAACAAGGTGAAACACACATCAAAG
AACTAGAAGATATCGAATCAGCCAACAACAAAAAGTTGATGTCCGAATAT
GAGAAATATCAAGAATTACAAACAAAGAGTCAACGCATGCAAGAAGATTA
TGAACGACAACTTCAACAAATGGAGGAGGCCAGAGAACATGCTCTTGAAG
AGTTGACTGAATATTACGAAAAGAAACTACAAGACAAGACATCAACTTTG
GAACAAGCGAACGAAGAATCACGTCAACATTTACGTGAATACGAAGAAAC
GAAAAAACAAATCGAAGAAGATGCGGATCGAGAAATTTTAGACATCAAGA
ATAAATATGAAAGGAAATTACGTGAAGAAAAAGAAGCTAACCTTCGATTG
AAAGGTGAAACTGGTATCATGAGACGAAAGTTTACAAGCCTACAGAAGGA
GATCGAAGATCACAAAGCAGAAATCCAACGTTTGCATGGTGAGGAGAGTA
AGTTGCAAGGAATCATTAAATCACTGGAGAAAGATATTTATGGTTTGAAG
AAAGAAATCCAAGAACGAGATGAAACCATCCAAGATAAGGAAAAACGTAT
TTACGATTTAAAGAAGAAGAATCAAGAATtggagaaattcaaatttgttt
tNAAAAACGTATTTACGATTTAAAGAAGAAGAATCAAGAATTGgagaaat
ttaaatttgttttggaTTACAAGATCAAAGAGTtgaagaagcaaattgaa
ccaCGTGAAAATGATATCAAAGAAATGAAAGAACAAATACAAGAGATGGA
AAGTGAATTGGAACGCTTCCACAAGCAGAACACAGGTTTAGAATTGAACA
TCGCTGAACTTCGATTGAAATTGAAAGCAACAGAGAAAGAATTGTACGGC
GAACGACAAACGGTTCACGACAAACAAGCCTTGGTCAAACGTTTCAAGAC
AGACTTACACAATGCTGCTGGCTTCATTCAAGaacctaaaaaattaaaag
aacacGTCAAAGAACTTTATGGAAAATACGTCAGCGATGATACGCCAGAG
GAAGCGAGTGTTGACTTAGATATACAAAAGGAATACGCACGTCAACGGGA
ACATTTGGAACGTAGTGTTGCTTCCTTACGTAAGAAGTTGGCAAAGGATA
CAGAAATTCATCGAGCTGACAATGTTCGCATCATGCAGGAGAACGTCTAC
TTGATTAAAGAAATAAACGATTTGCGACGTGAATTAAAGAACGCACGAAC
ACAAGTACACGATCTCGAAGCGTCTATTAACGTAATGCGTAAACATCAAA
ATGCCGGTGGGATGTCGACAACGTCTTTATTGGAGAGACGTGACAGTAGC
GATGAAGGTAACAAGACGACCGAACTGAACAAAATGATTGATCTACAGAA
AACAGAAATGCGACGGTTAAGAGCACAAATTGTCGATATGGAATCGAAAA
TAGCGGAACGCCCATCATCAGGAGGTGGGCGCCTCCCACCTTTGCCTGTT
CAGTAATACTAATGAATGAATTAACTgtttttaatttaatcaaattaata
tttttttatcccccaaataactattttcattttcttttcagaacCTTTTT
GTAAATATGACTGAATGATAAATTATGTAAATGTACCAAAGAATAATTCT
AAAAGACTACTGATAAATGCTAATA

Run BLAST on NCBI

protein sequence of TCONS_00039170-protein

>TCONS_00039170-protein ID=TCONS_00039170-protein|Name=TCONS_00039170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MKEQIQEMESELERFHKQNTGLELNIAELRLKLKATEKELYGERQTVHDK
QALVKRFKTDLHNAAGFIQEPKKLKEHVKELYGKYVSDDTPEEASVDLDI
QKEYARQREHLERSVASLRKKLAKDTEIHRADNVRIMQENVYLIKEINDL
RRELKNARTQVHDLEASINVMRKHQNAGGMSTTSLLERRDSSDEGNKTTE
LNKMIDLQKTEMRRLRAQIVDMESKIAERPSSGGGRLPPLPVQ

Run BLAST on NCBI

transcript from alignment at sc0002030:25579..31492-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039170 ID=TCONS_00039170|Name=TCONS_00039170|organism=Clytia hemisphaerica|type=transcript|length=5914bp|location=Sequence derived from alignment at sc0002030:25579..31492- (Clytia hemisphaerica)
ATACGCCTGCCGTACCTAGAATTGTGACATTACTGAACTGTTGAAAATTT
AACCATGTTAGAACCCACATTCCTTAAAAATTCTAGATTTGCATTAGAGT
GCTTGCCCAGTTCATTTATTCCGTTCCATGGGCAGCCATTAAAAATATGC
TCAAAATGTCAGTACAAAGCTAACTATGATGAACACCGTGGACTTATTTT
ATGATTTTCAATTTGACAGGTTTCGGAACAAGGTGAAACACACATCAAAG
AACTAGAAGATATCGAATCAGCCAACAACAAAAAGTTGATGTCCGAATAT
GAGAAATATCAAGAATTACAAACAAAGAGTCAACGCATGCAAGAAGATTA
TGAACGACAACTTCAACAAATGGAGGAGGCCAGAGAACATGCTCTTGAAG
AGTTGACTGAATATTACGAAAAGAAACTACAAGGTACCCCACTATTCTGC
ATAAGTCTTTTAAGAACTTTATTTTAATCAAGTATTAAAGTGTAGATTGT
ATTTCAGATTTCATGCTAAAGTTTTACTCCATGTGACTTTCATAAGCTAA
GTTGACAGTCATGCTTTAATCTGGTGTGCCTTTTTAACGATTTCGCTTTG
CTATACTAACTTTAGCAGGTCCAATAAGATTTTGGGTTTTATTTTTGAAC
AAAACTTGACCAATTACTTTCTTTACTTCAATTGATTGAAGCATGAGTAA
AAAGGCCAAATTAGATCTTTCGAACAAATATGTTTACTCTAGTTAGATCA
TTGAGTATCTAATCAGCTTATTTGAAATCAAACTTCTCTCTTCCTTCAAG
ACAAGACATCAACTTTGGAACAAGCGAACGAAGAATCACGTCAACATTTA
CGTGAATACGAAGAAACGAAAAAACAAATCGAAGAAGATGCGGATCGAGA
AATTTTAGACATCAAGAATAAATATGAAAGGAAATTACGTGAAGAAAAAG
AAGCTAACCTTCGATTGAAAGGTGAAACTGGTATCATGAGACGAAAGGTA
AGGCTTGACTCGATAGCTAAGGATTATAAAATGTTTCTCCGAACAGAATT
TCGTGATAGTTATCAAACAGGTGTGTTGCTCGCACGTAACGGTTCCGTTT
CGGTCCGAAACGAAATGAAGCCATTCTATTGGCTAGAAGTGACGTAAAGC
TTGAATTTAACCAATAGAATGGCTTCATTTCGTTTCGGAGTGAAACAGAA
CCGTAGCGTGTGAACGTGGCCTTCATCTCTTGTAGCAAAGTGACGTTTAA
CGATCGTTACTGCTACAAATCATCTCCACGCTATTAATCCGTAATAAAAT
ATACTTAAGAGCTCTTATGCAGCTATTTGAATACAACTATCAAACCTTAG
CGACTTAGACCATGTTCGCACGTGACGGTTCCGTTGCGAAACGAAATGAA
GCCGTTCTATTGGTTACATTCAAGTGTTACGTCACTTTTAACCAATAGAA
TGGCTCCATTCCATTTCCGAGCGAAACGGAACCGTCACGTGCGAACATGG
TTTTAGCTTCCCCTTTGAGGAGATTGTAAACTTGTAAATTCACATTACCA
GTATTTTTGAAAGCACTGTTTAGGGTTGGAAGGTATATTAAGATTGAAAC
CTTTAAACAGAAGGTGACCCTTTTTGGACCTACCTGGAGGCCCTATAAAT
TAACCATTCGTTCGTTAGTTAGTTCGTTTTTCAGGATCTTTTCCATTGAT
ATCTATATGTTCTCTCATTTGGCTAACTTTCACTATCAGGTAGATCCAAT
AAGCATCCAGCTTGTTTATTTATAGAATCCTAGCTGTTCCTTGTGAAAGT
ATAGAAGAATAAAGTGCAAAGTGTTAAACTGAAACATCCTATCATTTTAG
TTTACAAGCCTACAGAAGGAGATCGAAGATCACAAAGCAGAAATCCAACG
TTTGCATGGTGAGGAGAGTAAGTTGCAAGGAATCATTAAATCACTGGAGA
AAGATATTTATGGTTTGAAGAAAGAAATCCAAGAACGAGATGAAACCATC
CAAGATAAGGTATCGCATTCATTGAAATAGCGGTCGGTTATCGACCTGAA
AATATTCGAATTTTAAGTCCATATCGCCCAAGCAATGGTTATCCACTTTT
CCAAATCTTTTAGATGTACATTATGATAACAAATTTAGAGATGTCAACTT
TACAACGTTTTTTTTGGTGACCTTTGGTGGTGATTAAATTTAAGCACAAT
CTTAACATTGCGGAAGTGTCAAAATAAAATAAGTTTTGAAAAATCGGCTC
CAAAAACACATTCTAAAGCGTGATCTTGTAGGTCAATTTGCCTTGTTGCT
CCGTGTGTAAACTTAAAACATTCAATCTTTTGTTTGTAGGAAAAACGTAT
TTACGATTTAAAGAAGAAGAATCAAGAATTGGAGAAATTCAAATTTGTTT
TNAAAAACGTATTTACGATTTAAAGAAGAAGAATCAAGAATTGGAGAAAT
TTAAATTTGTTTTGGATTACAAGATCAAAGAGTTGAAGAAGCAAATTGAA
CCACGTGAAAATGATATCAAAGAAATGAAAGAACAAATACAAGAGGTTCA
TCATCTTTATTATCGTATTTGATCATCTTTTCTTGCAGGGGCCAAATTGA
ATTTTTCGGGGGGGGGATTAGACATTTCATTATGACACCTTGTCCCCATG
TATAGACTAGCAAGCTAGTCTGTTGATTAATCATGTCAGAGGGCGGCAAC
ATAAAGGCAACGGGCGTTTGCTAAAATAGGAACTGCATAGGAGAACGAGT
AAAAGTTGGTGAGAGGCTGCTGATTAACTGCTTCCAACCCTTGCTGCTGA
CAAAATTTCTTCCAACGCTTACCTAATTCATACGCTCACTTTTCCTACGT
GATACCGTTCCAGCACGACTGGTGTGCCAGACTACCCTATGTATGACTTT
TTGTGCATTTTCCTCAGGGAAATCCCAGAAACCACCACCGCCGAAATGTT
TTACTTCTGTCCGGCGATATTCTTGTCCATAGTTTTTGACCATATTATAC
TGTATGGTTTCACTAATTTTGATTTTATCTCCCCCTTAGATGGAAAGTGA
ATTGGAACGCTTCCACAAGCAGAACACAGGTTTAGAATTGAACATCGCTG
AACTTCGATTGAAATTGAAAGCAACAGAGAAAGAATTGTACGGCGAACGA
CAAACGGTAAGTTGACGTATGTCAGTCGTCCATCATGAAGTTTGTCGGTT
ATTTTGTGGACTTTAGCTTTTCCTTTTCAAACATTGCCAACATAGGTGTA
CTGCTAAAGAGTTTTTCTGAAAAAGCTCATTTAGCGAAGATTTATTTGCA
GTTAAGTTGTTCTTAAATATTCATTTATGGTATATTTTTTGAACAGCTTC
TGCCCAATAATTATTTCGTTGTTTCATCCGAGCTTCGCAAATACGTCTTA
AAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTT
TTCTGCCTATTGTTATATTATCCTGATATAAACAAAAAATATTTTTCTTT
CCCTCTTTCTGACCAATCTTGCTCCACATCCGTATCGATTCAATATCAAA
AAGCTTGTAAATTAAGGTTGGTGAGTAAACAAACGATATCACTCTTATTT
AAAAGCAAAACCTGGTACCTGGTAATGATAAAATATGTGTCGCTCTAAAC
CGTAAATCTCTGAACAATTTATTGCTTTATGTTTGCATTTTGTATTTTAT
TGTAAGGGTGCTGCATGTCACACGATGATAACCCAAATTCAATTGTTTTA
TTAAATCCAAAATATTACTAATCTCATTGTATATTATCGTCTACCCTGCC
ACACCACACTTTGCTCTAAGAGAATGCAGCGAGTGTTGGGTCCGAGGAGC
TTCTTCTAGCCAAAACATTTAAAATCGTGCTGCCTTCTACCTCTAAATGA
AAGCGAAAGCGAAAGCAAAAGCGACTGGGTTCTAATGTTTATGTTTTTGA
TTGGTGTATATTTTTGGTGAGATTGTTTTGCTTTAACCAATGAAAGCGCT
CAGAATTTCATTGAATATTAATGCCAGATCTTGAGTAGAAATTTAGCTGA
TATATTCTTATTCGATTCTCTTTGNAAGCGCTTAGAATTTCATTGAATAT
TAATGCCAGATCTGGAGTAGAAAGTTAGCTGATATATTCTTATTTGATTC
TCTTTATACCAGGTTCACGACAAACAAGCCTTGGTCAAACGTTTCAAGAC
AGACTTACACAATGCTGCTGGCTTCATTCAAGAACCTAAAAAATTAAAAG
AACACGTCAAAGAACTTTATGGAAAATACGTCAGCGATGATACGGTAAGA
GTTTGCACGGGTAGAGCCTATTCGTTTTCACAAAAATAGCAGCTCTATTT
AAGCGTTTTTAAACGTAAAAATTCGACCTTAAAAGCGAGTGAGCTACTTC
CAAAGGCTCTAATTAGCATATTTCCATGATGTTGAAGCGATTTAGAGGGG
TTAGAACCGGTTGGGAACAGTAGTTTTGCCAGAAAACCGGTTTTTAGGCC
TCCAAAGCTGCCTGGGCTTACAGTGTCCTATTTTAATTGCTCTCACTACG
ATCCAATAAGTCAGGTCTTTCTACTCCACCTTTAATGATAGAATATTTAG
TATTTTTCTTATCTTTGAGTCACGTTTACTTTATCCATTAACCAGATTTT
TTATTCTTCTTGCTCCCTTTTCACCTTCAGCCAGAGGAAGCGAGTGTTGA
CTTAGATATACAAAAGGAATACGCACGTCAACGGGAACATTTGGAACGTA
GTGTTGCTTCCTTACGTAAGAAGTTGGCAAAGGATACAGAAATTCATCGA
GCTGACAATGTTCGCATCATGCAGGTCAGTTTTGCTTCTCTCTCCTAATT
TTGACAACACTTAGAAACTGAATTAATGGGGTGTCGATGCCGTCAAAAAG
TTTCAGAAATATTTACTAAAATGCTGAAATGAAAAGCTTCGGCGACTTAT
AAGCTAACTTCGATAAATCCTTTGGGTGGGATAAGACATGAGAATACTNG
CTTCAGTTTCTGTTTGTTTTATTTTACCTGGTTAAACTGAAAATTTTAAC
TGAAAAGTTAGGAGATTGCTCAGTCGAAAATTAACTTTCAAAAACTCATT
TTGGGCTCAGAATTCAACTCTCTTATTTTCAAAGCTCGTTTAGTTTGGGT
AACCTCTTCATACAAGCATAATCTTTTTGTGTATTGAAACTTTATAGACC
TNATTATCATTGTGAATATGTAATTTTATAGCAATGAAATCTGTTTGAAA
ACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGGGTATTGGTTGGC
TAAAATTTGTCATACTTCGAGGCATATTTAAATCCAGATCAACAATTTGT
TTTGCGATGTATTTTTCTATGTTTTATTTGCTTTATACGTTATCAAAACT
TGTTTTAACTTACACCCTTTTTTGCAGGAGAACGTCTACTTGATTAAAGA
AATAAACGATTTGCGACGTGAATTAAAGAACGCACGAACACAAGTACACG
ATCTCGAAGCGTCTATTAACGTAATGCGTAAACATCAAAATGCCGGTGGG
ATGTCGACAACGTCTTTATTGGAGAGACGTGACAGTAGCGATGAAGGTAA
CAAGACGACCGAACTGAACAAAATGATTGATCTACAGAAAACAGAAATGC
GACGGTTAAGAGCACAAATTGTCGATATGGAATCGAAAATAGCGGAACGC
CCATCATCAGGAGGTGGGCGCCTCCCACCTTTGCCTGTTCAGTAATACTA
ATGAATGAATTAACTGTTTTTAATTTAATCAAATTAATATTTTTTTATCC
CCCAAATAACTATTTTCATTTTCTTTTCAGAACCTTTTTGTAAATATGAC
TGAATGATAAATTATGTAAATGTACCAAAGAATAATTCTAAAAGACTACT
GATAAATGCTAATA

Coding sequence (CDS) from alignment at sc0002030:25579..31492-

>TCONS_00039170 ID=TCONS_00039170|Name=TCONS_00039170|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at sc0002030:25579..31492- (Clytia hemisphaerica)
GAGAACGTCTACTTGATTAAAGAAATAAACGATTTGCGACGTGAATTAAA
GAACGCACGAACACAAGTACACGATCTCGAAGCGTCTATTAACGTAATGC
GTAAACATCAAAATGCCGGTGGGATGTCGACAACGTCTTTATTGGAGAGA
CGTGACAGTAGCGATGAAGGTAACAAGACGACCGAACTGAACAAAATGAT
TGATCTACAGAAAACAGAAATGCGACGGTTAAGAGCACAAATTGTCGATA
TGGAATCGAAAATAGCGGAACGCCCATCATCAGGAGGTGGGCGCCTCCCA
CCTTTGCCTGTTCAGTAACCAGAGGAAGCGAGTGTTGACTTAGATATACA
AAAGGAATACGCACGTCAACGGGAACATTTGGAACGTAGTGTTGCTTCCT
TACGTAAGAAGTTGGCAAAGGATACAGAAATTCATCGAGCTGACAATGTT
CGCATCATGCAGGTTCACGACAAACAAGCCTTGGTCAAACGTTTCAAGAC
AGACTTACACAATGCTGCTGGCTTCATTCAAGAACCTAAAAAATTAAAAG
AACACGTCAAAGAACTTTATGGAAAATACGTCAGCGATGATACGATGGAA
AGTGAATTGGAACGCTTCCACAAGCAGAACACAGGTTTAGAATTGAACAT
CGCTGAACTTCGATTGAAATTGAAAGCAACAGAGAAAGAATTGTACGGCG
AACGACAAACGATGAAAGAACAAATACAAGAGGAGAACGTCTACTTGATT
AAAGAAATAAACGATTTGCGACGTGAATTAAAGAACGCACGAACACAAGT
ACACGATCTCGAAGCGTCTATTAACGTAATGCGTAAACATCAAAATGCCG
GTGGGATGTCGACAACGTCTTTATTGGAGAGACGTGACAGTAGCGATGAA
GGTAACAAGACGACCGAACTGAACAAAATGATTGATCTACAGAAAACAGA
AATGCGACGGTTAAGAGCACAAATTGTCGATATGGAATCGAAAATAGCGG
AACGCCCATCATCAGGAGGTGGGCGCCTCCCACCTTTGCCTGTTCAGTAA
CCAGAGGAAGCGAGTGTTGACTTAGATATACAAAAGGAATACGCACGTCA
ACGGGAACATTTGGAACGTAGTGTTGCTTCCTTACGTAAGAAGTTGGCAA
AGGATACAGAAATTCATCGAGCTGACAATGTTCGCATCATGCAGGTTCAC
GACAAACAAGCCTTGGTCAAACGTTTCAAGACAGACTTACACAATGCTGC
TGGCTTCATTCAAGAACCTAAAAAATTAAAAGAACACGTCAAAGAACTTT
ATGGAAAATACGTCAGCGATGATACGATGGAAAGTGAATTGGAACGCTTC
CACAAGCAGAACACAGGTTTAGAATTGAACATCGCTGAACTTCGATTGAA
ATTGAAAGCAACAGAGAAAGAATTGTACGGCGAACGACAAACGATGAAAG
AACAAATACAAGAGGAGAACGTCTACTTGATTAAAGAAATAAACGATTTG
CGACGTGAATTAAAGAACGCACGAACACAAGTACACGATCTCGAAGCGTC
TATTAACGTAATGCGTAAACATCAAAATGCCGGTGGGATGTCGACAACGT
CTTTATTGGAGAGACGTGACAGTAGCGATGAAGGTAACAAGACGACCGAA
CTGAACAAAATGATTGATCTACAGAAAACAGAAATGCGACGGTTAAGAGC
ACAAATTGTCGATATGGAATCGAAAATAGCGGAACGCCCATCATCAGGAG
GTGGGCGCCTCCCACCTTTGCCTGTTCAGTAACCAGAGGAAGCGAGTGTT
GACTTAGATATACAAAAGGAATACGCACGTCAACGGGAACATTTGGAACG
TAGTGTTGCTTCCTTACGTAAGAAGTTGGCAAAGGATACAGAAATTCATC
GAGCTGACAATGTTCGCATCATGCAGGTTCACGACAAACAAGCCTTGGTC
AAACGTTTCAAGACAGACTTACACAATGCTGCTGGCTTCATTCAAGAACC
TAAAAAATTAAAAGAACACGTCAAAGAACTTTATGGAAAATACGTCAGCG
ATGATACGATGGAAAGTGAATTGGAACGCTTCCACAAGCAGAACACAGGT
TTAGAATTGAACATCGCTGAACTTCGATTGAAATTGAAAGCAACAGAGAA
AGAATTGTACGGCGAACGACAAACGATGAAAGAACAAATACAAGAGGAGA
ACGTCTACTTGATTAAAGAAATAAACGATTTGCGACGTGAATTAAAGAAC
GCACGAACACAAGTACACGATCTCGAAGCGTCTATTAACGTAATGCGTAA
ACATCAAAATGCCGGTGGGATGTCGACAACGTCTTTATTGGAGAGACGTG
ACAGTAGCGATGAAGGTAACAAGACGACCGAACTGAACAAAATGATTGAT
CTACAGAAAACAGAAATGCGACGGTTAAGAGCACAAATTGTCGATATGGA
ATCGAAAATAGCGGAACGCCCATCATCAGGAGGTGGGCGCCTCCCACCTT
TGCCTGTTCAGTAACCAGAGGAAGCGAGTGTTGACTTAGATATACAAAAG
GAATACGCACGTCAACGGGAACATTTGGAACGTAGTGTTGCTTCCTTACG
TAAGAAGTTGGCAAAGGATACAGAAATTCATCGAGCTGACAATGTTCGCA
TCATGCAGGTTCACGACAAACAAGCCTTGGTCAAACGTTTCAAGACAGAC
TTACACAATGCTGCTGGCTTCATTCAAGAACCTAAAAAATTAAAAGAACA
CGTCAAAGAACTTTATGGAAAATACGTCAGCGATGATACGATGGAAAGTG
AATTGGAACGCTTCCACAAGCAGAACACAGGTTTAGAATTGAACATCGCT
GAACTTCGATTGAAATTGAAAGCAACAGAGAAAGAATTGTACGGCGAACG
ACAAACGATGAAAGAACAAATACAAGAGGAGAACGTCTACTTGATTAAAG
AAATAAACGATTTGCGACGTGAATTAAAGAACGCACGAACACAAGTACAC
GATCTCGAAGCGTCTATTAACGTAATGCGTAAACATCAAAATGCCGGTGG
GATGTCGACAACGTCTTTATTGGAGAGACGTGACAGTAGCGATGAAGGTA
ACAAGACGACCGAACTGAACAAAATGATTGATCTACAGAAAACAGAAATG
CGACGGTTAAGAGCACAAATTGTCGATATGGAATCGAAAATAGCGGAACG
CCCATCATCAGGAGGTGGGCGCCTCCCACCTTTGCCTGTTCAGTAACCAG
AGGAAGCGAGTGTTGACTTAGATATACAAAAGGAATACGCACGTCAACGG
GAACATTTGGAACGTAGTGTTGCTTCCTTACGTAAGAAGTTGGCAAAGGA
TACAGAAATTCATCGAGCTGACAATGTTCGCATCATGCAGGTTCACGACA
AACAAGCCTTGGTCAAACGTTTCAAGACAGACTTACACAATGCTGCTGGC
TTCATTCAAGAACCTAAAAAATTAAAAGAACACGTCAAAGAACTTTATGG
AAAATACGTCAGCGATGATACGATGGAAAGTGAATTGGAACGCTTCCACA
AGCAGAACACAGGTTTAGAATTGAACATCGCTGAACTTCGATTGAAATTG
AAAGCAACAGAGAAAGAATTGTACGGCGAACGACAAACGATGAAAGAACA
AATACAAGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023594	XLOC_023594	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00039170-protein	TCONS_00039170-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002030	supercontig	sc0002030:25579..31492 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.6582	9.52404	2.59288	1.22387	60.7613	45.0616	30.1278	33.1198	17.8008	17.7192	15.5721	15.4875	3.28737	3.75333	3.54733	5.088	7.008	7.13605	4.55495	4.849	6.21733	6.2704	10.378	9.59233	214.843	111.526	6.89775	6.95942	6.56333	8.27327

Blast

[Close]

BLAST of TCONS_00039170 vs. Swiss-Prot (Human)
Match: CFA57 (Cilia- and flagella-associated protein 57 OS=Homo sapiens GN=CFAP57 PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 2.894e-84
Identity = 158/266 (59.40%), Postives = 200/266 (75.19%), Query Frame = 3

Query:  855 KRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRENDIKEMKEQIQEMESELERFHKQNTGLELNIAELRLKLKATEKELYGERQTVHDKQALVKRFKTDLHNAAGFIQEPKKLKEHVKELYGKYVS-DDTPEEASVDLDIQKEYARQREHLERSVASLRKKLAKDTEIHRADNVRIMQENVYLIKEINDLRRELKNARTQVHDLEASINVMRK--HQNAGGMSTTSLLERRDSSDEGNKTTELNKMIDLQKTEMRRLRAQIVDME 1643
            KRIYDLKKKNQEL KFKFVLDYKIKELKKQIEPREN+I+ MKEQIQEME+ELE FHKQNT LELNI EL  KL+AT++E+  ERQ   D +ALVKRFKTDLHN   +IQEP+ LKE V+ L+ KYV   D  E A ++ D+Q+EY RQREHLER++A+L+KK+ K+ E+HR D VRIMQENV LIKEIN+LRRELK  R+QV+DLEA++ + +K   Q       +  +     +   N+  E  ++I++Q+ E++RLR QI + E
Sbjct:  957 KRIYDLKKKNQELGKFKFVLDYKIKELKKQIEPRENEIRVMKEQIQEMEAELENFHKQNTQLELNITELWQKLRATDQEMRRERQKERDLEALVKRFKTDLHNCVAYIQEPRLLKEKVRGLFEKYVQRADMVEIAGLNTDLQQEYTRQREHLERNLATLKKKVVKEGELHRTDYVRIMQENVSLIKEINELRRELKFTRSQVYDLEAALKLTKKVRPQEVSETEPSRDMLSTAPTARLNEQEETGRIIEMQRLEIQRLRDQIQEQE 1222

HSP 2 Score: 260.766 bits (665), Expect = 1.900e-74
Identity = 149/201 (74.13%), Postives = 176/201 (87.56%), Query Frame = 1

Query:  247 KELEDIESANNKKLMSEYEKYQELQTKSQRMQEDYERQLQQMEEAREHAXXXXXXXXXXXXQDKTSTLEQANEESRQHLREYEETKKQIEEDADREILDIKNKYERKLREEKEANLRLKGETGIMRRKFTSLQKEIEDHKAEIQRLHGEESKLQGIIKSLEKDIYGLKKEIQERDETIQDKEKRIYDLKKKNQELEKFKFV 849
            +EL+D+E  NN+KL+ EYEKYQELQ KSQRMQE+YE+QL+  +E +  ALEELTE+YE KLQ+KT+ LE+A E+ RQ LRE+EETKKQIEED DREI DIK KYE+KLR+EKE+NLRLKGETGIMR+KF+SLQKEIE+   +I+ L GE+ KLQG+IKSLEKDI GLK+EIQERDETIQDKEKRIYDLKKKNQEL KFKFV
Sbjct:  775 RELQDMECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTTLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEKKLRDEKESNLRLKGETGIMRKKFSSLQKEIEERTNDIETLKGEQMKLQGVIKSLEKDIQGLKREIQERDETIQDKEKRIYDLKKKNQELGKFKFV 975

The following BLAST results are available for this feature:

BLAST of TCONS_00039170 vs. Swiss-Prot (Human)

BLAST of TCONS_00039170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CFA57	2.894e-84	59.40	Cilia- and flagella-associated protein 57 OS=Homo ...	[more]

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TCONS_00039170 (transcript) - C. hemisphaerica