TCONS_00039154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039154
Unique NameTCONS_00039154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039154 ID=TCONS_00039154|Name=TCONS_00039154|organism=Clytia hemisphaerica|type=transcript|length=454bp
CTAGTCGTGTCagtaaaaagataaaatacTAGACTCTAGACTGTCATATC
TTATGtcttttcaaattaatttccAGTCTACCTAAAACTGAGTCAAGTCA
TTTATTTAAATTATTGCTCCTTTTTTTTTAGAAGATAAATAAGTAATAAA
ATGCCAGCTAATGGAAAAGGTCCTCCTTATCAGGATGGTGAGTTGCTGGA
TATGCTAATGAATCGACAACACCCACTACAACACCCACAACTGCATTCAC
CAGCATCACCAGCATCTGATGCTTCCACAATTCCATATTATGgtaatgaa
gatgaagaaggtgtTACTGCAGAATACGTTCCCTACGAGCCAGAACCAGT
AGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAG
TTGATGATCAGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTT
GATG
Run BLAST on NCBI

protein sequence of TCONS_00039154-protein

>TCONS_00039154-protein ID=TCONS_00039154-protein|Name=TCONS_00039154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MPANGKGPPYQDGELLDMLMNRQHPLQHPQLHSPASPASDASTIPYYGNE
DEEGVTAEYVPYEPEPVVDDQPEPVVDDQPEPVVDDQPEPVVDDQPEPVV
D
Run BLAST on NCBI

transcript from alignment at sc0002027:4677..5498-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039154 ID=TCONS_00039154|Name=TCONS_00039154|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0002027:4677..5498- (Clytia hemisphaerica)
CTAGTCGTGTCAGTAAAAAGATAAAATACTAGACTCTAGACTGTCATATC
TTATGTCTTTTCAAATTAATTTCCAGTCTACCTAAAACTGAGTCAAGTCA
TTTATTTAAATTATTGCTCCTTTTTTTTTAGAAGATAAATAAGTAATAAA
ATGCCAGCTAATGGAAAAGGTCCTCCTTATCAGGATGGTGAGTTGCTGGA
TATGCTAATGAATCGACAACACCCACTACAACACCCACAACTGCATTCAC
CAGCATCACCAGCATCTGATGCTTCCACAATTCCATATTATGTAAAGTAT
TCGTTAGTTACTACTTAAATCGTATTAAACTTTGTGAGATTAAACTTCGC
ATGATTAAATTTCGCAAGGTCAAAAATTTGCGAAATTTTTTGGATTTGAT
TTTGCAAATGAGCAGTTCGAAAAATTTCGCGTGGATTTAATTTCACAAAT
GAGCAACTGCCAAACCATTTGGCGAGTTTCAATTACGCAAAAAGGGTGAA
AATTCACGTAAACGCAAAATTTTATCTTGCCAAGTTTAATACGATTTAAA
GTAATTTAAGAGTAATGTTTAAGATTAAGTATTTGTTTCAGTGAAAGTTA
CTGTCCCTAATAACGCAGCAGTTTTTCGAAAAGAAATTGAAAATCACTTA
ACTATTTAGGGTAATGAAGATGAAGAAGGTGTTACTGCAGAATACGTTCC
CTACGAGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATG
ATCAGCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGAT
CAGCCAGAACCAGTAGTTGATG

Coding sequence (CDS) from alignment at sc0002027:4677..5498-

>TCONS_00039154 ID=TCONS_00039154|Name=TCONS_00039154|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0002027:4677..5498- (Clytia hemisphaerica)
GGTAATGAAGATGAAGAAGGTGTTACTGCAGAATACGTTCCCTACGAGCC
AGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAGCCAG
AACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAGCCAGAA
CCAGTAGTTGATATGCCAGCTAATGGAAAAGGTCCTCCTTATCAGGATGG
TGAGTTGCTGGATATGCTAATGAATCGACAACACCCACTACAACACCCAC
AACTGCATTCACCAGCATCACCAGCATCTGATGCTTCCACAATTCCATAT
TATGGTAATGAAGATGAAGAAGGTGTTACTGCAGAATACGTTCCCTACGA
GCCAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAGC
CAGAACCAGTAGTTGATGATCAGCCAGAACCAGTAGTTGATGATCAGCCA
GAACCAGTAGTTGATATGCCAGCTAATGGAAAAGGTCCTCCTTATCAGGA
TGGTGAGTTGCTGGATATGCTAATGAATCGACAACACCCACTACAACACC
CACAACTGCATTCACCAGCATCACCAGCATCTGATGCTTCCACAATTCCA
TATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023581XLOC_023581Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039154-proteinTCONS_00039154-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039154-exon-sc0002027-1575043694:5208..5498TCONS_00039154-exon-sc0002027-1575043694:5208..5498Clytia hemisphaericaexon
TCONS_00039154-exon-sc0002027-1575043694:4677..4839TCONS_00039154-exon-sc0002027-1575043694:4677..4839Clytia hemisphaericaexon
TCONS_00039154-exon-sc0002027-1510915933:5208..5498TCONS_00039154-exon-sc0002027-1510915933:5208..5498Clytia hemisphaericaexon
TCONS_00039154-exon-sc0002027-1510915933:4677..4839TCONS_00039154-exon-sc0002027-1510915933:4677..4839Clytia hemisphaericaexon
TCONS_00039154-exon-sc0002027-1491911889:5208..5498TCONS_00039154-exon-sc0002027-1491911889:5208..5498Clytia hemisphaericaexon
TCONS_00039154-exon-sc0002027-1491911889:4677..4839TCONS_00039154-exon-sc0002027-1491911889:4677..4839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002027supercontigsc0002027:4677..5498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.384132	3.86906	1.75444	1.82708	1.31551	2.34201	0.867639	0.438348	1.29892	3.60705	0	0.0137269	0	0	0	0	0	0	0	0	0.659071	4.35864	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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