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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039151 ID=TCONS_00039151|Name=TCONS_00039151|organism=Clytia hemisphaerica|type=transcript|length=1143bp
TACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGCACGACGAACAAGAC
GGCGGCGGTTGAACACACGCGCATGGAGCAGATGCCAAGCACGACGCCAA
GAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCAATAAGATTAATGAG
GATGGTCGAAAAGAACCAGATCTTaacaaatttaaagatttttcacaCTC
CTTCAAActtgaatcaaaaacaaaaaagactgAAGTGAAGACAGACACGA
CCGCTTCCACAACACATGTGGCTGTTGCAACCCCATCTTCCACGACCAAA
GACAGTAAGGCGGTCGTCGAAGAAACAATCATGAAATCTGTTGCAAATGT
TGCTTTATCTGCACCAGTTCCTGAAACTGTTCTTTTATCTAAACCCAACA
CCAAAGACGTCTCCGCAAGACCTTCCATCACAACCACGATTTCTACAACA
ACTACTACAACCTCTGCAACACGAGTCGCGACATCTGCAACCGACACTAA
GAACGTCTCAACAACAACCCCGACAGTTTCAACGACAACTACGACATCTG
TCGTCTCTAGTGTTGTCAGTACCGTCACAGCCTCCTCTACGACACCTTCC
AAGTAAGTAAAACTAATCAGAGAGGAGTATATTTGATTCTAGAATACTAG
AATAAGAGTAATTTATTAACTCTTTCGGAGGCAATTTTTCGAGGGGGGGG
GGCGAATTTCTTAGAATCaatgatatttttaaagatatatttctatttct
tctttctttttggccatgtccgtccgtccgtccgttcgttcgttcgttcg
tctgttgccagcttttttcaggattggctcattagttttttttgattttt
ggcataaagatgcaaaatggcaatgcccaaaatgtgacggagcccgattt
tcgaaaaaaaacatttccggcggtaaataccggaaatatgccggaaaaac
tgtttttttggcattttcacgagattttatcattagttttttctgatttt
ttgctcaaagatgcgtattaacaatgcccaaaacatggccgagtccaatt
tttgagaaagaattttttcggtcgaaaatgccggaaatatgccggaaatc
gccgtttttctggattttcattggatttttttcttataattgg Run BLAST on NCBI transcript from alignment at sc0002026:9..4172- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039151 ID=TCONS_00039151|Name=TCONS_00039151|organism=Clytia hemisphaerica|type=transcript|length=4164bp|location=Sequence derived from alignment at sc0002026:9..4172- (Clytia hemisphaerica)
TACGCCCCGAAAGCTTCGTATAGTAGTCGACTAAGCACGACGAACAAGAC
GGCGGCGGTTGAACACACGCGCATGGAGCAGATGCCAAGCACGACGCCAA
GAGGACAGGGCGAAGTCATCAAGTTCGGAAAAATCAATAAGATTAATGAG
GATGGTATGGCTTTTTTTTGTCCGTAACTTTTTAACAACTCTTTTTGTGA
ATCAGAGCAGGTCCGATGCAGTACTATTACAGGTTTAGCGTAAAGTTTTC
CCAGAAATAAACGGATTTATGCCAAGAAAGGATTTCAAAAGAGAAAGAAT
TCTCGTAAAAAACGCTAATTTCATACCTTCGCACCTCGAAGATAAGTTTT
GTCAGAGTACTGTGTTAACAAGGATCGCAAGATTAACAGTTTAAAATGGT
GCCAGATCATTTTTGTCCATAATCGAAGATATAGTCGATATTTTACAGCA
ATATATGAACTCTAACGCGGCGTTGGAAGTGGTATAGGTTCGTGGGGTTG
GCGCTTTTAGACGTCTCAGCCATCGTTCCAGCCATTGGGCCATTCCATTT
TATCTCCATACAGGAGGGGGGGGTGGACAAACATTTCCAGGGGGTAACCT
GAGAAGAATTTCCAGGGGGGGTCTAAAGGAGTGTTTTTTTTTCCAGGGGG
TAAATATAGTTATTCTAAAATTTGGACAAGACAAGTTTTATTTCGTCCAC
TGTCACTTTAAAGTATAAAATAAAACTTTTCCGAGGGTTATTTTGCAAAT
TTTGCTATTTTCCAGCGGGTATCCTCACATTTCCAAGAATTTATTCTTGA
CTTTAAAAGGTTCGTCCCCCCCCCCCCCCTACCCTGTATCAATTTTTAAA
TGGAACAGCCCATTGGTGTCGTTGATTTTTTCTGAAGATGATCCTTCTTT
TCTTTACTTGCAGGTCGAAAAGAACCAGATCTTAACAAATTTAAAGATTT
TTCACACTCCTTCAAAGTAAGTAATGCATGAATGCTTCTGCACGCTTTTT
TTTTATAAGAATATGTTTTATAAGAATATCAGGGTGCTAAATTTACCAAA
TCGTAAGAATACCCTGAGAATACCCTCTAGGGTGAATTTCACAGAATTTG
ATAAGAATACAATCATTTTGTATTTGGTTGACAGAAAAAGCTGCTTCCTT
TGTTAGACTTGAATTTGAACTTTGAGGCAGAAATGTAATTTTAGCTCCAA
ATGTTCATTCAAAAGCCCCAAAACTCTCAAATTGATCATTTCTCATGTTT
GTAAAAAGTCAAGTCTAAAAAAGTAAGAATACGTTAAGAATACTTGACCC
TCATTCAAATTACACAATTCTTATTAAAAGAAAGCGCGCATTTTACCGAT
GGTTTGTTTGTATGTCAAAATTTGGAGATTTATTTGGGAACAGTTGAGTA
GAGTGTCCACTTTTTATGTTCTTTTTGCCATATTGCAAATAAAACATTGG
TTTTTAATTACAGGCATATGTCTAGATTTATTTTTTTGCGATAAACAAAT
TTGCGATGAACTGAAACCCAGCCTTAGGTTAAGCGAGTAGTGATTTCCCT
AGACTATAGTCTATTTCTGACTGAACTGTGGTGCTTTTTGATGACTCTGA
TAGCGCTGAGTCCAGTGAAGTAGACTAGAGGACTTCGCCATCTTGATTTT
GTTCACTTTCGTTTTCAAAAATTATATGAAAACATCAAAGCAATAAAATT
TTTTCTGAAAATCCATTACAGTTTATGAAATTATAATAAAAACAAGAAAA
TACCTCCAAAATTTGAAAAAAATTGGTCTATCGGTCATGGTTTTCTGTTT
GTTTTTCTTCAAAAAGGGACTGTATCTAGTGGTACGGATTTGCTACCACC
TCAAGCAAAGCCAAAAATTGGAGCCTGCCAAATTACATCGGGCCACTTAT
CAGCGCCATCCAGTCTATCAAAAAGCTTTAATTGACCCCCGGGTTATGAT
TTCCCAGCCTTTCTTCAAAAAAAGTAAATAAAGTTGGAAAACTTTCGTTC
ATGCCAAGGAGATCTGGAGGTATCTACGACAGTTAGTCAGAAAATTGACT
TGTCAAAGCTTGGATCAAGTCGGTTCCAACAAGTTACCATAAAAGCTACC
CTCAGAAAAACACACAGTTTCTATTGCATCTTTAGCTACCACCCACCCCT
TCATTAGTCTGAATATTATTAAAAAGAGAGTTTTTAGAAGCTCCCAAAAC
TATACGACAAAAATTCAAAATAAATTTCGAATATTCTAATACTTCGACAT
ACCTTATNACAAAAATTCAAAATAAATTTCGAATATTCTAATACTTCGAC
ATACCTTATCGCCCCTGTTTACGCTGGCCCTTATTGGTGTTATTTTCTCG
TCGCTGGAGAAATAAGGGCCGGCGTAAGGGGCTGGATTTAAATTAAAGAC
GACCTAAAAAGGACAGAAATTGAGTTTTGATGTAATAAGGGCCGGCGTTG
AAGGGGTCGGCGTTAAATTAGGACTGGCGTAAAAAGGACTGGCGTAAAAA
GATGTCGATAAGGTAGCTGCTTTCAACCAGTAAAATCCAGGTCTTCGGTA
TCGGGGGAATTGATATCTCACAAAATTTTCTTATAATTTTAGCTTGAATC
AAAAACAAAAAAGACTGAAGTGAAGACAGACACGACCGCTTCCACAACAC
ATGTGGCTGTTGCAACCCCATCTTCCACGACCAAAGACAGTAAGGCGGTC
GTCGAAGAAACAATCATGAAATCTGTTGCAAATGTTGCTTTATCTGCACC
AGGTATATAGTACCTATATAGTATAGGCGCAATTACCCCTCTCTTCTGTA
AATCTACAACGGTCTACCCAGAATTTCTAATGTTTTAACAAGTAGGATGC
TTGTTTTTGCAGGACATTGTTTTCATTCAAAACATGAAGTAATCTCAGAT
CTTTTACTTTGGTGTCCTGTCGGTCCTAAACGATCGAGGAAACGAACGTT
TCTCGACACTCTAAAGCGGGAAACAGGCCTGGAAACGCTAGAGCTCGGAA
CAGTAATGGCTGATCGTGAACTTTGGAGAGAGGGTTATTGTTTGTTTCTG
ACCTAGGTCCTCTCGGACCTAGATCGAAGGATGATGATGATGATGATATA
GTCCCTACCCCCATTGATGTCATTTCTACAGCGGAGTGTATTTTTTAAGT
CTTTTCAATAATTAATATTGAACTATTTCATTCGGTACCAATGACATAAT
TTGTATTAAATAATTCATATTTTGTATAGAATTCTGAGTCTGATACGGAC
TAGTACAATAGTCGTTGAGAAAGACTCATTTTAAGTAAAATACAAAACAA
ACTCAAAAGTAATGATGGTGCATGGTCCGTTTTCCTCAAAAAGTGTTGAT
TTAAAATTTCAACCTTTTTTTTCTGTCTATGTTTACAGTTCCTGAAACTG
TTCTTTTATCTAAACCCAACACCAAAGACGTCTCCGCAAGACCTTCCATC
ACAACCACGATTTCTACAACAACTACTACAACCTCTGCAACACGAGTCGC
GACATCTGCAACCGACACTAAGAACGTCTCAACAACAACCCCGACAGTTT
CAACGACAACTACGACATCTGTCGTCTCTAGTGTTGTCAGTACCGTCACA
GCCTCCTCTACGACACCTTCCAAGTAAGTAAAACTAATCAGAGAGGAGTA
TATTTGATTCTAGAATACTAGAATAAGAGTAATTTATTAACTCTTTCGGA
GGCAATTTTTCGAGGGGGGGGGGCGAATTTCTTAGAATCAATGATATTTT
TAAAGATATATTTCTATTTCTTCTTTCTTTTTGGCCATGTCCGTCCGTCC
GTCCGTTCGTTCGTTCGTTCGTCTGTTGCCAGCTTTTTTCAGGATTGGCT
CATTAGTTTTTTTTGATTTTTGGCATAAAGATGCAAAATGGCAATGCCCA
AAATGTGACGGAGCCCGATTTTCGAAAAAAAACATTTCCGGCGGTAAATA
CCGGAAATATGCCGGAAAAACTGTTTTTTTGGCATTTTCACGAGATTTTA
TCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCC
AAAACATGGCCGAGTCCAATTTTTGAGAAAGAATTTTTTCGGTCGAAAAT
GCCGGAAATATGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGGATTTT
TTTCTTATAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039151-exon-sc0002026-1575043694:4019..4172 | TCONS_00039151-exon-sc0002026-1575043694:4019..4172 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1575043694:3207..3259 | TCONS_00039151-exon-sc0002026-1575043694:3207..3259 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1575043694:1421..1580 | TCONS_00039151-exon-sc0002026-1575043694:1421..1580 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1575043694:9..784 | TCONS_00039151-exon-sc0002026-1575043694:9..784 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1510915933:4019..4172 | TCONS_00039151-exon-sc0002026-1510915933:4019..4172 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1510915933:3207..3259 | TCONS_00039151-exon-sc0002026-1510915933:3207..3259 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1510915933:1421..1580 | TCONS_00039151-exon-sc0002026-1510915933:1421..1580 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1510915933:9..784 | TCONS_00039151-exon-sc0002026-1510915933:9..784 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1491911889:4019..4172 | TCONS_00039151-exon-sc0002026-1491911889:4019..4172 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1491911889:3207..3259 | TCONS_00039151-exon-sc0002026-1491911889:3207..3259 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1491911889:1421..1580 | TCONS_00039151-exon-sc0002026-1491911889:1421..1580 | Clytia hemisphaerica | exon |
| TCONS_00039151-exon-sc0002026-1491911889:9..784 | TCONS_00039151-exon-sc0002026-1491911889:9..784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002026 | supercontig | sc0002026:9..4172 - |
Blast
The following BLAST results are available for this feature:
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