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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039146 ID=TCONS_00039146|Name=TCONS_00039146|organism=Clytia hemisphaerica|type=transcript|length=1358bp
TgttgaaaatgaaattcaaaccaaatggaCTGAATGTACCACAAAAGATT
ATAAGCACTTCTCAGAAATTGGTATGGCTGCTTATACGAACCACCTACCA
GTCAAGAAAAAGACCAACGACAGTGAACCCATATCAATAACAAACGCACG
CAGACAGGTCTTACAGTCCAAAATTACCGACCTTCAGAGGAACCTGACCA
ATCTGAAAAACGTTTATGTCAGAGAAGAAGAAAGAAGGATAACTCATATA
CTCAACCAGGCAAACAAATCAGAATCTACTGATGGTTTAAGAAAATGCTT
GGAAAATTGTCAAGGAGTTAAGCGGGAAGAAAAAAGCAGCATCTGTCTCT
ATCAAAAGTGACGACCCAAAAAAGTCATGGAAAGATCATTTTGAAACCCT
TCTAAATAATATTCCCGAAAACGTAAAGGGTGAGGCCAATGTTGAAATTG
ATCCAGTTTTCTAATTGAACGAGGAAATCAATATTGATGATTTTACTCTT
GACGAAGTCAACAAGGCACTTAAACAGATGAAAAACGGAAAAGCTGCTGG
AGTTGATGGTTTACCTCTGGAATTCTGGAAACTGGATTCTCTCAGTACTG
TTCTTCTACACTTCTGCAATGCAACCTTAAACGGTGAGCGCCCAGATGAA
TGGGGCCTATCGTGTATTGTACCTGTGCCCAAAAAGGGTGATTTAACCAA
AGTTGACAACTATCGCGGTATTAGTCTAACTCAAGTTGCTGCCAAACTTT
ACAACAGACTAATATTAAACAGAATTCGCCCTGAGATTGATCAAAAGCTT
CGtttcaatcaaaatggttttcgtCCGTCCCGATCGACATCATCACAAGT
TCTTGCCCTTCGGCGCCTTGTAGAAGAAGTCAACAACCATAACGTTGAAG
CTGTATTAACATTCATCGGCTTTAAAGAGGCGTTTGATAGTATTAACAGA
GAGTCAATGTTCAAAATCCTCCTAGCCTACGGCATTCCAGATAAGCATGT
TAATGCAATCCAGATTATGTATACCAATAACAGAGCCAATGTAATGACAT
CTGAAGGAGAAACTGAATTCTTTGATGTTGTAACTGGTGTGCTTCAAGGT
GATCCATTAGCACCTTACCTCTTTATTGTTGTGCTCGATTATGCTCTGAG
GACAGCCATTACTTCTGAAGATGGAGTCACTATTGAAAAACGCAGAAGTA
GACGACATCATACCGAGAAATTAGCAGATCTTGACTTTGCAGACGATATC
TCTTATAAATGAAACAGTAATCGAAGCTGAAAACCTCCTACACAAGCTAG
AGATATCAACTCAATCTATCGGTCTCTTTCTCAACGCTAAGAAAACCAAA
TATATGCA Run BLAST on NCBI protein sequence of TCONS_00039146-protein >TCONS_00039146-protein ID=TCONS_00039146-protein|Name=TCONS_00039146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MKNGKAAGVDGLPLEFWKLDSLSTVLLHFCNATLNGERPDEWGLSCIVPV
PKKGDLTKVDNYRGISLTQVAAKLYNRLILNRIRPEIDQKLRFNQNGFRP
SRSTSSQVLALRRLVEEVNNHNVEAVLTFIGFKEAFDSINRESMFKILLA
YGIPDKHVNAIQIMYTNNRANVMTSEGETEFFDVVTGVLQGDPLAPYLFI
VVLDYALRTAITSEDGVTIEKRRSRRHHTEKLADLDFADDISYK Run BLAST on NCBI transcript from alignment at sc0002023:4..1361 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039146 ID=TCONS_00039146|Name=TCONS_00039146|organism=Clytia hemisphaerica|type=transcript|length=1358bp|location=Sequence derived from alignment at sc0002023:4..1361 (Clytia hemisphaerica)
TGCATATATTTGGTTTTCTTAGCGTTGAGAAAGAGACCGATAGATTGAGT
TGATATCTCTAGCTTGTGTAGGAGGTTTTCAGCTTCGATTACTGTTTCAT
TTATAAGAGATATCGTCTGCAAAGTCAAGATCTGCTAATTTCTCGGTATG
ATGTCGTCTACTTCTGCGTTTTTCAATAGTGACTCCATCTTCAGAAGTAA
TGGCTGTCCTCAGAGCATAATCGAGCACAACAATAAAGAGGTAAGGTGCT
AATGGATCACCTTGAAGCACACCAGTTACAACATCAAAGAATTCAGTTTC
TCCTTCAGATGTCATTACATTGGCTCTGTTATTGGTATACATAATCTGGA
TTGCATTAACATGCTTATCTGGAATGCCGTAGGCTAGGAGGATTTTGAAC
ATTGACTCTCTGTTAATACTATCAAACGCCTCTTTAAAGCCGATGAATGT
TAATACAGCTTCAACGTTATGGTTGTTGACTTCTTCTACAAGGCGCCGAA
GGGCAAGAACTTGTGATGATGTCGATCGGGACGGacgaaaaccattttga
ttgaaaCGAAGCTTTTGATCAATCTCAGGGCGAATTCTGTTTAATATTAG
TCTGTTGTAAAGTTTGGCAGCAACTTGAGTTAGACTAATACCGCGATAGT
TGTCAACTTTGGTTAAATCACCCTTTTTGGGCACAGGTACAATACACGAT
AGGCCCCATTCATCTGGGCGCTCACCGTTTAAGGTTGCATTGCAGAAGTG
TAGAAGAACAGTACTGAGAGAATCCAGTTTCCAGAATTCCAGAGGTAAAC
CATCAACTCCAGCAGCTTTTCCGTTTTTCATCTGTTTAAGTGCCTTGTTG
ACTTCGTCAAGAGTAAAATCATCAATATTGATTTCCTCGTTCAATTAGAA
AACTGGATCAATTTCAACATTGGCCTCACCCTTTACGTTTTCGGGAATAT
TATTTAGAAGGGTTTCAAAATGATCTTTCCATGACTTTTTTGGGTCGTCA
CTTTTGATAGAGACAGATGCTGCTTTTTTCTTCCCGCTTAACTCCTTGAC
AATTTTCCAAGCATTTTCTTAAACCATCAGTAGATTCTGATTTGTTTGCC
TGGTTGAGTATATGAGTTATCCTTCTTTCTTCTTCTCTGACATAAACGTT
TTTCAGATTGGTCAGGTTCCTCTGAAGGTCGGTAATTTTGGACTGTAAGA
CCTGTCTGCGTGCGTTTGTTATTGATATGGGTTCACTGTCGTTGGTCTTT
TTCTTGACTGGTAGGTGGTTCGTATAAGCAGCCATACCAATTTCTGAGAA
GTGCTTATAATCTTTTGTGGTACATTCAGtccatttggtttgaatttcat
tttcaacA Coding sequence (CDS) from alignment at sc0002023:4..1361 >TCONS_00039146 ID=TCONS_00039146|Name=TCONS_00039146|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0002023:4..1361 (Clytia hemisphaerica)
TCATTTATAAGAGATATCGTCTGCAAAGTCAAGATCTGCTAATTTCTCGG
TATGATGTCGTCTACTTCTGCGTTTTTCAATAGTGACTCCATCTTCAGAA
GTAATGGCTGTCCTCAGAGCATAATCGAGCACAACAATAAAGAGGTAAGG
TGCTAATGGATCACCTTGAAGCACACCAGTTACAACATCAAAGAATTCAG
TTTCTCCTTCAGATGTCATTACATTGGCTCTGTTATTGGTATACATAATC
TGGATTGCATTAACATGCTTATCTGGAATGCCGTAGGCTAGGAGGATTTT
GAACATTGACTCTCTGTTAATACTATCAAACGCCTCTTTAAAGCCGATGA
ATGTTAATACAGCTTCAACGTTATGGTTGTTGACTTCTTCTACAAGGCGC
CGAAGGGCAAGAACTTGTGATGATGTCGATCGGGACGGacgaaaaccatt
ttgattgaaaCGAAGCTTTTGATCAATCTCAGGGCGAATTCTGTTTAATA
TTAGTCTGTTGTAAAGTTTGGCAGCAACTTGAGTTAGACTAATACCGCGA
TAGTTGTCAACTTTGGTTAAATCACCCTTTTTGGGCACAGGTACAATACA
CGATAGGCCCCATTCATCTGGGCGCTCACCGTTTAAGGTTGCATTGCAGA
AGTGTAGAAGAACAGTACTGAGAGAATCCAGTTTCCAGAATTCCAGAGGT
AAACCATCAACTCCAGCAGCTTTTCCGTTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039146-exon-sc0002023-1491911889:4..1361 | TCONS_00039146-exon-sc0002023-1491911889:4..1361 | Clytia hemisphaerica | exon |
| TCONS_00039146-exon-sc0002023-1510915933:4..1361 | TCONS_00039146-exon-sc0002023-1510915933:4..1361 | Clytia hemisphaerica | exon |
| TCONS_00039146-exon-sc0002023-1575043694:4..1361 | TCONS_00039146-exon-sc0002023-1575043694:4..1361 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002023 | supercontig | sc0002023:4..1361 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00039146 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-18 Identity = 68/233 (29.18%), Postives = 115/233 (49.36%), Query Frame = 3
Query: 495 TLDEVNKALKQMKNGKAAGVDGLPLEFW---KLDSLSTVLLHFCNATLNGERPDEWGLSCIVPVPKKG-DLTKVDNYRGISLTQVAAKLYNRLILNRIRPEIDQKLRFNQNGFRPSRSTSSQVL-ALRRLXXXXXXXXXXAVLTFIGFKEAFDSINRESMFKILLAYGIPDKHVNAIQIMYTNNRANVMTSEGETEFFDVVTGVLQGDPLAPYLFIVVLDYALRTAITSEDGV 1178
T E+ + + K+ G DG EF+ K + + +L F + G P+ + + I+ +PK G D TK +N+R ISL + AK+ N+++ NRI+ I + + +Q GF P + ++ + + V+ I ++AFD I + M K L GI ++ I+ +Y AN++ + + E F + TG QG PL+P LF +VL+ R AI E +
Sbjct: 454 TGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLAR-AIRQEKEI 685
The following BLAST results are available for this feature:
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