TCONS_00039146-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00039146-protein
Unique NameTCONS_00039146-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00039146-protein ID=TCONS_00039146-protein|Name=TCONS_00039146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MKNGKAAGVDGLPLEFWKLDSLSTVLLHFCNATLNGERPDEWGLSCIVPV
PKKGDLTKVDNYRGISLTQVAAKLYNRLILNRIRPEIDQKLRFNQNGFRP
SRSTSSQVLALRRLVEEVNNHNVEAVLTFIGFKEAFDSINRESMFKILLA
YGIPDKHVNAIQIMYTNNRANVMTSEGETEFFDVVTGVLQGDPLAPYLFI
VVLDYALRTAITSEDGVTIEKRRSRRHHTEKLADLDFADDISYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023575XLOC_023575Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00039146TCONS_00039146Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 50..240
e-value: 2.0E-29
score: 102.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 31..244
score: 10.7
NoneNo IPR availableGENE3D3.30.70.270coord: 79..243
e-value: 3.6E-12
score: 45.8
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 47..241
e-value: 2.42414E-39
score: 136.267
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..211

Blast
[Close]
BLAST of TCONS_00039146-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.585e-22
Identity = 67/218 (30.73%), Postives = 112/218 (51.38%), Query Frame = 0 
Query:    5 KAAGVDGLPLEFW---KLDSLSTVLLHFCNATLNGERPDEWGLSCIVPVPKKG-DLTKVDNYRGISLTQVAAKLYNRLILNRIRPEIDQKLRFNQNGFRPSRSTSSQVLALRRLVEEVNN-HNVEAVLTFIGFKEAFDSINRESMFKILLAYGIPDKHVNAIQIMYTNNRANVMTSEGETEFFDVVTGVLQGDPLAPYLFIVVLDYALRTAITSEDGV 217
            K+ G DG   EF+   K + +  +L  F +    G  P+ +  + I+ +PK G D TK +N+R ISL  + AK+ N+++ NRI+  I + +  +Q GF P       +     +++ +N   +   V+  I  ++AFD I +  M K L   GI   ++  I+ +Y    AN++ +  + E F + TG  QG PL+P LF +VL+   R AI  E  +
Sbjct:  469 KSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLAR-AIRQEKEI 685
The following BLAST results are available for this feature:
BLAST of TCONS_00039146-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF27.585e-2230.73LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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