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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039145 ID=TCONS_00039145|Name=TCONS_00039145|organism=Clytia hemisphaerica|type=transcript|length=1001bp
TGGCTCTCAGTCAACAACAAAAGTTGAATTTCAGcaaaaagaaGATCGAG
AAGAAAGCGAATCATTTGACCCAACGAAGCTACGCGACCCCGAAAACGTT
TTTAAGTCGCAGCCACGGAcgaataaaaatgaagaagtcgTGAAAGAACT
GTCCACCACGTATACATATATGAAAGGAAAATGTGGGCATTCTTTTGCGA
GCTTCCTAAAACCACGGATCTTTCATTTCACCAAAGCTTTCACACCTTTA
TTTGCTTGGTTCCTTCCGATACTAGCTTCAATCCTCCAGTTCTGTTTGAA
TGAGAGAAAGGAGGACGAAGTCGTGGTATTATGCGAAGATATCTGTCAAG
TACAAATGGTTCAGTATGCCCTGGAAAGGATACACAAGCATCCAATTGCA
TACGCACCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAAATGAa
ggaaaaattcgtcaaaaatttgGACGAAATGGAGACAGTTCTGATATCCG
ATTATCGGTCTGTTCGTGGATTGGAAATGGCTCATACAATCATCTTTGTG
GATCCAGAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAATCACACG
AACCATAACAAATCTTGATGTCATTTCAACGAAACCTTTTCCACAAAATC
CTTCCACGAGTATCgagagagctttccaaaaatatgtcGACGGGACTTTA
GTAGTCAAGACACACGTTGAATCAAGCAAAGACGCTGAAGATCTTTTGAA
AATACAATTCCATTACAACGAAAAGGACggctcaaaacaaacaaaaattg
tCTCACAGAAATTGACCGATTTCAGGTTCGACGTTTCAAAATCTCTAGAT
GAAATCAACAAATATGAAGAGCTATGGCAAAACTATTTCAGGATGGCAAT
GACTCTTTCAAGTCCCATTTCACCTTTAGGAACCAACAAATGGGATGGCA
AAACCATGGAAAGTGTGACCTTGAATGATGGAACCACGCTCAGTTTTACT
G Run BLAST on NCBI transcript from alignment at sc0002023:19883..25219+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039145 ID=TCONS_00039145|Name=TCONS_00039145|organism=Clytia hemisphaerica|type=transcript|length=5337bp|location=Sequence derived from alignment at sc0002023:19883..25219+ (Clytia hemisphaerica)
TGGCTCTCAGTCAACAACAAAAGTTGAATTTCAGGTTAATGAGGTAATTT
TGTTAATGGGTGTACTGTTTATAATTAGCTTACCATTCAAATTGAATAAT
GAAGCTATTTTCTCTTTGTCAGAACCGATCATCTTTTTAGATATTCTTTC
TACagattttttgttaattctgtTTTTCCAGACTATAACTGgttaacttt
ttgtgttgggtATTACaacttatttttgaaattccgtTCAAATGATCTGA
TTCGGATGTAATTTTAACTTGTGAAATAAACGTGCTCTCCTTGGCAACAT
ACCCCCCTCTTACAGACCTGCTAGCAGGATCTTTCAGGCAGTTGGGGTTT
AAATAAAGGACCAGAATTCAATTGGGAAGATTGATATATCCCATGCTTTC
GAGCAAGAAAACTCAATATGGatagaaaaaatagcacaatatattttaga
gtataattttccattggggactatgttttcatcaattttttttcaatatg
aaGGGGTACTTGGTCTGTCAGAAGTGACTAATTGTCTTTGATTTCAATGC
CTTGAAGAGGCTAGTTCTGAAACTCCTGGTTGGGAAATTAaaagccactt
attttccattCAGAACACATGCCCGtgtgttttcaaaacaaaatttaaaa
gtgcacggcaaacttaaggcttcactttttcttgcttaaaaaaggTAGAA
GATTCTTCTCTAGCACCTTCGTACGATGGCTCAGAAGGCTCAAAACACGC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAC
CGAGTTGTAACAAATGAGTTGATGTTAATAGCGAAAGCATTTGTGGTTTG
ACGAGTTGCAAATCTGGTTTGTGATTTATATATAACAACATTTTTTTGAC
GCGTTAATCGGTCACTTTTTTGCTTCCCCGATTTAAGCCCAACAATACCC
CGATTTTTGCCACTGGGGGAAAACTTTTCCGACCAACACTTAACTCGgaa
attttgattcattttgcctaactcgacattcattttaaatacccaaaaaa
aattcattgcgCGGGCCGCTCACTTGGGAATTTCCCACCGTGACAAGAAG
TCAGAATTGCGGAGTGTCACTGGGCAAAAGGaacgacgggtatgtgcggg
tactaagggtaccttttccaatatgtttaaaatgcactgtaagggtcgga
aaaactagagatgcactgtaagggtagaaatttcagaaaagtcttgaaaa
atcgagatattttgaccaaacaTGCTATAATTTGACCATtatttgcacga
aagggatcgaaaatttgggggaaaatgcactcttagggtatgattttcac
tgattttaaataccgtcagtccgcaaacccagtgccccccggGCTTGAGC
CTTTTGGGCCattgaccctagacagttctagttcacaaattttataagaa
ctagaaGAAGGTCGTTAGGGATCATCGTACCTTCGGGGCTTCAACCTGAG
TTCCACCACTTTACCGACTacagaagaaaaacaagcagtgattttttaaa
ttcttttttatttagtttttggacctaccccggttgggtggaggtcctat
aaagtAACCTGTgcctgttcgtccgttcgttaccaacttttctcaggatt
gaatcataggaatcttttgatttttggtacaaaggtgcaaaatagtggtg
gccaaaatgtgacagagcccgattttcgaaaaaagatatttttgggccaa
aaaacgggatttttttgcatgaaagtagataGAAGAtcgctcaagcagat
ttttgcaaaaaaaatttggttggctcaaaaaacgcatctttatctataag
aatcactatttataagcatagaacaatgttcttagccaaattattatttt
tattattactttttctaaagaaaatgtcacggtagagcgcgatggtttga
gttttctggaaacctgtgcatttttctgatagtggattgtttttataaag
aaaagcgtttaatagcttttttatttatttttcaaaagtctttttcaata
gtgctgatagtttctcccaatagatatgctttcattgttctttatttttc
tgtATTTTAACCAGTTATGTCtgatgtgtttcattgtttaaatgttcatt
gattagttggataaccaggtaggtccataaaagtatcacttgtttttttt
cCGATTAAACCTTACCTTTATGTTTTaacgagaaatttcaaattacttcc
cattttttagcaaaaagaaGATCGAGAAGAAAGCGAATCATTTGACCCAA
CGAAGCTACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCACGGAcgaat
aaaaatgaagaagtcgTGAAAGAACTGTCCACCACGTATACATATATGAA
AGGAAAATGTGGGCATTCTTTTGCGAGCTTCCTAAAACCACGGATCTTTC
ATTTCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATACTA
GCTTCAATCCTCCAGTTCTGTTTGAATGAGAGAAAGGAGGACGAAGTCGT
GGTATTATGCGAAGATATCTGTCAAGTACAAATGGTTCAGTATGCCCTGG
AAAGGATACACAAGCATCCAATTGCATACGCACCTTACCTTACCGGAGAA
TATCCTCAAGACATCCACAAAATGAaggaaaaattcgtcaaaaatttgGA
CGAAATGGAGACAGTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGG
AAATGGCTCATACAATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCA
CATTTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGATGTCAT
TTCAACGAAACCTTTTCCACAAAATCCTTCCACGAGTATCgagagagctt
tccaaaaatatgtcGACGGGACTTTAGTAGTCAAGACACACGTTGAATCA
AGCAAAGACGCTGAAGATCTTTTGAAAATACAATTCCATTACAACGAAAA
GGACggctcaaaacaaacaaaaattgtCTCACAGAAATTGACCGATTTCA
GGTTCGACGTTTCAAAATCTCTAGATGAAATCAACAAATATGAAGAGCTA
TGGCAAAACTATTTCAGGTATTGAGCtttaccatttttttttaatcttac
gtcagagaattttttgattttatctgGTTTACCTCAAGAAATCGTCAGTG
GAGAAAACCCTGAACATTAGTACCGTTCAAGGGACAACCGAACCTTATTG
TCTGCACATACTAGAATATGCATTCATTTCTGTATCTACCCTACCTACCC
GGCAGTTATAAGGATTACCATACCggtatattttcgaaaatttggtcttt
tcgaaaatttcgcctttaacgaaaaatttattttttctctgaaaatcaGA
CTGCAAAcaaatacttttattttttgtcCAGGATGGCAATGACTCTTTCA
AGTCCCATTTCACCTTTAGGAACGTAAGTCAATGCCGTTgaaactctcta
attcgacattctataATTCGGTGATAGTGTCTCCGTTGAAAGTAATATCC
TTTGGAGATTTTTGCTTTCCTATTTGATTTCCGTGtgtaaaaggattttt
tttttgcaaatgtcTCTCTTAATCGAACTTCTAAAGCTTTCTTTAATTCC
AACTAAAACATTCGTCCGCGCAGCTGGAAAATGAAGTAAGATACTTTCTA
TAACCCGAATTCTCTTTATAGTTCTCCGTCCCTTGAAGATTGAATTagag
catgaacatataaacgactggacgtctatcttttattgtttcTTTGAAGC
GAGTTTCGTTGCCACCTgtatttcaacatttaacagCGCTGAAATGAAGA
Atctcaactgcgtgtatacttttgaatcacttttgtcacttcaaaaatcg
aaaaaaatagtATACCCAAGTATAAAAATTGTACAAGAGGAGTATCATAA
TTCGACCCtcatactctctaaaattattctaTACTTTtcagtcgaaattt
caaaatattagccGGAGCTACAACAAGTTAACAAAGTTAACAAAGTATTT
TTCCTCATAATGTAAATTAAAGAGTCAAAAAGAGTTTAACCATCTTCTAa
aaagcggggggggggggggggaacttgattttcgatattttagtGCGTAC
GCACTATTTGTACGGCCCCTTTATGtctttaacgaggcggcaatgAAACC
AGCCAGTGGTTTAAATATTTATATGTTTATATTTTCTTGATTAGAGAAGG
TCAACTGTATCATTCGATACCCTCTCGtcttcgatgaaaatccaattacA
TTTAGATGTTGAATTATAGAGTCTCAACTGTAATTACAATTTTGAGTTTT
CCAAATTTACAATTCTTTTTTAGAAGAACTGAATAGTATAGCTTCTTTTA
AAAGGCAGATAcattaccgtgaaaagcacaggtcgaaatcatatatgaAT
GAATgcgaaaaaaatattcaaaaaataattttttcacatattaaaaaata
cagtttaaaactttttcctggttgttttttgatgatttttgaagtcaTTC
AATCATCATTGATGAACTTTGGactatatcttttgattgaataatttgat
ttttttattgattgatgTTCTAAGATCGAAGAATCACTCgtgtaaaaatg
ataattatagcacaattatacaccttttcgaccgtagccgccaattgccg
cgctggcattttttaccaccctaaactcgacccaatcctttttttacact
tttttctattgtcttcaagcgggaaaaaagactgggacggttttagggtg
gtaaaaaatgcccgcgcggcaataaTTAGCggttacggtcgaaaaggtgt
attgaagaagtttatttttttcttcttcaattttaatcttcattttcaga
tttttttgaattttttctttttgataatattccattcttgtttatctttt
caacaagcagtAAACTGCTATcttattcgaatttcgaattctatcaaaac
ttACAGCGTTCTTTGGctccgctgcagattatattaaGACAGACTTCTAA
TAGTATCTTCTGCAAATAGCAACAAATGGGATGGCAAAACCATGGAAAGT
GTGACCTTGAATGATGGAACCACGCTCAGTTTTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039145-exon-sc0002023-1491911889:19883..19916 | TCONS_00039145-exon-sc0002023-1491911889:19883..19916 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1510915933:19883..19916 | TCONS_00039145-exon-sc0002023-1510915933:19883..19916 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1575043694:19883..19916 | TCONS_00039145-exon-sc0002023-1575043694:19883..19916 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1491911889:22343..23199 | TCONS_00039145-exon-sc0002023-1491911889:22343..23199 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1510915933:22343..23199 | TCONS_00039145-exon-sc0002023-1510915933:22343..23199 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1575043694:22343..23199 | TCONS_00039145-exon-sc0002023-1575043694:22343..23199 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1491911889:23514..23555 | TCONS_00039145-exon-sc0002023-1491911889:23514..23555 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1510915933:23514..23555 | TCONS_00039145-exon-sc0002023-1510915933:23514..23555 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1575043694:23514..23555 | TCONS_00039145-exon-sc0002023-1575043694:23514..23555 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1491911889:25152..25219 | TCONS_00039145-exon-sc0002023-1491911889:25152..25219 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1510915933:25152..25219 | TCONS_00039145-exon-sc0002023-1510915933:25152..25219 | Clytia hemisphaerica | exon |
| TCONS_00039145-exon-sc0002023-1575043694:25152..25219 | TCONS_00039145-exon-sc0002023-1575043694:25152..25219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002023 | supercontig | sc0002023:19883..25219 + |
Blast
The following BLAST results are available for this feature:
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