TCONS_00039127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039127
Unique NameTCONS_00039127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039127 ID=TCONS_00039127|Name=TCONS_00039127|organism=Clytia hemisphaerica|type=transcript|length=1434bp
ATGGGCAAGATCGAGCCGCTTTGTCTTTGTTTAGTGAAAACATACAGGCC
AAAATACAGTGTtgtaaacaatttttgaaggttTGGTATTATGCTTAGCA
TATACTTTAATATTTTCCCTGAGCCAAAACATTTACTACCTCTTTTAGCA
CTCTTAGTTAAAATTTGGAACTGAAAAAACTCCATCCTGATAATCTCCTG
CTGATAAaactatgaaatgaaattatgaTCGCTGGATAGAATGAGCATTT
CGGAAAATGTTTACACTGAATAtgaattagattttttaaaccGCTGCATT
ATATCTTTTTCCTTATTCAGAAATAGTTTGCTGCacaaaattttgcttga
aaccTAAATCTTCTAGCGAGGTATACATTTGCAGCAAATGTAAATCTCCC
TATCATCGCAGGTGTGTGGAACCGATACCAGAAGTCCCTTATTCTTGTGG
ATGTCACCGTATTGCTGCTTTAAATATAGAATTCGAAAGGCTGCTGTCAT
GGACGGAGAATCcaaatgaatttaaaagaaagtttatgAGATATTGgaat
aaaagttttcaaaatgtagtTTTACAACTGAACGAAGGATGCTGCAAGAA
ATCTACATCGTCTATATCTCACCTTTTCAGACCAGACATTattgCTATTT
TGGAAAACCTGATCAAAGAAATGCTACCAATGGCTGAACCTGAATTGATA
CGTAGCTTTATCCTACCCGAGATGATTGTTCGAACGATTTCACAGGAATG
TAAATGTGCTGTTTTGTCTGTACGGAAAGTTTTACTGGAGAGAGTTCTAA
TAATTACAATGCTTCTATATAATACTTATATTATTTCATAGGTTGCTTAA
CTCTTATTCGATATTGTAAGCAAGTATAATATTATAAAATATTGTTATAA
ATAATGAATTTCTTATATTCTTGTTATAAGTAAAGAAATGGATTTTACGA
ATTATGATAAAGTCTTTGTTTTAGTACCTAGAGGTTACACTTGGGTCCAT
CTGTTACTCGTTTTAATCCAGGGGATAAGAATTTGAAGACCAAGTATATC
CAGGGGGTTGGTGTTAAGAAAAACTCAAGTGCCAAAATAAACGCGGAATG
GGATGGGAAATTTCCAAAGGAGTAAATAGAAACTCAGCTGTTAAAAATAG
TAATGATTAGGAAATGATATAAAAACAAGCTGTACGGAGCAAAAGAATAG
CGGCTTTGCTTGGTATACTACAGAAATTatttagtcaaaaaaaaatgaat
aaggGGAGGTGGAGTCTTAAGAAAGTCGAGGGGGTTGCAACCCCTCCTCT
CACCAACACCGGGTATACCGGGTTTGTATATTGGCCCTATATATGGGTTC
ATTCTTTACTATAGGGGATAAATTTGCCTCGAAATGTTCAATCTCGGAAA
GGAGTCGAAATACCACACCTTATCCGTCTAAAAT
Run BLAST on NCBI

transcript from alignment at sc0002020:16498..20491-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039127 ID=TCONS_00039127|Name=TCONS_00039127|organism=Clytia hemisphaerica|type=transcript|length=3994bp|location=Sequence derived from alignment at sc0002020:16498..20491- (Clytia hemisphaerica)
ATGGGCAAGATCGAGCCGCTTTGTCTTTGTTTAGTGAAAACATACAGGCC
AAAATACAGTGTTGTAAACAATTTTTGAAGGTTTGGTATTATGCTTAGCA
TATACTTTAATATTTTCCCTGAGCCAAAACATTTACTACCTCTTTTAGCA
CTCTTAGTTAAAATTTGGAACTGAAAAAACTCCATCCTGATAATCTCCTG
CTGATAAAACTATGAAATGAAATTATGATCGCTGGATAGAATGAGCATTT
CGGAAAATGTTTACACTGAATATGAATTAGATTTTTTAAACCGCTGCATT
ATATCTTTTTCCTTATTCAGAAATAGTTTGCTGCACAAAATTTTGCTTGA
AACCTAAATCTTCTAGCGAGGTATACATTTGCAGCAAATGTAAATCTCCC
TATCATCGCAGGTGTGTGGAACCGATACCAGAAGTCCCTTATTCTTGTGG
ATGTCACCGTATTGCTGCTTTAAATATAGAATTCGAAAGGTGATTCTTTT
GTTGGGAAATCTTTAATCTGTAAATTGTGAAAACTACTTGCAACACAAAC
TCTTACAACCCCATCCTGATAATCTCCTGCTTATAAAACTGTAATTAAAA
ATATGATTGCTGGCTGGATGAAATGAACTTTTCGGAGAATTTTTAATCTT
TTAATTGAATTTTCAGGCTGCTGTCATGGACGGAGAATCCAAATGAATTT
AAAAGAAAGTTTATGAGATATTGGAATAAAAGTTTTCAAAATGTAGTAAG
TTACTGATTTCTATTTTGTTAGTGAGCTTACCAGAGAAAAATTGAGTACC
AGCTATTTTTATTCCTCGTGTAACAATGAAATAAGTTTGTATTTGAACCA
TTAAGTGAAGGAGATTTAAGTTTTGTACATGTCAAACTTGTGCCGTTTCA
CTTACATTCTGATTCTCCATTATTTCCATGGTTATACTTTTTTCTCATTT
TCAGGTTTTACAACTGAACGAAGGATGCTGCAAGAAATCTACATCGTCTA
TATCTCACCTTTTCAGACCAGACATTGTAAGTATAACCTATCCTATACTC
ATAGCTGGCACCCACTCCCCAACTTAAATTGGTTGAGGTAAATCTCAAAT
TTGCCAAAAAAGTGGGTGGGGGCTGTTTCACTTTTAAGTTCAGTGGGGCC
TAAAAGAGTGGGTTTAGTAAAGATAGTATTTATTTCATTATGATCAGGAT
TTTAGGCCGAAATTATTCACCTTCAAAGTTGTAACACGGCCCCTGAAAAA
TGTCGGAGGCACGACCTCTTATTTATTTCCCAAATATATTTCCTGGAAAA
TTTTACCCAAAATGCAATTTCTTTATCCATTGCCCAATTATGACGGACAA
CAACGTCTAATGATTTTAATATATATTACTTTGAATTCTGACCTAAAATC
ATTATTCTTAGTTTTTGGTGATTATTTTAAGCTGGAAAACAGTGCATGCT
TCAGCATTGAGGAAAACATCTCCTTTTTTCACTAAAAAATAATTTTGTGT
GCAAGGCAGCGTGTTTTCAAATAGCCTCTACGCAACAATGCAAAATAATA
GATAACCAACTTGCATTGATCCTCAAAACAAATTTTGAAGCAAGAGCCTT
CCGGAGGTAGTTAGTTATCTATTATTTCTACATCGTTTCTTTACGTGAAG
TGCAAATTCTTATTGTCACTTCACACGTGGAAAAGAAAGCAAGTCAATTC
TCTTAAGATATTTTTTTGATAAAGTTTAATTATTTTTAGATTTTTAATGA
CACATGTGTGAATGTTGAAATGTATGTGATTAACCTTTAACCTTTAGACC
TTGTTTCCAGTCGTTCTTTTTAGATTGCTATTTTGGAAAACCTGATCAAA
GAAATGCTACCAATGGCTGAACCTGAATTGATACGTAGCTTTATCCTACC
CGAGGTAAAAAATTGTACACCTAAAACAACTTTGTATATCCAGTTTAATA
AATTTGAAGGAAGCAGAATGCTGGGTAGCTAAATCACCCATATTCCCAAG
CAATAAATGCATATCATTAAGCTAGGAAAATAGCCTGTTTTTAACCCAAT
AGGTCGAACTTTTTACACATTAGTGGATAACAAGCAGATATTCGATATGT
CAAAGTTGGTTAATAAATCCAATAACCAACAAACATAAAACCTTTTGAAT
ATGTTTTATTCTATGCAAGGAAAAAACAAAAGAAAAAATCGAAACATTTA
CAGAATAAAAAGTGCTCACAAAATCGAACGTTCGAAAAATCTTTCTCTTT
ATCAACTTTGTAATTACTTTAAATCATGCAAATGTAAAGTAATATAACAA
TATATCTAATTTCTTTTCCAGCAAGAGTAAAAAACCATGAAATTTCGAAA
ATTTGGAGTAAAAGAATTTGCCGTTGAATAATAGCCATGAAATATCGGTA
ATTATTCAACGGCTGTAATAATACAATTTAAAACAATATTATAATATAAT
CTGATTGCTTACGGAAGCCCTGAGCGGCCACAACGACACCAATATTCCAA
ACTCTCACAACAATACTTAAAACGTTTACAATAACATCCAAATTCTCATA
ACAATATCAAAATTTTGACAACAATATGAAAACTCAGAAAGAATCTAAAG
CACTTTCTCTCGCAGTGATGTTTTTACGTCTTGTTGACGATGAAAAATCT
TCCATTAGGACAGTGCCTTAAGTTTCTAAACACTAGTCTAAATGTAGCTA
AATATTTCACGTGGTGAGAGATTTGTTACATTAAAATTACAAGAGAGTCT
GATAGTTGTCCCTTTCANAGAAAGATAGACTTAAATTTTGATGGGTCATT
TATTAAATTCAATACTCTAGTCTAAATGTAGCTAAATATTTCACGTGGTG
AGAGATTTGTTACATTAAAATTACAAGAGAGTCTGATAGTTGTCCCTTTA
TAATTGATAGGAAAAAAGTTATCCATTAAGTATAGAGTTGGTAAGCATCT
GGTGTACAAAAGGCTTCAATTTCTGGTGTACAAAAGGTTCCGATTTCCAG
AAAAACCATAAGTACCATAAGCTTTATGGACGGTATGGACCAGCTTCTAA
GATCGTATAGAAAATACTTGCAAATAAGGTGACTGTGGTGCAGTCTCTTC
CCCACATTCTATGCAGTACTTTTCATCGTGGATTTCTCCACGGCACTCCA
TGACGACTATTACCAGACTATCTGTAATTTTATTTTAACACAAGGTAGCA
TGTGTGTAAATTGTTATCGTTGTGCTCACTCTTCTGTAATTGCTAGATTG
CTCTAATTATCAATCGCTTTTGTTCTTTTAGATGATTGTTCGAACGATTT
CACAGGAATGTAAATGTGCTGTTTTGTCTGTACGGAAAGTTTTACTGGAG
AGAGTTCTAATAATTACAATGCTTCTATATAATACTTATATTATTTCATA
GGTTGCTTAACTCTTATTCGATATTGTAAGCAAGTATAATATTATAAAAT
ATTGTTATAAATAATGAATTTCTTATATTCTTGTTATAAGTAAAGAAATG
GATTTTACGAATTATGATAAAGTCTTTGTTTTAGTACCTAGAGGTTACAC
TTGGGTCCATCTGTTACTCGTTTTAATCCAGGGGATAAGAATTTGAAGAC
CAAGTATATCCAGGGGGTTGGTGTTAAGAAAAACTCAAGTGCCAAAATAA
ACGCGGAATGGGATGGGAAATTTCCAAAGGAGTAAATAGAAACTCAGCTG
TTAAAAATAGTAATGATTAGGAAATGATATAAAAACAAGCTGTACGGAGC
AAAAGAATAGCGGCTTTGCTTGGTATACTACAGAAATTATTTAGTCAAAA
AAAAATGAATAAGGGGAGGTGGAGTCTTAAGAAAGTCGAGGGGGTTGCAA
CCCCTCCTCTCACCAACACCGGGTATACCGGGTTTGTATATTGGCCCTAT
ATATGGGTTCATTCTTTACTATAGGGGATAAATTTGCCTCGAAATGTTCA
ATCTCGGAAAGGAGTCGAAATACCACACCTTATCCGTCTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023566XLOC_023566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039127-exon-sc0002020-1575043694:20003..20491TCONS_00039127-exon-sc0002020-1575043694:20003..20491Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1575043694:19747..19825TCONS_00039127-exon-sc0002020-1575043694:19747..19825Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1575043694:19466..19537TCONS_00039127-exon-sc0002020-1575043694:19466..19537Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1575043694:18588..18668TCONS_00039127-exon-sc0002020-1575043694:18588..18668Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1575043694:16498..17210TCONS_00039127-exon-sc0002020-1575043694:16498..17210Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1510915933:20003..20491TCONS_00039127-exon-sc0002020-1510915933:20003..20491Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1510915933:19747..19825TCONS_00039127-exon-sc0002020-1510915933:19747..19825Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1510915933:19466..19537TCONS_00039127-exon-sc0002020-1510915933:19466..19537Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1510915933:18588..18668TCONS_00039127-exon-sc0002020-1510915933:18588..18668Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1510915933:16498..17210TCONS_00039127-exon-sc0002020-1510915933:16498..17210Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1491911889:20003..20491TCONS_00039127-exon-sc0002020-1491911889:20003..20491Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1491911889:19747..19825TCONS_00039127-exon-sc0002020-1491911889:19747..19825Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1491911889:19466..19537TCONS_00039127-exon-sc0002020-1491911889:19466..19537Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1491911889:18588..18668TCONS_00039127-exon-sc0002020-1491911889:18588..18668Clytia hemisphaericaexon
TCONS_00039127-exon-sc0002020-1491911889:16498..17210TCONS_00039127-exon-sc0002020-1491911889:16498..17210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002020supercontigsc0002020:16498..20491 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.526097	0.544666	0.347475	0.280952	1.02066	0.431154	1.34186	0.923289	1.81425	0.466675	1.57532	1.0795	0.938989	0.630206	0.861686	0.766411	1.19729	1.11482	0.908052	0.721973	1.46403	1.64109	1.11409	1.07187	0.564438	0.595822	3.5692	4.22347	0.429992	0.102508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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