TCONS_00039111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039111
Unique NameTCONS_00039111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039111 ID=TCONS_00039111|Name=TCONS_00039111|organism=Clytia hemisphaerica|type=transcript|length=746bp
CCGCCATCAAATTGTTTACGGACATTAAAAAAGCAACAAATAATGTATAT
TCCCAAACAACAGGAAGCTTAGTTTGGACTCAAAGGCTTCTAGatcatgt
taaaaaaaaattaaaaagtttggtTTGTTAAAGGTTTCCACGTAGAAACG
TGATTGAAATACGAGCCGTTACAAATAAACTTGTGGACCCATGCTAATAT
AATGTTAGATAGGATATACGCGAAACTTTGAAACATTTGGGGCGATTGTA
ATAGCTCTTAATcgcaaaagaaaaaagtgattttctaaaaacatGTGACT
AACTAAAAAACAGCACAATTTGTACTACGGCACTATTGaagtgcttataa
gaaaaatgataatgctcgtcatcccttgtttactttataaaagCCAATAT
CCGAAAGGTATATCGCCTTCAATTAGAAGTTATTAATTAGATTCCTATAA
ACTaagtgcttataagaaaaataataatgcTGATCATGTCGgacatcctt
tgtttactttataaaaaccaataaccgaaagGTATAAGTGCTTATAACAA
AATATGTGCTCGTATTGCGCACAATGCCTTGTTTATTATAGAACAGCTAA
TTACAGGAACATATAGCAGTtttgttaaaaactttttatttgattattat
aaAGTAACAGTAACATCCTTTATACTTTTCAAATTACAACTcttgaaatc
caatggactccatttgtggaattccaccaaatccaatTAATTGAAT
Run BLAST on NCBI

transcript from alignment at sc0002018:29941..31142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039111 ID=TCONS_00039111|Name=TCONS_00039111|organism=Clytia hemisphaerica|type=transcript|length=1202bp|location=Sequence derived from alignment at sc0002018:29941..31142+ (Clytia hemisphaerica)
CCGCCATCAAATTGTTTACGGACATTAAAAAAGCAACAAATAATGTATAT
TCCCAAACAACAGGAAGCTTAGTTTGGACTCAAAGGCTTCTAGatcatgt
taaaaaaaaattaaaaagtttggtTTGTTAAAGGTTTCCACGTAGAAACG
TGATTGAAATACGAGCCGTTACAAATAAACTTGTGGACCCATGCTAATAT
AATGTTAGATAGGATATACGCGAAACTTTGAAACATTTGGGGCGATTGTA
ANTTTGTTAAAGGTTTCCACGTAGAAACGTGATTGAAATACGAGCCGTTA
CAAATAAACTTGTGGACCCATGCTAATATAATGATAGATAGGATATGCGC
GAAACTTTGAAACATTTGGGGCGATTGTAATAGCTCTTAATcgcaaaaga
aaaaagtgattttctaaaaacatGTGACTAACTAAAAAACAGCACAATTT
GTACTACGGCACTATTGaagtgcttataagaaaaatgataatgctcgtca
tcccttgtttactttataaaagCCAATATCCGAAAGGTATATCGCCTTCA
ATTAGAAGTTATTAATTAGATTCCTATAAACTaagtgcttataagaaaaa
taataatgcTGATCATGTCGgacatcctttgtttactttataaaaaccaa
taaccgaaaggtatatggcctTCAATTAGAAGTtattaattaaattttta
taaactaagttcttataacaaaaataataatgCTGATCATGTTGgacatc
ctttgtttactttataaaaaccaataaccgaaaggtatatggcctTCAAT
TAGAAGTTATTAATTAAATTCTTATAAACtaagttcttataagaaaaata
ataatgcTGATCATGTTGgacatcctttgtttactttataaaaaccaaaa
aCCGAAAGGTATAAGTGCTTATAACAAAATATGTGCTCGTATTGCGCACA
ATgccttgtttactttataaaaaccaaaaaCCGAAAGGTATAAGTGCTTA
TAACAAAATATGTGCTCGTATTGCGCACAATGCCTTGTTTATTATAGAAC
AGCTAATTACAGGAACATATAGCAGTtttgttaaaaactttttatttgat
tattataaAGTAACAGTAACATCCTTTATACTTTTCAAATTACAACTctt
gaaatccaatggactccatttgtggaattccaccaaatccaatTAATTGA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023559XLOC_023559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039111-exon-sc0002018-1491911889:29941..30174TCONS_00039111-exon-sc0002018-1491911889:29941..30174Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1510915933:29941..30174TCONS_00039111-exon-sc0002018-1510915933:29941..30174Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1575043694:29941..30174TCONS_00039111-exon-sc0002018-1575043694:29941..30174Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1491911889:30304..30600TCONS_00039111-exon-sc0002018-1491911889:30304..30600Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1510915933:30304..30600TCONS_00039111-exon-sc0002018-1510915933:30304..30600Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1575043694:30304..30600TCONS_00039111-exon-sc0002018-1575043694:30304..30600Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1491911889:30928..31142TCONS_00039111-exon-sc0002018-1491911889:30928..31142Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1510915933:30928..31142TCONS_00039111-exon-sc0002018-1510915933:30928..31142Clytia hemisphaericaexon
TCONS_00039111-exon-sc0002018-1575043694:30928..31142TCONS_00039111-exon-sc0002018-1575043694:30928..31142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002018supercontigsc0002018:29941..31142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.330333	0.128851	0.299216	0.219552	0.178189	0	0.084939	0	0.055673	0	0.200803	0.176	0.263633	0.228154	0.112544	0.161036	0.148788	0.0508342	0.210691	0.220473	0.255508	0.373883	0	0.137737	0.283731	0.44314	0.452952	0.290041	0.0733287	0.224131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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