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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039097 ID=TCONS_00039097|Name=TCONS_00039097|organism=Clytia hemisphaerica|type=transcript|length=2752bp
AAattttgattccatcattggcGAAGCAAACCTCTTTAATGGTGGGCCAG
GATTTGATTGGAACGCTTATGCCAAAGACTGTTTTGGATCTGATGAATGG
CCTGAAAACACCAAAACTTGGTTAAAAGACAAGGATAAGGAAGCAGAAGA
GAGTATCAACACTCACCTTAACAACCTCAATCTCCCAGACGTCAATCTCT
TATGGGCCAATCCGAAACAAAGACTCGTCATAGCAATCAACTTGGAGAAG
CTTTTAGATGTCGCCTCCGGTGAAAACAGCTCAGAGCCCTTACGCCTCCT
TGTACAGGGCTATGGCGGAACTGGGAAGACCTTCACAATAAATGCCATTA
CATACATTACCAGGCGTTTATTCAGACGAAACGGATCAACACTCAATATT
GCTCCAACTGGTGCAGCATCTACTTTGATTCCAGATGGAAGAACTCTCCA
CAGTACCACTCCTATCCCCTTCGTCTCTCGTAAAGAAAGAAGTACCCTCA
ACATGACAGATCGGCCAATGAACAGTAAGAAGTTGGATAAGCTACACAAA
GTGATCGGTTTTAACAAAGAAACTCAGAGTCATGGCTTGCACACATTGAA
TATGGATGAACGATCCATGTATTCTCCAAggttgctggcgtggtgtaacc
AGAGAATGATGGAAGCCACCGGGGATTTCGATCACGATTTTGGGAATATT
CCAGTCGTTAACTTCTTTGGCGATCTTGGGCAACTTGGTCCAATAGAAGG
TAAAGATTTACATATCCATCCATCAAAGAACGCAACACCAGAAAATTTAA
AGGGCCATGGCATATATCGTAATTTCACCCAATGCATTCTTTTGGATCAA
ACAATGCGTCAAAAACCCGATCAAAAATCTCTACTCGAAAGATTGTTACG
AATTCGATCCGGTAATATAACTCAACAAGATTGGCTGGATATCAACGCAA
AGCACGAGAAGAATATGTCACAAGAAGAAAAGGATGAATTCAATAATGGA
CGTGTTATAACCCTTAATGAAACATGGCAAGAAGTATTTGATGAAAACCG
AGAAAAACTTGCCGGTTTGGGTGTTCCAGTTGCCACGATTCCTTGTACAG
AAGGAAGAGGTAGATGTCATAAAACTACTGGTGAAAAACAAATGGGTCAG
ATACCAGGCATTTCTTTTATTGCTGTGGGTTGCCCTGTCATGCTCACCAA
GAACCAAGGGCCCTTAACCACTTTTGGTCTAAATAATGGAGCCATTGGTA
CGGTTATTGCAATCCTTTATCCGGATGGAATCCAGCCACCTTCCATGCCA
GATGCTGTTATTGTTAACTTCGAAAGTTACAGAGGACCTGTTTGGTTAGA
AGGTCACCCCAAATGGGTTCCAGTCGTTCCAATGAAAACAATCTGCGATG
TCCACGACTCTTGCACTCGTACTTGTCTGCCGTTAATTGCCGCTTATAGC
ATTCCTATAGCAAAAAGTCAGGGAATGACTGTCGGTGAAGGTAAAGCAGC
AACTCATATGAGAGTAAAACTCCAAGAAAAGATTTTCATGGAAGCCCTCT
CACTCGGAACGACTTACACAGCTCTCAGTAGAGTAGAGTCTGATCGAAGA
TGGTGTTTGGTCGACCAACTACCGATGGAAAGAATTTTATACTTTAACAA
TCATCCAGATATGCCAGGAAGGAGACAAGAAGAAGAGAGATTGAATACAA
TGTCCGACGAAACCATCGCACAATATTCTCACTACATGGAAGACATCGAT
TCTTATCTAAACCTGCTGAATCGATTTGACTCTGtttgtaatgatggaat
catttCCACTGTTTGTAGAAGAAATGATGATAGTTGTCCATGTTTGCTTT
GCAAATCGACTCATCGCCAATAAGTTTTCCATCGGATGGGTAAGAATAGG
ACACAAAATCGAACCATTCGTGTCCCCATTCAAAATTTACATGACATGAA
TTTACAGCTCTTATTTGTTACTCCAGAATTGTCATCATCATATATAATAA
TGTCCTGAAGAACTTCTCTCCAGCATTTCATTTCCAACTTAAAAAAGCAA
GAGCGAGTTGGAATCACTTTCCAGCCATCATGACGAATAGGGACCTGGAG
ATAGCTCCTGGAGTCCCGGCGCCCATCCCATGACACACAGGCCATTACAT
TGTGTTGTTACCAAGACGAGCTTTGTGCCATAATAGTGGAATATTAGTAC
ACGGCGCCCAATTTTGACACAGTTCCTCAACTGTTGTCTGCACTACAAGC
TTATCTTATCGCTGGAATAAAGATTCCTCTTGCAGGACTGTAGATGGATC
TCTTAGTATTGTTGAAGTAAATCTTCGCAATCCATGTcttattgtaaatt
ttgaatGGTTGCATTACGAGTCATCGTACTAAGGTGTGGTTATGGGCTGA
CTATTAGGGGTGTAGGGAGGTCAGCCACGATGACTCGTGTTggtttcaaa
ctcattttaaataaaaaagattgacactgattcttttgatgtctttttaa
cttcttttttttttcgtccataGATTGGTGAATGCTTCTGGAGATCAACT
AATCACAAAAGTTTGAAATTCAACTTTATTATTTAGCTATATCGTTTTCG
AGTGCTTTAATCTACTAGCAAGTTGAGTATTTCTAATGACTATTATTGCT
TATGTGGGACTTTCCAAAACGTGATTTGTAAATGGTTAAAACCCAATGCT
ATCTACTTTATATCTTAATTTTACTTCTGCAGATCAATCTTGACGATGGA
TA Run BLAST on NCBI protein sequence of TCONS_00039097-protein >TCONS_00039097-protein ID=TCONS_00039097-protein|Name=TCONS_00039097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
NFDSIIGEANLFNGGPGFDWNAYAKDCFGSDEWPENTKTWLKDKDKEAEE
SINTHLNNLNLPDVNLLWANPKQRLVIAINLEKLLDVASGENSSEPLRLL
VQGYGGTGKTFTINAITYITRRLFRRNGSTLNIAPTGAASTLIPDGRTLH
STTPIPFVSRKERSTLNMTDRPMNSKKLDKLHKVIGFNKETQSHGLHTLN
MDERSMYSPRLLAWCNQRMMEATGDFDHDFGNIPVVNFFGDLGQLGPIEG
KDLHIHPSKNATPENLKGHGIYRNFTQCILLDQTMRQKPDQKSLLERLLR
IRSGNITQQDWLDINAKHEKNMSQEEKDEFNNGRVITLNETWQEVFDENR
EKLAGLGVPVATIPCTEGRGRCHKTTGEKQMGQIPGISFIAVGCPVMLTK
NQGPLTTFGLNNGAIGTVIAILYPDGIQPPSMPDAVIVNFESYRGPVWLE
GHPKWVPVVPMKTICDVHDSCTRTCLPLIAAYSIPIAKSQGMTVGEGKAA
THMRVKLQEKIFMEALSLGTTYTALSRVESDRRWCLVDQLPMERILYFNN
HPDMPGRRQEEERLNTMSDETIAQYSHYMEDIDSYLNLLNRFDSVCNDGI
ISTVCRRNDDSCPCLLCKSTHRQ Run BLAST on NCBI transcript from alignment at sc0002012:5639..8390 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039097 ID=TCONS_00039097|Name=TCONS_00039097|organism=Clytia hemisphaerica|type=transcript|length=2752bp|location=Sequence derived from alignment at sc0002012:5639..8390 (Clytia hemisphaerica)
TATCCATCGTCAAGATTGATCTGCAGAAGTAAAATTAAGATATAAAGTAG
ATAGCATTGGGTTTTAACCATTTACAAATCACGTTTTGGAAAGTCCCACA
TAAGCAATAATAGTCATTAGAAATACTCAACTTGCTAGTAGATTAAAGCA
CTCGAAAACGATATAGCTAAATAATAAAGTTGAATTTCAAACTTTTGTGA
TTAGTTGATCTCCAGAAGCATTCACCAATCtatggacgaaaaaaaaaaga
agttaaaaagacatcaaaagaatcagtgtcaatcttttttatttaaaatg
agtttgaaaccAACACGAGTCATCGTGGCTGACCTCCCTACACCCCTAAT
AGTCAGCCCATAACCACACCTTAGTACGATGACTCGTAATGCAACCattc
aaaatttacaataagACATGGATTGCGAAGATTTACTTCAACAATACTAA
GAGATCCATCTACAGTCCTGCAAGAGGAATCTTTATTCCAGCGATAAGAT
AAGCTTGTAGTGCAGACAACAGTTGAGGAACTGTGTCAAAATTGGGCGCC
GTGTACTAATATTCCACTATTATGGCACAAAGCTCGTCTTGGTAACAACA
CAATGTAATGGCCTGTGTGTCATGGGATGGGCGCCGGGACTCCAGGAGCT
ATCTCCAGGTCCCTATTCGTCATGATGGCTGGAAAGTGATTCCAACTCGC
TCTTGCTTTTTTAAGTTGGAAATGAAATGCTGGAGAGAAGTTCTTCAGGA
CATTATTATATATGATGATGACAATTCTGGAGTAACAAATAAGAGCTGTA
AATTCATGTCATGTAAATTTTGAATGGGGACACGAATGGTTCGATTTTGT
GTCCTATTCTTACCCATCCGATGGAAAACTTATTGGCGATGAGTCGATTT
GCAAAGCAAACATGGACAACTATCATCATTTCTTCTACAAACAGTGGaaa
tgattccatcattacaaaCAGAGTCAAATCGATTCAGCAGGTTTAGATAA
GAATCGATGTCTTCCATGTAGTGAGAATATTGTGCGATGGTTTCGTCGGA
CATTGTATTCAATCTCTCTTCTTCTTGTCTCCTTCCTGGCATATCTGGAT
GATTGTTAAAGTATAAAATTCTTTCCATCGGTAGTTGGTCGACCAAACAC
CATCTTCGATCAGACTCTACTCTACTGAGAGCTGTGTAAGTCGTTCCGAG
TGAGAGGGCTTCCATGAAAATCTTTTCTTGGAGTTTTACTCTCATATGAG
TTGCTGCTTTACCTTCACCGACAGTCATTCCCTGACTTTTTGCTATAGGA
ATGCTATAAGCGGCAATTAACGGCAGACAAGTACGAGTGCAAGAGTCGTG
GACATCGCAGATTGTTTTCATTGGAACGACTGGAACCCATTTGGGGTGAC
CTTCTAACCAAACAGGTCCTCTGTAACTTTCGAAGTTAACAATAACAGCA
TCTGGCATGGAAGGTGGCTGGATTCCATCCGGATAAAGGATTGCAATAAC
CGTACCAATGGCTCCATTATTTAGACCAAAAGTGGTTAAGGGCCCTTGGT
TCTTGGTGAGCATGACAGGGCAACCCACAGCAATAAAAGAAATGCCTGGT
ATCTGACCCATTTGTTTTTCACCAGTAGTTTTATGACATCTACCTCTTCC
TTCTGTACAAGGAATCGTGGCAACTGGAACACCCAAACCGGCAAGTTTTT
CTCGGTTTTCATCAAATACTTCTTGCCATGTTTCATTAAGGGTTATAACA
CGTCCATTATTGAATTCATCCTTTTCTTCTTGTGACATATTCTTCTCGTG
CTTTGCGTTGATATCCAGCCAATCTTGTTGAGTTATATTACCGGATCGAA
TTCGTAACAATCTTTCGAGTAGAGATTTTTGATCGGGTTTTTGACGCATT
GTTTGATCCAAAAGAATGCATTGGGTGAAATTACGATATATGCCATGGCC
CTTTAAATTTTCTGGTGTTGCGTTCTTTGATGGATGGATATGTAAATCTT
TACCTTCTATTGGACCAAGTTGCCCAAGATCGCCAAAGAAGTTAACGACT
GGAATATTCCCAAAATCGTGATCGAAATCCCCGGTGGCTTCCATCATTCT
CTggttacaccacgccagcaaccTTGGAGAATACATGGATCGTTCATCCA
TATTCAATGTGTGCAAGCCATGACTCTGAGTTTCTTTGTTAAAACCGATC
ACTTTGTGTAGCTTATCCAACTTCTTACTGTTCATTGGCCGATCTGTCAT
GTTGAGGGTACTTCTTTCTTTACGAGAGACGAAGGGGATAGGAGTGGTAC
TGTGGAGAGTTCTTCCATCTGGAATCAAAGTAGATGCTGCACCAGTTGGA
GCAATATTGAGTGTTGATCCGTTTCGTCTGAATAAACGCCTGGTAATGTA
TGTAATGGCATTTATTGTGAAGGTCTTCCCAGTTCCGCCATAGCCCTGTA
CAAGGAGGCGTAAGGGCTCTGAGCTGTTTTCACCGGAGGCGACATCTAAA
AGCTTCTCCAAGTTGATTGCTATGACGAGTCTTTGTTTCGGATTGGCCCA
TAAGAGATTGACGTCTGGGAGATTGAGGTTGTTAAGGTGAGTGTTGATAC
TCTCTTCTGCTTCCTTATCCTTGTCTTTTAACCAAGTTTTGGTGTTTTCA
GGCCATTCATCAGATCCAAAACAGTCTTTGGCATAAGCGTTCCAATCAAA
TCCTGGCCCACCATTAAAGAGGTTTGCTTCgccaatgatggaatcaaaat
TT Coding sequence (CDS) from alignment at sc0002012:5639..8390 >TCONS_00039097 ID=TCONS_00039097|Name=TCONS_00039097|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0002012:5639..8390 (Clytia hemisphaerica)
TTATTGGCGATGAGTCGATTTGCAAAGCAAACATGGACAACTATCATCAT
TTCTTCTACAAACAGTGGaaatgattccatcattacaaaCAGAGTCAAAT
CGATTCAGCAGGTTTAGATAAGAATCGATGTCTTCCATGTAGTGAGAATA
TTGTGCGATGGTTTCGTCGGACATTGTATTCAATCTCTCTTCTTCTTGTC
TCCTTCCTGGCATATCTGGATGATTGTTAAAGTATAAAATTCTTTCCATC
GGTAGTTGGTCGACCAAACACCATCTTCGATCAGACTCTACTCTACTGAG
AGCTGTGTAAGTCGTTCCGAGTGAGAGGGCTTCCATGAAAATCTTTTCTT
GGAGTTTTACTCTCATATGAGTTGCTGCTTTACCTTCACCGACAGTCATT
CCCTGACTTTTTGCTATAGGAATGCTATAAGCGGCAATTAACGGCAGACA
AGTACGAGTGCAAGAGTCGTGGACATCGCAGATTGTTTTCATTGGAACGA
CTGGAACCCATTTGGGGTGACCTTCTAACCAAACAGGTCCTCTGTAACTT
TCGAAGTTAACAATAACAGCATCTGGCATGGAAGGTGGCTGGATTCCATC
CGGATAAAGGATTGCAATAACCGTACCAATGGCTCCATTATTTAGACCAA
AAGTGGTTAAGGGCCCTTGGTTCTTGGTGAGCATGACAGGGCAACCCACA
GCAATAAAAGAAATGCCTGGTATCTGACCCATTTGTTTTTCACCAGTAGT
TTTATGACATCTACCTCTTCCTTCTGTACAAGGAATCGTGGCAACTGGAA
CACCCAAACCGGCAAGTTTTTCTCGGTTTTCATCAAATACTTCTTGCCAT
GTTTCATTAAGGGTTATAACACGTCCATTATTGAATTCATCCTTTTCTTC
TTGTGACATATTCTTCTCGTGCTTTGCGTTGATATCCAGCCAATCTTGTT
GAGTTATATTACCGGATCGAATTCGTAACAATCTTTCGAGTAGAGATTTT
TGATCGGGTTTTTGACGCATTGTTTGATCCAAAAGAATGCATTGGGTGAA
ATTACGATATATGCCATGGCCCTTTAAATTTTCTGGTGTTGCGTTCTTTG
ATGGATGGATATGTAAATCTTTACCTTCTATTGGACCAAGTTGCCCAAGA
TCGCCAAAGAAGTTAACGACTGGAATATTCCCAAAATCGTGATCGAAATC
CCCGGTGGCTTCCATCATTCTCTggttacaccacgccagcaaccTTGGAG
AATACATGGATCGTTCATCCATATTCAATGTGTGCAAGCCATGACTCTGA
GTTTCTTTGTTAAAACCGATCACTTTGTGTAGCTTATCCAACTTCTTACT
GTTCATTGGCCGATCTGTCATGTTGAGGGTACTTCTTTCTTTACGAGAGA
CGAAGGGGATAGGAGTGGTACTGTGGAGAGTTCTTCCATCTGGAATCAAA
GTAGATGCTGCACCAGTTGGAGCAATATTGAGTGTTGATCCGTTTCGTCT
GAATAAACGCCTGGTAATGTATGTAATGGCATTTATTGTGAAGGTCTTCC
CAGTTCCGCCATAGCCCTGTACAAGGAGGCGTAAGGGCTCTGAGCTGTTT
TCACCGGAGGCGACATCTAAAAGCTTCTCCAAGTTGATTGCTATGACGAG
TCTTTGTTTCGGATTGGCCCATAAGAGATTGACGTCTGGGAGATTGAGGT
TGTTAAGGTGAGTGTTGATACTCTCTTCTGCTTCCTTATCCTTGTCTTTT
AACCAAGTTTTGGTGTTTTCAGGCCATTCATCAGATCCAAAACAGTCTTT
GGCATAAGCGTTCCAATCAAATCCTGGCCCACCATTAAAGAGGTTTGCTT
CgccaatgatggaatcaaaatT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039097-exon-sc0002012-1491911889:5639..8390 | TCONS_00039097-exon-sc0002012-1491911889:5639..8390 | Clytia hemisphaerica | exon |
| TCONS_00039097-exon-sc0002012-1510915933:5639..8390 | TCONS_00039097-exon-sc0002012-1510915933:5639..8390 | Clytia hemisphaerica | exon |
| TCONS_00039097-exon-sc0002012-1575043694:5639..8390 | TCONS_00039097-exon-sc0002012-1575043694:5639..8390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002012 | supercontig | sc0002012:5639..8390 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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