TCONS_00039095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039095
Unique NameTCONS_00039095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039095 ID=TCONS_00039095|Name=TCONS_00039095|organism=Clytia hemisphaerica|type=transcript|length=854bp
taaacacTATCAGACAGACTATCCTGGTACATCCCCTCAACTTCCTTTTT
GGACTGCAGGTATAGATTGCCACATTCAATCCTCCAAACCAGGCATATTC
TTTTACTACCACTGTTTCGAAAAGTTTACTCGACTAGCCAAATATTGAAG
AAAGATCTGTGATAAATAAATCATGCATTaccatattttttttgattatc
AAGATGAGTTTCAGGCCTTGATATAATGCATGACATTTTACTNACAATGC
TTTACAGCTTAATTATGCTAGATACTAGAAAGAAATCGACTAGAAAAGAT
TCTAGAAGGCCTCTTTTACACCATAGAAAAAAAATggattcaaaagcttt
ttttattttgaaaatatcacATTTTTCAAAGTCGCCAGTGAAAAAAGACT
TGTTTTTNGAAATTTTATCTGTGTATGGAATCGCGTGCTTCAACGAGGAC
CAAAACGTATATCCAGTTCAGACTTATTTTTCGGTTGTAAACATTTTGTA
AAAACGTATTAAGAATTTGCACATTTGTCGTCTCTCTGCTTCTCTTTTTT
CTTAATTATTCGAAAGAGATGTTCAAGATCGTTAACataatattaaaatc
aattttaaatatgctaattatgaaaattatttattaaaagatATATATCG
AAACAACtcacaaataaaaagtttcaaaaagaagaaagagatCCGGCTGT
TGTTTTAAACAATTACTTTTAAGACAAGCGCGTGTCAATCAAATCGTTTT
GAATTATGGTACCTGCTGTTATAACAAGCCCTCTACGGCTCAAAATGAAT
AGGATAAAAGATCGTTGTTTTTCCTTCTCTCTACTTCTATTTCTTTGGTA
AATG
Run BLAST on NCBI

transcript from alignment at sc0002011:19318..20171

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039095 ID=TCONS_00039095|Name=TCONS_00039095|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0002011:19318..20171 (Clytia hemisphaerica)
CATTTACCAAAGAAATAGAAGTAGAGAGAAGGAAAAACAACGATCTTTTA
TCCTATTCATTTTGAGCCGTAGAGGGCTTGTTATAACAGCAGGTACCATA
ATTCAAAACGATTTGATTGACACGCGCTTGTCTTAAAAGTAATTGTTTAA
AACAACAGCCGGatctctttcttctttttgaaactttttatttgtgaGTT
GTTTCGATATATatcttttaataaataattttcataattagcatatttaa
aattgattttaatattatGTTAACGATCTTGAACATCTCTTTCGAATAAT
TAAGAAAAAAGAGAAGCAGAGAGACGACAAATGTGCAAATTCTTAATACG
TTTTTACAAAATGTTTACAACCGAAAAATAAGTCTGAACTGGATATACGT
TTTGGTCCTCGTTGAAGCACGCGATTCCATACACAGATAAAATTTCNAAA
AACAAGTCTTTTTTCACTGGCGACTTTGAAAAATgtgatattttcaaaat
aaaaaaagcttttgaatccATTTTTTTTCTATGGTGTAAAAGAGGCCTTC
TAGAATCTTTTCTAGTCGATTTCTTTCTAGTATCTAGCATAATTAAGCTG
TAAAGCATTGTNAGTAAAATGTCATGCATTATATCAAGGCCTGAAACTCA
TCTTgataatcaaaaaaaatatggtAATGCATGATTTATTTATCACAGAT
CTTTCTTCAATATTTGGCTAGTCGAGTAAACTTTTCGAAACAGTGGTAGT
AAAAGAATATGCCTGGTTTGGAGGATTGAATGTGGCAATCTATACCTGCA
GTCCAAAAAGGAAGTTGAGGGGATGTACCAGGATAGTCTGTCTGATAgtg
ttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023543XLOC_023543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039095-exon-sc0002011-1491911889:19318..20171TCONS_00039095-exon-sc0002011-1491911889:19318..20171Clytia hemisphaericaexon
TCONS_00039095-exon-sc0002011-1510915933:19318..20171TCONS_00039095-exon-sc0002011-1510915933:19318..20171Clytia hemisphaericaexon
TCONS_00039095-exon-sc0002011-1575043694:19318..20171TCONS_00039095-exon-sc0002011-1575043694:19318..20171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002011supercontigsc0002011:19318..20171 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.302006	0.216019	0.0627866	0.48939	20.5835	15.6826	17.7791	20.9711	10.6061	9.0483	6.76899	8.13113	7.10727	8.92043	2.61876	2.07643	4.29396	4.29237	7.52789	8.77626	12.8039	9.95543	4.29174	4.61031	4.78351	5.03915	8.33345	5.91105	3.97835	4.41343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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