TCONS_00039085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039085
Unique NameTCONS_00039085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039085 ID=TCONS_00039085|Name=TCONS_00039085|organism=Clytia hemisphaerica|type=transcript|length=2367bp
GTTTTGGAATACAAATACTAATATGGTATTAAAAAACGAACTAAAATATG
tgtacaggaaaaaaataaaaaggtttattttgatattttatttaaaatga
aagacaaaGCATGTTTCCATgactaaaaatgataaaatgcaAATGTAAAA
AGAGCTAGAGGAATATATGCAGCACAGCTATACTTTAAGCATGAGCCTGA
TATCCACTACATGTGTATGAAGGACAGAAGGCCAACTCCAGCAGGAGGGG
GGAGCCTCCTGGACGAGCTTTCTGATCTGGAGTTGACCAAGACAAAGTCA
AACAAACCAAGATTGATTTTAAATACCGACAACCAACACTACTAACATGC
ATAAACCTAGGAATTCTAAGCTGGTAGACTTNCAAAAACACCCTGTTTAT
AGACCAGACCTACTTAACAAGGCTTGACCAGGCTTCTAAACCATATTTGT
TAAAGTTTATTCTGAAAGTGCATACTTTCTTTAGACATTGATAGAAATAA
TTTCGAGCagaatattttgattggttgaattatttcaaaaatatgaaaaa
gatttCAGCATAAAAATGAACCTTTTAATCCAGGAATAACTATGGAAAGT
ATTTTGAACAATTCTAGATATCAACATAAAAAAATCTGCTTTAATGATTC
TAGTCTGATGGCTTGCTAGGGTGAAAAAAATGCAAAGTCTGTTCTCATTT
TTATTTGGCTCTCAAAGTGAAAGGATATCTAGAATTTAGGATAGCTATGT
CGTatataaaatgttattttctatGCCGGAAtctctgaaaaatgaaaagc
agGGATCAGAATATTTCTATTGGGTCAAAGAATATTGTACTCGACTGGAT
CCCTTCATTTCTCATCTTCATTAGAAGTATCCTGAAATAtttcaacaaat
tcaaaattttaactttgtttCTATAGTTTAGAGCTGAAGATGATACTAGA
TATCGAAATATATTCTCAACAAAATAACACCAATCCATTGTTGGTTTCat
tgaaacaaaaaacaaaaagttgaagATTTCTTGGATGAGATGTCATTTCG
CCCAAAAAGACTATTGTAAAGTATTGCTTTGTGTTACACATTTTAATAag
taaaatgctaaaaaatagtaaaatcatTTAGATGTCGGATTAGATTTATT
GTTTCTTTTAGCATTTAATTGCTTTCTATGGGAATGCTCTCCTTTATCTG
ACACTTTGTCCTTGTATTTTTGTCTTAACCCATCCACCCAAGCTCTGACA
AATGCCTTGCCACGTATGTCAATCCATTGTACAACAACCAACTTAAACAA
ACTCTCTTTTTCAATTGAGTCCAGCTCATCACCTTTCATTAGCTCATCCC
AGCGATAAATTACATATTTCCGTTTGTAAATTCTCTCTTTGATcaattct
ttcaaattctcaCCAGCATAGTTATTTAATGTCACAGGATTGAAGACGTC
ACGTACAGAATACTCAATAGCCCgaaagaataaaaaacaattgtCACTAA
CATGCACTAATCCACCACGATCCCGGAGGTCAATCCATTTGTTTTTGAAC
TCAAAACATTTTGCTTTCTTCCCAGTGCTCCATGTTTTGATAGCTGCAAT
AAATTGTTCCCCCTCACTGCCTTTTCGTTTGTAGTACTTTTTTGCTGAGT
GTGCAATAAATCCGGCAACATAATTCACAATATTCTGCTCACGATCATCC
ATTTTCTCTCTTCCATTATTAGATGCAGAGGATGTAGTTGATGATGACTC
AGCTATGTATGATTCGATGTTGGCGGTGATTAGCAattccaaaagttttg
aagttaaCCTGTAAGTAAGTATATCAAAATTTACCACTGTCGATATTTCC
TCCAAATGCGTTAAGTCAACTTTAGATTCGTTTGAACTAAGGTATCCATA
AAATCTTTGCCACATGAGTTTTCTTCCCTCTGAAATAAGGGACGTTGTTG
GGAGAGAAAGTTCGATCATGGTGTAAAGTTTCATTGTTATCTTTAAGTTA
AACATATGAGAATCTGATAAATTTGATAACATATTGGCTAAAGTATCTTT
TCGTTTTTCAACTATTTCTTTACTCCCAATGAAATAATACATGTCTTCTT
GCAAGGTAATGACAGCTTTTCGCCACAACTCATCAGACTTAGACTCGACA
TCCTGAGATGTGAgcttcaaaacaattttaggCAGTGTTTTTTTAGAATC
GTCTGAAGCGCCAACTTGTGCATGGATTAAGTTCAAATTTGGATCGGCTC
CACTGATAATTAACTGAGCAAGCTCATCTGGAATGAAGTTTATTATAACC
TCATCTAAATCATCATCAAAAAAGTCTTCATTAGCAGTGGTAACTGAAGC
AGCAGTAGATGTGGAAG
Run BLAST on NCBI

transcript from alignment at sc0002008:901..3662-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039085 ID=TCONS_00039085|Name=TCONS_00039085|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at sc0002008:901..3662- (Clytia hemisphaerica)
GTTTTGGAATACAAATACTAATATGGTATTAAAAAACGAACTAAAATATG
TGTACAGGAAAAAAATAAAAAGGTTTATTTTGATATTTTATTTAAAATGA
AAGACAAAGCATGTTTCCATGACTAAAAATGATAAAATGCAAATGTAAAA
AGAGCTAGAGGAATATATGCAGCACAGCTATACTTTAAGCATGAGCCTGA
TATCCACTACATGTGTATGAAGGACAGAAGGCCAACTCCAGCAGGAGGGG
GGAGCCTCCTGGACGAGCTTTCTGATCTGGAGTTGACCAAGACAAAGTCA
AACAAACCAAGATTGATTTTAAATACCGACAACCAACACTACTAACATGC
ATAAACCTAGGAATTCTAAGCTGGTAGACTTNCATGAACTACTAGATGTT
TTGGAATACAAATACTAATATGGTATTAAAAAACGAACTAAAATATGTGT
ACAGGAAAAAAATAAAAAGGTTTATTTTGATATTTTATTTAAAATGAAAG
ACAAAGCATGTTTCCATGACTAAAAATGATAAAATGCAAATGTAAAAAGA
GCTAGAGGACAAAATATGCAGCACAGCTATACTTTAAGCATGAGCCTGAT
ATCCACTACATGTGTATGAAGGACAGAAGGCCAACTCCAGCAGGAGGGGG
GAGCCTCCTGGACGAGCTTTCTGATCTGGAGTTGACCAAGACAAAGTCAA
ACAAACCAAGATTGATTTTAAATACCGACAACCAACACTACTAACATGCA
TAAACCTAACAATTCTAAGCTGGTAGACAAAAACACCCTGTTTATAGACC
AGACCTACTTAACAAGGCTTGACCAGGCTTCTAAACCATATTTGTTAAAG
TTTATTCTGAAAGTGCATACTTTCTTTAGACATTGATAGAAATAATTTCG
AGCAGAATATTTTGATTGGTTGAATTATTTCAAAAATATGAAAAAGATTT
CAGCATAAAAATGAACCTTTTAATCCAGGAATAACTATGGAAAGTATTTT
GAACAATTCTAGATATCAACATAAAAAAATCTGCTTTAATGATTCTAGTC
TGATGGCTTGCTAGGGTGAAAAAAATGCAAAGTCTGTTCTCATTTTTATT
TGGCTCTCAAAGTGAAAGGATATCTAGAATTTAGGATAGCTATGTCGTAT
ATAAAATGTTATTTTCTATGCCGGAATCTCTGAAAAATGAAAAGCAGGGA
TCAGAATATTTCTATTGGGTCAAAGAATATTGTACTCGACTGGATCCCTT
CATTTCTCATCTTCATTAGAAGTATCCTGAAATATTTCAACAAATTCAAA
ATTTTAACTTTGTTTCTATAGTTTAGAGCTGAAGATGATACTAGATATCG
AAATATATTCTCAACAAAATAACACCAATCCATTGTTGGTTTCATTGAAA
CAAAAAACAAAAAGTTGAAGATTTCTTGGATGAGATGTCATTTCGCCCAA
AAAGACTATTGTAAAGTATTGCTTTGTGTTACACATTTTAATAAGTAAAA
TGCTAAAAAATAGTAAAATCATTTAGATGTCGGATTAGATTTATTGTTTC
TTTTAGCATTTAATTGCTTTCTATGGGAATGCTCTCCTTTATCTGACACT
TTGTCCTTGTATTTTTGTCTTAACCCATCCACCCAAGCTCTGACAAATGC
CTTGCCACGTATGTCAATCCATTGTACAACAACCAACTTAAACAAACTCT
CTTTTTCAATTGAGTCCAGCTCATCACCTTTCATTAGCTCATCCCAGCGA
TAAATTACATATTTCCGTTTGTAAATTCTCTCTTTGATCAATTCTTTCAA
ATTCTCACCAGCATAGTTATTTAATGTCACAGGATTGAAGACGTCACGTA
CAGAATACTCAATAGCCCGAAAGAATAAAAAACAATTGTCACTAACATGC
ACTAATCCACCACGATCCCGGAGGTCAATCCATTTGTTTTTGAACTCAAA
ACATTTTGCTTTCTTCCCAGTGCTCCATGTTTTGATAGCTGCAATAAATT
GTTCCCCCTCACTGCCTTTTCGTTTGTAGTACTTTTTTGCTGAGTGTGCA
ATAAATCCGGCAACATAATTCACAATATTCTGCTCACGATCATCCATTTT
CTCTCTTCCATTATTAGATGCAGAGGATGTAGTTGATGATGACTCAGCTA
TGTATGATTCGATGTTGGCGGTGATTAGCAATTCCAAAAGTTTTGAAGTT
AACCTGTAAGTAAGTATATCAAAATTTACCACTGTCGATATTTCCTCCAA
ATGCGTTAAGTCAACTTTAGATTCGTTTGAACTAAGGTATCCATAAAATC
TTTGCCACATGAGTTTTCTTCCCTCTGAAATAAGGGACGTTGTTGGGAGA
GAAAGTTCGATCATGGTGTAAAGTTTCATTGTTATCTTTAAGTTAAACAT
ATGAGAATCTGATAAATTTGATAACATATTGGCTAAAGTATCTTTTCGTT
TTTCAACTATTTCTTTACTCCCAATGAAATAATACATGTCTTCTTGCAAG
GTAATGACAGCTTTTCGCCACAACTCATCAGACTTAGACTCGACATCCTG
AGATGTGAGCTTCAAAACAATTTTAGGCAGTGTTTTTTTAGAATCGTCTG
AAGCGCCAACTTGTGCATGGATTAAGTTCAAATTTGGATCGGCTCCACTG
ATAATTAACTGAGCAAGCTCATCTGGAATGAAGTTTATTATAACCTCATC
TAAATCATCATCAAAAAAGTCTTCATTAGCAGTGGTAACTGAAGCAGCAG
TAGATGTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023533XLOC_023533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039085-exon-sc0002008-1575043694:3280..3662TCONS_00039085-exon-sc0002008-1575043694:3280..3662Clytia hemisphaericaexon
TCONS_00039085-exon-sc0002008-1575043694:901..2884TCONS_00039085-exon-sc0002008-1575043694:901..2884Clytia hemisphaericaexon
TCONS_00039085-exon-sc0002008-1510915933:3280..3662TCONS_00039085-exon-sc0002008-1510915933:3280..3662Clytia hemisphaericaexon
TCONS_00039085-exon-sc0002008-1510915933:901..2884TCONS_00039085-exon-sc0002008-1510915933:901..2884Clytia hemisphaericaexon
TCONS_00039085-exon-sc0002008-1491911889:3280..3662TCONS_00039085-exon-sc0002008-1491911889:3280..3662Clytia hemisphaericaexon
TCONS_00039085-exon-sc0002008-1491911889:901..2884TCONS_00039085-exon-sc0002008-1491911889:901..2884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002008supercontigsc0002008:901..3662 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0463156	0.09033	0.0767237	0.128628	0.388573	0.112616	0.160583	0.435491	0.65642	0.556315	0.580106	0.204718	0.295946	0.334301	0.287035	0.117254	0.19797	0.173214	0.927681	0.630463	0.549713	0.306855	0.131114	0.250788	0.0389511	0.217517	0.329875	0.193154	0.267031	0.0820852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top