TCONS_00039082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039082
Unique NameTCONS_00039082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039082 ID=TCONS_00039082|Name=TCONS_00039082|organism=Clytia hemisphaerica|type=transcript|length=850bp
AGGCATGTTGTTATATTTTCTGAGAAAATTaggacaaaaaaatacaaaaa
aaaatatttaaaaaaatataaaggcaCTCTATCCTATCCGCCTGAGAGGC
TACTTGAGTACTCCGAAAGCGAAGCCTTTCACTAGTGAACATTCTTAGAC
TGAGACAAAGGAAAGGAAAAGCAGAAATGCCACCACCATTTTCCCGATGA
ACTAATACTCGAATATGTAAATGTGGCAATTCATTATTTTTAGACCCTCG
TCTTTACTTTTCATCACTGTAGCCGTTTAACTTTTGATATTCCATTCCTG
ACCAAATTAGCACAACAAACGTTACTTTTCATGAgatcaatgacgtcatt
ttgacaGCGAAAAAAATCTGACAACTTTCAACATTATTTTTCTGATGTCA
AAATGACTTCATGGATCGCATAAATTGCCGAATAGCTTGTTTAAGTATTT
CAAGAAATTATTCGACCTCCAACCTCGGAAATCTTCCGATTCAAAGACTT
TTAGATAAAAGGATcgttttttgatgatttcgtcTCAGAGATAGCGGGGT
CAGGCACACGGCACTATTTGACTTACGAACCCATCGTCTGGAATTTTCAC
CAAGATTCGAACTTTCTCTTATTCAACAGGGAAGTGACCTATCTTATGAG
ATGTCGGAAGAGAAAGCAGTACTAATTCTATCGCGTGACCATTTACTGTa
acttcacaaaaatttatttccttCATCAACTTCAAAATCGTTCAAAAGGT
TTTACCGAACTTGGATAATTTCCTCGAAGTGCTTCGCAGCGTAGGGTGTG
ACTTAATTGAGGGTTTTTACGATTTACATAAACGTATTTTTGGGGATANN
Run BLAST on NCBI

transcript from alignment at sc0002007:9281..10130

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039082 ID=TCONS_00039082|Name=TCONS_00039082|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0002007:9281..10130 (Clytia hemisphaerica)
NNTATCCCCAAAAATACGTTTATGTAAATCGTAAAAACCCTCAATTAAGT
CACACCCTACGCTGCGAAGCACTTCGAGGAAATTATCCAAGTTCGGTAAA
ACCTTTTGAACGATTTTGAAGTTGATGaaggaaataaatttttgtgaagt
tACAGTAAATGGTCACGCGATAGAATTAGTACTGCTTTCTCTTCCGACAT
CTCATAAGATAGGTCACTTCCCTGTTGAATAAGAGAAAGTTCGAATCTTG
GTGAAAATTCCAGACGATGGGTTCGTAAGTCAAATAGTGCCGTGTGCCTG
ACCCCGCTATCTCTGAgacgaaatcatcaaaaaacgATCCTTTTATCTAA
AAGTCTTTGAATCGGAAGATTTCCGAGGTTGGAGGTCGAATAATTTCTTG
AAATACTTAAACAAGCTATTCGGCAATTTATGCGATCCATGAAGTCATTT
TGACATCAGAAAAATAATGTTGAAAGTTGTCAGATTTTTTTCGCtgtcaa
aatgacgtcattgatcTCATGAAAAGTAACGTTTGTTGTGCTAATTTGGT
CAGGAATGGAATATCAAAAGTTAAACGGCTACAGTGATGAAAAGTAAAGA
CGAGGGTCTAAAAATAATGAATTGCCACATTTACATATTCGAGTATTAGT
TCATCGGGAAAATGGTGGTGGCATTTCTGCTTTTCCTTTCCTTTGTCTCA
GTCTAAGAATGTTCACTAGTGAAAGGCTTCGCTTTCGGAGTACTCAAGTA
GCCTCTCAGGCGGATAGGATAGAGtgcctttatatttttttaaatatttt
tttttgtatttttttgtcctAATTTTCTCAGAAAATATAACAACATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023530XLOC_023530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039082-exon-sc0002007-1491911889:9281..10130TCONS_00039082-exon-sc0002007-1491911889:9281..10130Clytia hemisphaericaexon
TCONS_00039082-exon-sc0002007-1510915933:9281..10130TCONS_00039082-exon-sc0002007-1510915933:9281..10130Clytia hemisphaericaexon
TCONS_00039082-exon-sc0002007-1575043694:9281..10130TCONS_00039082-exon-sc0002007-1575043694:9281..10130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002007supercontigsc0002007:9281..10130 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57936	1.43188	1.0101	0.300074	2.23037	0.954392	2.74523	3.46038	3.87534	4.17942	9.42367	3.85204	3.00365	3.26953	2.3667	3.05919	2.79531	3.9029	1.23155	0.939478	5.14202	5.5696	5.72161	4.45205	1.82481	4.65521	2.67361	5.01674	2.70691	2.5897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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