TCONS_00039070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039070
Unique NameTCONS_00039070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039070 ID=TCONS_00039070|Name=TCONS_00039070|organism=Clytia hemisphaerica|type=transcript|length=371bp
ATTTACTAACAatcgtaaaaataaaaaaagcagATACTTGAATTATTGGA
TGTATTGTTGAATGTTTAAAAATGTCTCAAAAACGCAAACTTTCACAGAT
TGAGAAGATTATGCTGTCTAAAGAAATTTTGCAACAATTCATAGCTGAAA
ACATTCCTGGGTATAAAATATATCCTGTCAGTGGAGAATCAGATGGGTTA
TGTATGATCAGCTCATTATCAATTTCTCTTTCCCACGTTTTAAAAAGGCA
TGTTACAAATAAAGATGTAGAAAATGTAATACGGAAAGAAGCATTTGAAA
ATCAAGGTTTTTATGTAGACTTTGCACCTGGTGTAAACATATTAgaagaa
ttggaaaattttttgaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00039070-protein

>TCONS_00039070-protein ID=TCONS_00039070-protein|Name=TCONS_00039070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSQKRKLSQIEKIMLSKEILQQFIAENIPGYKIYPVSGESDGLCMISSLS
ISLSHVLKRHVTNKDVENVIRKEAFENQGFYVDFAPGVNILEELENFLKN
Run BLAST on NCBI

transcript from alignment at sc0002005:13895..14561-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039070 ID=TCONS_00039070|Name=TCONS_00039070|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0002005:13895..14561- (Clytia hemisphaerica)
ATTTACTAACAATCGTAAAAATAAAAAAAGCAGATACTTGAATTATTGGA
TGTATTGTTGAATGTTTAAAAATGTCTCAAAAACGCAAACTTTCACAGTA
AGTGTTTTTATTGTTATTTCTTATACAGATTTACCTTTTACTGATTAATA
AAGTGTGATTTCAAAACCTGTACTCCTGTGTTGTGGTTTATTTTTAAAAG
AATAAAAGGCTTAAATAAATTTTTGCTGGCTGTAAAGTTTCTGAAATGTA
ATTTCAACACCTGAACTTTACTGAGGATGGGGAAAAATACTTTTTCCTGG
GTTGAATAACTTATTTGGTAGAAGAAATAAACAGTGGTTGTCCTGGACAG
TAAGGTTCACTTTCTAACTTGGAATTTTCATCTCATCATCTAGGATTGAG
AAGATTATGCTGTCTAAAGAAATTTTGCAACAATTCATAGCTGAAAACAT
TCCTGGGTATAAAATATATCCTGTCAGTGGAGAATCAGATGGGTTATGTA
TGATCAGCTCATTATCAATTTCTCTTTCCCACGTTTTAAAAAGGCATGTT
ACAAATAAAGATGTAGAAAATGTAATACGGAAAGAAGCATTTGAAAATCA
AGGTTTTTATGTAGACTTTGCACCTGGTGTAAACATATTAGAAGAATTGG
AAAATTTTTTGAAAAAT

Coding sequence (CDS) from alignment at sc0002005:13895..14561-

>TCONS_00039070 ID=TCONS_00039070|Name=TCONS_00039070|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0002005:13895..14561- (Clytia hemisphaerica)
GATTGAGAAGATTATGCTGTCTAAAGAAATTTTGCAACAATTCATAGCTG
AAAACATTCCTGGGTATAAAATATATCCTGTCAGTGGAGAATCAGATGGG
TTATGTATGATCAGCTCATTATCAATTTCTCTTTCCCACGTTTTAAAAAG
GCATGTTACAAATAAAGATGTAGAAAATGTAATACGGAAAGAAGCATTTG
AAAATCAAGGTTTTTATGTAGACTTTGCACCTGGTGTAAACATATTAGAA
GAATTGGAAAATTTTTTGAAAAATATGTCTCAAAAACGCAAACTTTCACA
GATTGAGAAGATTATGCTGTCTAAAGAAATTTTGCAACAATTCATAGCTG
AAAACATTCCTGGGTATAAAATATATCCTGTCAGTGGAGAATCAGATGGG
TTATGTATGATCAGCTCATTATCAATTTCTCTTTCCCACGTTTTAAAAAG
GCATGTTACAAATAAAGATGTAGAAAATGTAATACGGAAAGAAGCATTTG
AAAATCAAGGTTTTTATGTAGACTTTGCACCTGGTGTAAACATATTAGAA
GAATTGGAAAATTTTTTGAAAAATATGTCTCAAAAACGCAAACTTTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023518XLOC_023518Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039070-proteinTCONS_00039070-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039070-exon-sc0002005-1575043694:14465..14561TCONS_00039070-exon-sc0002005-1575043694:14465..14561Clytia hemisphaericaexon
TCONS_00039070-exon-sc0002005-1575043694:13895..14168TCONS_00039070-exon-sc0002005-1575043694:13895..14168Clytia hemisphaericaexon
TCONS_00039070-exon-sc0002005-1510915933:14465..14561TCONS_00039070-exon-sc0002005-1510915933:14465..14561Clytia hemisphaericaexon
TCONS_00039070-exon-sc0002005-1510915933:13895..14168TCONS_00039070-exon-sc0002005-1510915933:13895..14168Clytia hemisphaericaexon
TCONS_00039070-exon-sc0002005-1491911889:14465..14561TCONS_00039070-exon-sc0002005-1491911889:14465..14561Clytia hemisphaericaexon
TCONS_00039070-exon-sc0002005-1491911889:13895..14168TCONS_00039070-exon-sc0002005-1491911889:13895..14168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002005supercontigsc0002005:13895..14561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20145	0.427116	0.247961	0	1.7489	0	2.41274e-07	0.796979	2.07769	1.95022	2.52672	1.12253	1.1363	0.924777	0.373064	0.815884	0.183746	0.53472	2.11009	0.851038	2.27495	1.04458	1.12796	1.68003	0	0.533417	0.482173	0	3.00685	0.411339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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