TCONS_00039047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039047
Unique NameTCONS_00039047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039047 ID=TCONS_00039047|Name=TCONS_00039047|organism=Clytia hemisphaerica|type=transcript|length=2420bp
TTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACGA
CGCGGAAGAAGgatCAGAATCTAACGACGACgaagaaagagaaagagaag
CAGGAACAGATATGTTGATTGATGACACGAGCATGAAAATTGCAATTCAG
ATCATCAGAATATCTCTCAATCAATTATGTATCATTGGGACAGGCACAAC
GCTGGAAAAGGTCGTTATTCCGGATGAAGACGACTCTGGGATCGACTTCG
ATTTGGTCAGAAGAGTCGTCAACATATCCGGAGACATGGTGTCGTTCACT
AAACTGGTGTCCGAAAAATTTGGCAATGCGTATGTTGTTAAGCAGAAGAA
GAAAAACGCAAAGTTTACCGTCGGCACTTTGGTGACGGCAATATTTTCCT
ATCTGGAAAACAAGAAAATCTGCAAGATCGTGCAATTAAGATGTAATAAA
GGCACCGGCAACAACAAGTTGGCAATCTTTCTGGAAAAATCTTCCCCAGA
GAACATGCCACAAGAGCTGAAAAACAATCTTGTTAAAATCGGCATGTCGT
CTAAAGAATACGCCACAGTCTTCAACGATATGGAGGACGAAAATGGGAAA
GCCCATAGAGAACAGTTTCTATCGAAACAAAAATGGCAGAGGGTAGAAGA
TGGTCAGACACCACAGAAGCGGCGAAGGCTTGAGTTTGATGATGCTGATG
GTGATGATGTTGGAAATTAAAAGTAATTTGGACAGTCAGGACAgtctttt
gttttttagtttcttgttttttttctgattttggtattgtataattaaaa
aaaaaactaaaaaaaactttaacttCCAGATCTGCGGATCTGCGATAATA
AAAATGATATACGGTCACTTTTACGTACGAAACTTACTAAATATAACCAT
GATATTTTTTGTCGAATCAATTTTGAGCAGTTGATTCAAATGGGGAGAAA
TCCCCGAACAAATAAGTTTTTTCTTGTTTATGGTGTTAGCCCGAAACCAT
TATTCATAACTTTATATATAACTATGCATACTAGTAGTTTGTAATGTAAC
TTATTTTCTTATTGTTTTGTAAAAAAGATTCACATGTCAGataaaatcaa
tcaaacgtaTCAAATCTTAAGAAATTCTTCTGTTTTGGCTTCGTTGACAG
TCCAGGATGATCagggtcaaaatgcttgcatCGTTACAGATGATTGTTAA
GAGCTCGTTTTGGTCTTAAAGAAGCATATCAATTCATAGAAAATTATACG
CCAAGTCCCCttattgatcaaactgatcaaaaagatcaaaatccacgagg
gcccctatgcccctatacccactatgtctcaaatggactatgggctttgt
tcaatttgtgtctttttgacgtcaagttccctaattgatcaaactgatcg
aaaagatcaaaatccacgagggcccctatgcccctatacccccctatgtc
tcaaatagactatgggcttagttcaatttgcttctttttgcccCTATCCT
ATACATTCTATGTCTCAAATAGACTATGGGCTTaattcaatttgcttctt
tttgacttcaagttccctaattgatcaaactgatcaaaaagatcaaaatc
cacgaggacccctatgcccctataccgcctatgtctcaaatggactatgg
gcttagttcaatttgcttctttttgacttcaagttccctaattgatcaaa
ctgatcaaaaagatcaaaatccacgagggcccctatgcccctataccccc
ctatgtctcaaatagacTGTGGGCTtggttcaatttgcttctttttgact
tcaagttccctaattgatcaaactgatcaaaaagatcaaaatccacgagg
acccctatgcccctataccgcctatgtctcaaatggactatgggcttagt
tcaatttgcttctttttgacttcaagttccctaattgatcaaactgatca
aaaagatcaaaatccacgagggcccctatgcctctataccccctatgtct
caatANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgcttagttcaatttgcttctttttgacttcaagttccctaattgat
caaactgatcaaaaagatcaaaatccacgagggcccctatgcccctatac
cccccccatgtctcaaatagactatgggcttagttcaatttgcccCCTTT
GCCCCTATCCTATACATTCTATGTCTCAaatagactatgggcttagttca
atttgcttctttttgacttcaagttccctaattgataaaactgatcaaaa
agatcaaaatccacgagggcccctatgcctcTATAcccccctttgtctca
aatagactatgggcttagttcaatttgcttctttttgacttcaagttccc
taattgatcaaactgatcaa
Run BLAST on NCBI

protein sequence of TCONS_00039047-protein

>TCONS_00039047-protein ID=TCONS_00039047-protein|Name=TCONS_00039047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
FLDAALEERATTPEKDDAEEGSESNDDEEREREAGTDMLIDDTSMKIAIQ
IIRISLNQLCIIGTGTTLEKVVIPDEDDSGIDFDLVRRVVNISGDMVSFT
KLVSEKFGNAYVVKQKKKNAKFTVGTLVTAIFSYLENKKICKIVQLRCNK
GTGNNKLAIFLEKSSPENMPQELKNNLVKIGMSSKEYATVFNDMEDENGK
AHREQFLSKQKWQRVEDGQTPQKRRRLEFDDADGDDVGN
Run BLAST on NCBI

transcript from alignment at sc0002000:6..9942+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039047 ID=TCONS_00039047|Name=TCONS_00039047|organism=Clytia hemisphaerica|type=transcript|length=9937bp|location=Sequence derived from alignment at sc0002000:6..9942+ (Clytia hemisphaerica)
TTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACGA
CGCGGAAGAAGGTATGTAGTAAATAAATAGTAATCTTACAGGCTTGTTGG
CTTGTTTTTAATCGCGATAATTATGATTTATAACACATCCaacttttgga
cctaccttgaggTTCTATATTGGGCAGAGATAGGCAATTTTTTTCACCGT
CGAAAATGTaagatttaagaaaaataatgccaagtttttagttttgttca
aaatgtcattttttcatcATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACCTTCCTTTAAATAAGAagaggtcatttagaca
gctaattatcatttttaatgactgaaacgaaaatactgatgtatcatgta
attatgcttctgtttagtttgatttaacttttttgtggcgcacccggtat
aagaTAAAAATCCCtatagaattaaaaaaagcggcgatttccggcatatt
ccaAGCATCTTcgaccggaaaattttttttatctaaaatcgGATACTGTC
ATAcattgggcattgctaatacatctttgtgctaaaaatcagaaaaaaat
aatgagccaatctctagaaagcttaatttccttgtaaatggttaaaggga
atttccccaaaatatgaaaatccgttttttaaggcgaataagaattttcc
gggaaaaaccacttcagccattctttagagaaccttgccctccatctttg
tacaaaaaatcagtaaaaagtaatgacagaattttgcacaaagtccaaaa
aaccctattttaggtagtttttggcccaaatttgccccaaaaaatatttt
ctcaaaaatccggctccgtcacattttggacattgccgttttgcatcatt
gtgccaaaaatcagaaagaaataatGAGCGAATCTctagaaaagctggca
acagacaaactaactaacgaacgaacgaacgaacgaacgaacgaacgaac
atcagttaatttataggacctccgtggtaggtccaaaaattgtaCTATAT
ATGAACTTGTGTCATAAAAATGCATACGTTTACTAGGTctgtagatttag
aacgccatgggtAATCCCTTAGAACATAATCCTAAATTCACACCGATAAA
AAAGAGGCTCACATTTCTACAACTggatatttttcttcaaaatcttcCCC
CGaccgattttcattttttttcagactCAGGCTCAGGGCACTGAGGCAGG
GGtgtgttttttacacaaaagtAAGATaccatgatttttttcttcaggat
CAGAATCTAACGACGACgaagaaagagaaagagaagCAGGAACAGGTATG
GGTAAAACACCTGTGTATCATAGACGATAAAAGCCCTACTTGAAAAAAAT
ACGCCAAAAAGTTGTTCTAGTGCGTAGTGGAAAAGATGAGATTTTGCTAT
CCCAAATTTCCATGTATGTATTTTCTATCTATATCCCTTTTGGGTAAGGA
AAACGAAACGTTGTTTTGAAAGTACAAGGAGAGAATATAAATTTGTTTCT
TCTAGATATGTTGATTGATGACACGAGCATGAAAATTGCAATTCAGATCA
TCAGAATATCTCTCAATCAATTATGTAAGTATGTACTGTTTATTTGTCAT
CTGAGTGACAAAACCTTCATACCAACTTTTCCGTGACCGTGCCTGGCCAT
GGAAAACTGATTTCATATTTCATGAAATCCTGAAGAATCTCGAAATAAAT
TTTCtactttcaaaaattattttaagctAGGATATTGAGAATCAACAATT
AACATCAAAGTTTCTCTAGCCAAAACAATAGTTCGTAGTATCGTAGCATT
ACAACTGATGCTAGGTCAAGCCATAAATCCAGTAAATAAATAATAAGGTA
TTATAAAACAAAGTAAGAAAAAAAGACAGTTTCGCttgtttttctacttt
tttcttttccttccgACAGACAAATGAACCACccgtagaaaaagaaaaaa
cattcgaatcgccataaatttatttgacatTTAATAATTTCTGGGAAGAA
AAGTCATATCTCCTGAAAATAGGTGatcatcaaaacattcgaaagcgttT
TGGAACTATAACAAATTTGTCAACAAGTATTGTCCGAGCTTGCGAGGGCA
ATATTTGATAGAGGTCAATATTTACGGTATTGCCCTCAAAAGCAAGCGCG
cagtgatttttcaaaatattcacacTTTTCGCAAACcaccataacttttg
aacaaaaCAACTTTAGAAGAAAGGTTATATATCTTTGGCCGAAAGTAAAA
GACATCTACTTTCTATCTTTTGAGCCATATCATGATTCTTTGACTGTATT
TTAGTAAAACTTTCACAAGGTTCAACCCTACATTATATGACAGCGAATAA
AAGTCCCATCTGGGTAGAcccaaatttcaaagtcataTTGAATGATGAAA
GAGTTAACTCTCAAAACAACTATTTCACCACCTCCATCTTGAATTTGAAT
GTTTTTCAACTGTTTGTTTTGATCGCACACTTGACCCTAAccctttaaaa
tcaatttttttaaatatcctaAACATTTGATCCTCAAAATAACACAGAAC
TAAATATCATAGCTGAAAACAGAATACATGCTAAAAACGCATATGTGCGT
CCTTCGTATATAGACGCGGACGCTCACGTGTGTCCTTCGTGGGCAAAGGG
TCTAATTCAAAACAACATTCAACTTTCCAATGTATTGAAATGGTACTCCT
GAGTTGGTCGAATTTTataaaagcattgatgatattttttctaaactcTT
TGTAGCACAGAATTTGAAATATGGCTACTTCGTTAATACGTGAAACTGCA
CTAAactttacttacttacttatcaGCACACCTCTGGTTGAGGCTTCGCC
CACTTGTGTACTTTCTCTCGCCATCTGGTTCTGTCACGTGCGTATCGTTC
TGCCGTTGCTAAGGGAAGACCTGTGTCTTCCCTGATTTTATCTTGCCATC
TTTTTCCAGGTCTACCTCTTCTTTGTGTGCCTTGgaattcatttttcaaa
catattttggCTAGACTTTCCTCGGGCAGTCTTGCTACATGCCCAAACCA
AGACACGCGTCTCTTTTTTTATCATATAGACAATTGGCATTTTGAGTTTT
GCTCTCTTACGTAGCCGTTTGAGTGATATCCGGTCTTCGAGTCTAATCCC
CAGTAGAATGGAGCGAATacaattgttttcgaaaactgaGAGCTTGTTTT
CATCAAGCTTTCTTAGAGACCTGGTTTCCGCGCCGTATATTGCGATTGGG
AGAATGAGAGCTTTGTACAGTCGAATTTTAAAAGCATTTGAGACATCTCT
CCTTAATCAGATCTTCTGTTTTAGTTTTCCAAAGGCAATATTTGCAAGTG
CAATTCGTCTTTTGACGTCCGTGGAGGTACTAGGAACATTTGatccaagg
aaaatgaagtctTGAACAGTGTCAACATTTTTATTGTCAATTACAACTGG
CTGAGGGCTGGGTGTTATGGCTTTGCATTTTGTAGCATTGATTTTCATGC
CATACTTCAAACAGGCGTCCTGTAGTTGATTCGTGGAGAGTTGAAGTTTC
TCAAAGACAGCTGACAACTATTGTTCTCGATTTTATAGAGTCGAGATTCG
CCGTCATAACCGTCACTGTGATCCTCGGCATCCCTTTCAAATCAACAAAA
TAAGTTTAGATTGCATTGATTAATTTATCCAGGTATCATTGGGACAGGCA
CAACGCTGGAAAAGGTCGTTATTCCGGATGAAGACGACTCTGGGATCGAC
TTCGATTTGGTCAGAAGAGTCGTCAACATATCCGGAGACATGGTGTCGTT
CACTAAACTGGTGTCCGAAAAATTTGGCAATGCGTATGTTGTTAAGCAGA
AGAAGAAAAACGCAAAGTTTACCGTCGGCACTTTGGTGACGGCAATATTT
TCCTATCTGGAAAACAAGAAAATCTGCAAGATCGTGCAATTAAGATGTAA
TAAAGGCACCGGCAACAACAAGTTGGTAAGAATAATTTTGGATCGACGAA
ATTTTAAAGGGATTACCcgataattttgaaaactcgGTCATCTCTGCCTT
ATCATCGATacatttttatgatattttcttGTTCATTAATTATGGCCCAa
aacgtcagcaaaattttacgtcaAAGTGAGACAAAAAGTCCCACGAAAGT
TCCAATTGTCAAATTGTAACGTCAATTAGGCTAAAAACCTTTGAACACAA
TGGAGACTACAGTTTATATTTCAGTGAAATAGAGCTCCTAACTTTTTAAC
GAATATTTCAACGTATAGCATAAGcaaattttttgcttaaattacTTCAC
TCTATAACATATGTTTTACATAAACTATCGCTCAACCAACGAGCACAAGG
Aaggttttttacgtttttttaaaacagcatgaactttttccatataatta
tCGTTATTTTTGTGCTTAAACTTTCTCGTGAGAAATTGTTAACTAATTTT
ATgtgtttcacggaatttaatttcgcggttgacactcaaaaccgtgaaat
taaattccacgaaaaCTTCTTCCCTTAAGATATGGAATCAGTTTTTTTAT
GACACAGCCAAGAAAAAGTTGGCATGAAGTTATACAATTCTTTAATTGGA
TTGACTGAAAAGGTCCTTACTGCAGAAACATTTTAATAATttcaaaggaa
acaaaaaaaactttaacagGGTAGCTCTTAGCTGAATACATCAATCTCCC
gtttagtgtggtcgtgttacaaaaatacaggctgtttgtaggaaaaaaat
aagatctagctgaaaccttctccagaccttctctataggatgcttatacc
tcaggaaaaatttccctaaaatcccactggtggaacatcccttttttggg
acatttctattttccccaggcaaaatcctaagggcgagattttttgaaca
tttcaaacttatttccagacaatatcattTATACcgttcgaaagctctcg
aaaaactatatataagacttttaaacggttatagcaGATTTCcctaccta
actcgagatatttcatgcgcaatttccacttttcgccacactttggtcaa
aattgaccataaagaGCATCTTCTgtgtgaattatcttgagttaggtaat
gaaatcggctatacccgtttaaaagtcttctatatagtttttcaacagct
ttcgaatggtatacttgaaaatgtctgaaaatgagtttgaaattttcaaa
aaatttcgcccttagggttttgcctggggaaaaaagaaatgtcccaaaaa
gggatgttccaccagtgggattttaggggaatttttcctgaggtataacc
atcctatagagaaggtctggagaaagtttcagctagatcatattgttttc
ccgtaaattatgaTTAACGACCCCACTAGTTCCCAAATTTCTGCTTTAAC
AAATGTAAATGTTACTATTACAGGCAATCTTTCTGGAAAAATCTTCCCCA
GAGAACATGCCACAAGAGCTGAAAAACAATCTTGTTAAAATCGGCATGTC
GTCTAAAGAATACGCCACAGTCTTCAACGATATGGAGGACGAAAATGGGT
ataatgttttatttatttatttatgttttACTTTTTCCATATTTGGAAGT
TTTCTCTAAAATTCTCCTGTACCTCATGTTTCTATGTCCTGCTTACTTTC
AAACAACCAAAAGCCACATTATTTAATAGATCATTAGACGCTTTAATAGA
ATTTGTGCATCGGTTACATGCCATTTTCTTTTCAATGGAATtctgaacaa
tttttttctacaagcaaattttttttgtaatcagTTAAACACACTtgcaa
tttcaaaacattttgcccccccccctcctccTTTGAAAGTTTTTGGGGAA
ACCCCGCCCAACTAACTCTCTCAGACTCGTTTTTGACCAGTGATAGGCAT
TGATGATATTATATGATTTGCAAAATTTCTAGTTTGTTCGGTCAAGTGTC
AAACCGGTCCGTGTTTTACATATAATACTCACTTTCTAGATAACAGGTGG
TTAGAATGACCTGAAATTTTGATAGGAGTCCTACTTTATCATTACTTTAT
CTTATCATGCTAAAAATTTCAACTCAATACCATTTTCATATCCGGAGATG
TCCAAATATAGGGTCATGTGGGCAAAAATGGGTAATTTCGTCCGGACACG
TGACAGTTGGCAAACAATTACCCAACGCCCCGAAACCTTTTGTCAGTGGG
AGCTGACAGACAAAATATTGAAGTGAGAGAAAGTTAGAAGGAGGTCTATT
TTAGGCATAAAAATTATGCCTATCATTGATCCTGAAAGTTTGTCACAAGA
TGTCAATTTATATTTGATGCACACTTGCTAAATTTTATGgcgaaaattct
ttcaaaagttatcgaAACTTTTCGTTTAAGGGGGAGGCTATGTAGGACCC
CAACAAGAAGGAAAATAAGTATTTAGTATAAATGCCGAGAAGAAAGCTAT
TGGAAACGTTTCCTTCTTCTCATCTCTATTATAATGGATGGAAAACCTTT
TTCTGTTACGATCGATTTTGACTACACTGCCAATACAGGATTGCAAGGAG
GCTAAAGGCAATCAATCTTATACCTTTTaataatgattttaattttactt
tctgTTACATTAGGAAAGCCCATAGAGAACAGTTTCTATCGAAACAAAAA
TGGCAGAGGGTAGAAGATGGTCAGACACCACAGAAGCGGCGAAGGCTTGA
GTTTGATGATGCTGATGGTGATGATGTTGGAAATTAAAAGTAATTTGGAC
AGTCAGGACAgtcttttgttttttagtttcttgttttttttctgattttg
gtattgtataattaaaaaaaaaactaaaaaaaactttaacttCCAGATCT
GCGGATCTGCGATAATAAAAATGATATACGGTCACTTTTACGTACGAAAC
TTACTAAATATAACCATGATATTTTTTGTCGAATCAATTTTGAGCAGTTG
ATTCAAATGGGGAGAAATCCCCGAACAAATAAGTTTTTTCTTGTTTATGG
TGTTAGCCCGAAACCATTATTCATAACTTTATATATAACTATGCATACTA
GTAGTTTGTAATGTAACTTATTTTCTTATTGTTTTGTAAAAAAGATTCAC
ATGTCAGataaaatcaatcaaacgtaTCAAATCTTAAGAAATTCTTCTGT
TTTGGCTTCGTTGACAGTCCAGGATGATCagggtcaaaatgcttgcatCG
TTACAGATGATTGTTAAGAGCTCGTTTTGGTCTTAAAGAAGCATATCAAT
TCATAGAAAATTATACGCCAAGTCCCCttattgatcaaactgatcaaaaa
gatcaaaatccacgagggcccctatgcccctatacccactatgtctcaaa
tggactatgggctttgttcaatttgtgtctttttgacgtcaagttcccta
attgatcaaactgatcgaaaagatcaaaatccacgagggcccctatgccc
ctatacccccctatgtctcaaatagactatgggcttagttcaatttgctt
ctttttgcccCTATCCTATACATTCTATGTCTCAAATAGACTATGGGCTT
aattcaatttgcttctttttgacttcaagttccctaattgatcaaactga
tcaaaaagatcaaaatccacgaggacccctatgcccctataccgcctatg
tctcaaatggactatgggcttagttcaatttgcttctttttgacttcaag
ttccctaattgatcaaactgatcaaaaagatcaaaatccacgagggcccc
tatgcccctatacccccctatgtctcaaatagacTGTGGGCTtggttcaa
tttgcttctttttgacttcaagttccctaattgatcaaactgatcaaaaa
gatcaaaatccacgaggacccctatgcccctataccgcctatgtctcaaa
tggactatgggcttagttcaatttgcttctttttgacttcaagttcccta
attgatcaaactgatcaaaaagatcaaaatccacgagggcccctatgcct
ctataccccctatgtctcaatANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgcttagttcaatttgcttctttttgactt
caagttccctaattgatcaaactgatcaaaaagatcaaaatccacgaggg
cccctatgcccctataccccccccatgtctcaaatagactatgggcttag
ttcaatttgcccCCTTTGCCCCTATCCTATACATTCTATGTCTCAaatag
actatgggcttagttcaatttgcttctttttgacttcaagttccctaatt
gataaaactgatcaaaaagatcaaaatccacgagggcccctatgcctcTA
TAcccccctttgtctcaaatagactatgggcttagttcaatttgcttctt
tttgacttcaagttccctaattgatcaaactgatcaa

Coding sequence (CDS) from alignment at sc0002000:6..9942+

>TCONS_00039047 ID=TCONS_00039047|Name=TCONS_00039047|organism=Clytia hemisphaerica|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0002000:6..9942+ (Clytia hemisphaerica)
TTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACGA
CGCGGAAGAAGgatCAGAATCTAACGACGACgaagaaagagaaagagaag
CAGGAACAGATATGTTGATTGATGACACGAGCATGAAAATTGCAATTCAG
ATCATCAGAATATCTCTCAATCAATTATGTATCATTGGGACAGGCACAAC
GCTGGAAAAGGTCGTTATTCCGGATGAAGACGACTCTGGGATCGACTTCG
ATTTGGTCAGAAGAGTCGTCAACATATCCGGAGACATGGTGTCGTTCACT
AAACTGGTGTCCGAAAAATTTGGCAATGCGTATGTTGTTAAGCAGAAGAA
GAAAAACGCAAAGTTTACCGTCGGCACTTTGGTGACGGCAATATTTTCCT
ATCTGGAAAACAAGAAAATCTGCAAGATCGTGCAATTAAGATGTAATAAA
GGCACCGGCAACAACAAGTTGGCAATCTTTCTGGAAAAATCTTCCCCAGA
GAACATGCCACAAGAGCTGAAAAACAATCTTGTTAAAATCGGCATGTCGT
CTAAAGAATACGCCACAGTCTTCAACGATATGGAGGACGAAAATGGGAAA
GCCCATAGAGAACAGTTTCTATCGAAACAAAAATGGCAGAGGGTAGAAGA
TGGTCAGACACCACAGAAGCGGCGAAGGCTTGAGTTTGATGATGCTGATG
GTGATGATGTTGGAAATTAATTTCTAGATGCGGCACTGGAGGAAAGGGCT
ACAACACCTGAGAAAGACGACGCGGAAGAAGgatCAGAATCTAACGACGA
CgaagaaagagaaagagaagCAGGAACAGATATGTTGATTGATGACACGA
GCATGAAAATTGCAATTCAGATCATCAGAATATCTCTCAATCAATTATGT
ATCATTGGGACAGGCACAACGCTGGAAAAGGTCGTTATTCCGGATGAAGA
CGACTCTGGGATCGACTTCGATTTGGTCAGAAGAGTCGTCAACATATCCG
GAGACATGGTGTCGTTCACTAAACTGGTGTCCGAAAAATTTGGCAATGCG
TATGTTGTTAAGCAGAAGAAGAAAAACGCAAAGTTTACCGTCGGCACTTT
GGTGACGGCAATATTTTCCTATCTGGAAAACAAGAAAATCTGCAAGATCG
TGCAATTAAGATGTAATAAAGGCACCGGCAACAACAAGTTGGCAATCTTT
CTGGAAAAATCTTCCCCAGAGAACATGCCACAAGAGCTGAAAAACAATCT
TGTTAAAATCGGCATGTCGTCTAAAGAATACGCCACAGTCTTCAACGATA
TGGAGGACGAAAATGGGAAAGCCCATAGAGAACAGTTTCTATCGAAACAA
AAATGGCAGAGGGTAGAAGATGGTCAGACACCACAGAAGCGGCGAAGGCT
TGAGTTTGATGATGCTGATGGTGATGATGTTGGAAATTAATTTCTAGATG
CGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACGACGCGGAAGAA
GgatCAGAATCTAACGACGACgaagaaagagaaagagaagCAGGAACAGA
TATGTTGATTGATGACACGAGCATGAAAATTGCAATTCAGATCATCAGAA
TATCTCTCAATCAATTATGTATCATTGGGACAGGCACAACGCTGGAAAAG
GTCGTTATTCCGGATGAAGACGACTCTGGGATCGACTTCGATTTGGTCAG
AAGAGTCGTCAACATATCCGGAGACATGGTGTCGTTCACTAAACTGGTGT
CCGAAAAATTTGGCAATGCGTATGTTGTTAAGCAGAAGAAGAAAAACGCA
AAGTTTACCGTCGGCACTTTGGTGACGGCAATATTTTCCTATCTGGAAAA
CAAGAAAATCTGCAAGATCGTGCAATTAAGATGTAATAAAGGCACCGGCA
ACAACAAGTTGGCAATCTTTCTGGAAAAATCTTCCCCAGAGAACATGCCA
CAAGAGCTGAAAAACAATCTTGTTAAAATCGGCATGTCGTCTAAAGAATA
CGCCACAGTCTTCAACGATATGGAGGACGAAAATGGGAAAGCCCATAGAG
AACAGTTTCTATCGAAACAAAAATGGCAGAGGGTAGAAGATGGTCAGACA
CCACAGAAGCGGCGAAGGCTTGAGTTTGATGATGCTGATGGTGATGATGT
TGGAAATTAATTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACCTG
AGAAAGACGACGCGGAAGAAGgatCAGAATCTAACGACGACgaagaaaga
gaaagagaagCAGGAACAGATATGTTGATTGATGACACGAGCATGAAAAT
TGCAATTCAGATCATCAGAATATCTCTCAATCAATTATGTATCATTGGGA
CAGGCACAACGCTGGAAAAGGTCGTTATTCCGGATGAAGACGACTCTGGG
ATCGACTTCGATTTGGTCAGAAGAGTCGTCAACATATCCGGAGACATGGT
GTCGTTCACTAAACTGGTGTCCGAAAAATTTGGCAATGCGTATGTTGTTA
AGCAGAAGAAGAAAAACGCAAAGTTTACCGTCGGCACTTTGGTGACGGCA
ATATTTTCCTATCTGGAAAACAAGAAAATCTGCAAGATCGTGCAATTAAG
ATGTAATAAAGGCACCGGCAACAACAAGTTGGCAATCTTTCTGGAAAAAT
CTTCCCCAGAGAACATGCCACAAGAGCTGAAAAACAATCTTGTTAAAATC
GGCATGTCGTCTAAAGAATACGCCACAGTCTTCAACGATATGGAGGACGA
AAATGGGAAAGCCCATAGAGAACAGTTTCTATCGAAACAAAAATGGCAGA
GGGTAGAAGATGGTCAGACACCACAGAAGCGGCGAAGGCTTGAGTTTGAT
GATGCTGATGGTGATGATGTTGGAAATTAATTTCTAGATGCGGCACTGGA
GGAAAGGGCTACAACACCTGAGAAAGACGACGCGGAAGAAGgatCAGAAT
CTAACGACGACgaagaaagagaaagagaagCAGGAACAGATATGTTGATT
GATGACACGAGCATGAAAATTGCAATTCAGATCATCAGAATATCTCTCAA
TCAATTATGTATCATTGGGACAGGCACAACGCTGGAAAAGGTCGTTATTC
CGGATGAAGACGACTCTGGGATCGACTTCGATTTGGTCAGAAGAGTCGTC
AACATATCCGGAGACATGGTGTCGTTCACTAAACTGGTGTCCGAAAAATT
TGGCAATGCGTATGTTGTTAAGCAGAAGAAGAAAAACGCAAAGTTTACCG
TCGGCACTTTGGTGACGGCAATATTTTCCTATCTGGAAAACAAGAAAATC
TGCAAGATCGTGCAATTAAGATGTAATAAAGGCACCGGCAACAACAAGTT
GGCAATCTTTCTGGAAAAATCTTCCCCAGAGAACATGCCACAAGAGCTGA
AAAACAATCTTGTTAAAATCGGCATGTCGTCTAAAGAATACGCCACAGTC
TTCAACGATATGGAGGACGAAAATGGGAAAGCCCATAGAGAACAGTTTCT
ATCGAAACAAAAATGGCAGAGGGTAGAAGATGGTCAGACACCACAGAAGC
GGCGAAGGCTTGAGTTTGATGATGCTGATGGTGATGATGTTGGAAATTAA
TTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACGA
CGCGGAAGAAGgatCAGAATCTAACGACGACgaagaaagagaaagagaag
CAGGAACAGATATGTTGATTGATGACACGAGCATGAAAATTGCAATTCAG
ATCATCAGAATATCTCTCAATCAATTATGTATCATTGGGACAGGCACAAC
GCTGGAAAAGGTCGTTATTCCGGATGAAGACGACTCTGGGATCGACTTCG
ATTTGGTCAGAAGAGTCGTCAACATATCCGGAGACATGGTGTCGTTCACT
AAACTGGTGTCCGAAAAATTTGGCAATGCGTATGTTGTTAAGCAGAAGAA
GAAAAACGCAAAGTTTACCGTCGGCACTTTGGTGACGGCAATATTTTCCT
ATCTGGAAAACAAGAAAATCTGCAAGATCGTGCAATTAAGATGTAATAAA
GGCACCGGCAACAACAAGTTGGCAATCTTTCTGGAAAAATCTTCCCCAGA
GAACATGCCACAAGAGCTGAAAAACAATCTTGTTAAAATCGGCATGTCGT
CTAAAGAATACGCCACAGTCTTCAACGATATGGAGGACGAAAATGGGAAA
GCCCATAGAGAACAGTTTCTATCGAAACAAAAATGGCAGAGGGTAGAAGA
TGGTCAGACACCACAGAAGCGGCGAAGGCTTGAGTTTGATGATGCTGATG
GTGATGATGTTGGAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023499XLOC_023499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039047-proteinTCONS_00039047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039047-exon-sc0002000-1491911889:6..66TCONS_00039047-exon-sc0002000-1491911889:6..66Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1510915933:6..66TCONS_00039047-exon-sc0002000-1510915933:6..66Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1575043694:6..66TCONS_00039047-exon-sc0002000-1575043694:6..66Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1491911889:2753..2800TCONS_00039047-exon-sc0002000-1491911889:2753..2800Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1510915933:2753..2800TCONS_00039047-exon-sc0002000-1510915933:2753..2800Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1575043694:2753..2800TCONS_00039047-exon-sc0002000-1575043694:2753..2800Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1491911889:3011..3079TCONS_00039047-exon-sc0002000-1491911889:3011..3079Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1510915933:3011..3079TCONS_00039047-exon-sc0002000-1510915933:3011..3079Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1575043694:3011..3079TCONS_00039047-exon-sc0002000-1575043694:3011..3079Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1491911889:5188..5480TCONS_00039047-exon-sc0002000-1491911889:5188..5480Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1510915933:5188..5480TCONS_00039047-exon-sc0002000-1510915933:5188..5480Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1575043694:5188..5480TCONS_00039047-exon-sc0002000-1575043694:5188..5480Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1491911889:6929..7053TCONS_00039047-exon-sc0002000-1491911889:6929..7053Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1510915933:6929..7053TCONS_00039047-exon-sc0002000-1510915933:6929..7053Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1575043694:6929..7053TCONS_00039047-exon-sc0002000-1575043694:6929..7053Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1491911889:8119..9942TCONS_00039047-exon-sc0002000-1491911889:8119..9942Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1510915933:8119..9942TCONS_00039047-exon-sc0002000-1510915933:8119..9942Clytia hemisphaericaexon
TCONS_00039047-exon-sc0002000-1575043694:8119..9942TCONS_00039047-exon-sc0002000-1575043694:8119..9942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002000supercontigsc0002000:6..9942 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.987444	0.862884	0.421648	0.232813	29.5155	22.8577	30.14	31.4755	27.7295	31.0651	38.3266	23.4856	17.3166	19.364	9.5994	10.854	10.0643	10.8163	11.4714	13.3964	11.7555	11.9338	6.04819	6.19294	22.9695	30.6239	13.2122	12.8961	7.1104	6.41891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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