XLOC_023499 (gene) - C. hemisphaerica

Overview
NameXLOC_023499
Unique NameXLOC_023499
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002000:6..9942+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023499 ID=XLOC_023499|Name=XLOC_023499|organism=Clytia hemisphaerica|type=gene|length=9937bp|location=Sequence derived from alignment at sc0002000:6..9942+ (Clytia hemisphaerica)
TTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACCTGAGAAAGACGA
CGCGGAAGAAGGTATGTAGTAAATAAATAGTAATCTTACAGGCTTGTTGG
CTTGTTTTTAATCGCGATAATTATGATTTATAACACATCCaacttttgga
cctaccttgaggTTCTATATTGGGCAGAGATAGGCAATTTTTTTCACCGT
CGAAAATGTaagatttaagaaaaataatgccaagtttttagttttgttca
aaatgtcattttttcatcATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNACCTTCCTTTAAATAAGAagaggtcatttagaca
gctaattatcatttttaatgactgaaacgaaaatactgatgtatcatgta
attatgcttctgtttagtttgatttaacttttttgtggcgcacccggtat
aagaTAAAAATCCCtatagaattaaaaaaagcggcgatttccggcatatt
ccaAGCATCTTcgaccggaaaattttttttatctaaaatcgGATACTGTC
ATAcattgggcattgctaatacatctttgtgctaaaaatcagaaaaaaat
aatgagccaatctctagaaagcttaatttccttgtaaatggttaaaggga
atttccccaaaatatgaaaatccgttttttaaggcgaataagaattttcc
gggaaaaaccacttcagccattctttagagaaccttgccctccatctttg
tacaaaaaatcagtaaaaagtaatgacagaattttgcacaaagtccaaaa
aaccctattttaggtagtttttggcccaaatttgccccaaaaaatatttt
ctcaaaaatccggctccgtcacattttggacattgccgttttgcatcatt
gtgccaaaaatcagaaagaaataatGAGCGAATCTctagaaaagctggca
acagacaaactaactaacgaacgaacgaacgaacgaacgaacgaacgaac
atcagttaatttataggacctccgtggtaggtccaaaaattgtaCTATAT
ATGAACTTGTGTCATAAAAATGCATACGTTTACTAGGTctgtagatttag
aacgccatgggtAATCCCTTAGAACATAATCCTAAATTCACACCGATAAA
AAAGAGGCTCACATTTCTACAACTggatatttttcttcaaaatcttcCCC
CGaccgattttcattttttttcagactCAGGCTCAGGGCACTGAGGCAGG
GGtgtgttttttacacaaaagtAAGATaccatgatttttttcttcaggat
CAGAATCTAACGACGACgaagaaagagaaagagaagCAGGAACAGGTATG
GGTAAAACACCTGTGTATCATAGACGATAAAAGCCCTACTTGAAAAAAAT
ACGCCAAAAAGTTGTTCTAGTGCGTAGTGGAAAAGATGAGATTTTGCTAT
CCCAAATTTCCATGTATGTATTTTCTATCTATATCCCTTTTGGGTAAGGA
AAACGAAACGTTGTTTTGAAAGTACAAGGAGAGAATATAAATTTGTTTCT
TCTAGATATGTTGATTGATGACACGAGCATGAAAATTGCAATTCAGATCA
TCAGAATATCTCTCAATCAATTATGTAAGTATGTACTGTTTATTTGTCAT
CTGAGTGACAAAACCTTCATACCAACTTTTCCGTGACCGTGCCTGGCCAT
GGAAAACTGATTTCATATTTCATGAAATCCTGAAGAATCTCGAAATAAAT
TTTCtactttcaaaaattattttaagctAGGATATTGAGAATCAACAATT
AACATCAAAGTTTCTCTAGCCAAAACAATAGTTCGTAGTATCGTAGCATT
ACAACTGATGCTAGGTCAAGCCATAAATCCAGTAAATAAATAATAAGGTA
TTATAAAACAAAGTAAGAAAAAAAGACAGTTTCGCttgtttttctacttt
tttcttttccttccgACAGACAAATGAACCACccgtagaaaaagaaaaaa
cattcgaatcgccataaatttatttgacatTTAATAATTTCTGGGAAGAA
AAGTCATATCTCCTGAAAATAGGTGatcatcaaaacattcgaaagcgttT
TGGAACTATAACAAATTTGTCAACAAGTATTGTCCGAGCTTGCGAGGGCA
ATATTTGATAGAGGTCAATATTTACGGTATTGCCCTCAAAAGCAAGCGCG
cagtgatttttcaaaatattcacacTTTTCGCAAACcaccataacttttg
aacaaaaCAACTTTAGAAGAAAGGTTATATATCTTTGGCCGAAAGTAAAA
GACATCTACTTTCTATCTTTTGAGCCATATCATGATTCTTTGACTGTATT
TTAGTAAAACTTTCACAAGGTTCAACCCTACATTATATGACAGCGAATAA
AAGTCCCATCTGGGTAGAcccaaatttcaaagtcataTTGAATGATGAAA
GAGTTAACTCTCAAAACAACTATTTCACCACCTCCATCTTGAATTTGAAT
GTTTTTCAACTGTTTGTTTTGATCGCACACTTGACCCTAAccctttaaaa
tcaatttttttaaatatcctaAACATTTGATCCTCAAAATAACACAGAAC
TAAATATCATAGCTGAAAACAGAATACATGCTAAAAACGCATATGTGCGT
CCTTCGTATATAGACGCGGACGCTCACGTGTGTCCTTCGTGGGCAAAGGG
TCTAATTCAAAACAACATTCAACTTTCCAATGTATTGAAATGGTACTCCT
GAGTTGGTCGAATTTTataaaagcattgatgatattttttctaaactcTT
TGTAGCACAGAATTTGAAATATGGCTACTTCGTTAATACGTGAAACTGCA
CTAAactttacttacttacttatcaGCACACCTCTGGTTGAGGCTTCGCC
CACTTGTGTACTTTCTCTCGCCATCTGGTTCTGTCACGTGCGTATCGTTC
TGCCGTTGCTAAGGGAAGACCTGTGTCTTCCCTGATTTTATCTTGCCATC
TTTTTCCAGGTCTACCTCTTCTTTGTGTGCCTTGgaattcatttttcaaa
catattttggCTAGACTTTCCTCGGGCAGTCTTGCTACATGCCCAAACCA
AGACACGCGTCTCTTTTTTTATCATATAGACAATTGGCATTTTGAGTTTT
GCTCTCTTACGTAGCCGTTTGAGTGATATCCGGTCTTCGAGTCTAATCCC
CAGTAGAATGGAGCGAATacaattgttttcgaaaactgaGAGCTTGTTTT
CATCAAGCTTTCTTAGAGACCTGGTTTCCGCGCCGTATATTGCGATTGGG
AGAATGAGAGCTTTGTACAGTCGAATTTTAAAAGCATTTGAGACATCTCT
CCTTAATCAGATCTTCTGTTTTAGTTTTCCAAAGGCAATATTTGCAAGTG
CAATTCGTCTTTTGACGTCCGTGGAGGTACTAGGAACATTTGatccaagg
aaaatgaagtctTGAACAGTGTCAACATTTTTATTGTCAATTACAACTGG
CTGAGGGCTGGGTGTTATGGCTTTGCATTTTGTAGCATTGATTTTCATGC
CATACTTCAAACAGGCGTCCTGTAGTTGATTCGTGGAGAGTTGAAGTTTC
TCAAAGACAGCTGACAACTATTGTTCTCGATTTTATAGAGTCGAGATTCG
CCGTCATAACCGTCACTGTGATCCTCGGCATCCCTTTCAAATCAACAAAA
TAAGTTTAGATTGCATTGATTAATTTATCCAGGTATCATTGGGACAGGCA
CAACGCTGGAAAAGGTCGTTATTCCGGATGAAGACGACTCTGGGATCGAC
TTCGATTTGGTCAGAAGAGTCGTCAACATATCCGGAGACATGGTGTCGTT
CACTAAACTGGTGTCCGAAAAATTTGGCAATGCGTATGTTGTTAAGCAGA
AGAAGAAAAACGCAAAGTTTACCGTCGGCACTTTGGTGACGGCAATATTT
TCCTATCTGGAAAACAAGAAAATCTGCAAGATCGTGCAATTAAGATGTAA
TAAAGGCACCGGCAACAACAAGTTGGTAAGAATAATTTTGGATCGACGAA
ATTTTAAAGGGATTACCcgataattttgaaaactcgGTCATCTCTGCCTT
ATCATCGATacatttttatgatattttcttGTTCATTAATTATGGCCCAa
aacgtcagcaaaattttacgtcaAAGTGAGACAAAAAGTCCCACGAAAGT
TCCAATTGTCAAATTGTAACGTCAATTAGGCTAAAAACCTTTGAACACAA
TGGAGACTACAGTTTATATTTCAGTGAAATAGAGCTCCTAACTTTTTAAC
GAATATTTCAACGTATAGCATAAGcaaattttttgcttaaattacTTCAC
TCTATAACATATGTTTTACATAAACTATCGCTCAACCAACGAGCACAAGG
Aaggttttttacgtttttttaaaacagcatgaactttttccatataatta
tCGTTATTTTTGTGCTTAAACTTTCTCGTGAGAAATTGTTAACTAATTTT
ATgtgtttcacggaatttaatttcgcggttgacactcaaaaccgtgaaat
taaattccacgaaaaCTTCTTCCCTTAAGATATGGAATCAGTTTTTTTAT
GACACAGCCAAGAAAAAGTTGGCATGAAGTTATACAATTCTTTAATTGGA
TTGACTGAAAAGGTCCTTACTGCAGAAACATTTTAATAATttcaaaggaa
acaaaaaaaactttaacagGGTAGCTCTTAGCTGAATACATCAATCTCCC
gtttagtgtggtcgtgttacaaaaatacaggctgtttgtaggaaaaaaat
aagatctagctgaaaccttctccagaccttctctataggatgcttatacc
tcaggaaaaatttccctaaaatcccactggtggaacatcccttttttggg
acatttctattttccccaggcaaaatcctaagggcgagattttttgaaca
tttcaaacttatttccagacaatatcattTATACcgttcgaaagctctcg
aaaaactatatataagacttttaaacggttatagcaGATTTCcctaccta
actcgagatatttcatgcgcaatttccacttttcgccacactttggtcaa
aattgaccataaagaGCATCTTCTgtgtgaattatcttgagttaggtaat
gaaatcggctatacccgtttaaaagtcttctatatagtttttcaacagct
ttcgaatggtatacttgaaaatgtctgaaaatgagtttgaaattttcaaa
aaatttcgcccttagggttttgcctggggaaaaaagaaatgtcccaaaaa
gggatgttccaccagtgggattttaggggaatttttcctgaggtataacc
atcctatagagaaggtctggagaaagtttcagctagatcatattgttttc
ccgtaaattatgaTTAACGACCCCACTAGTTCCCAAATTTCTGCTTTAAC
AAATGTAAATGTTACTATTACAGGCAATCTTTCTGGAAAAATCTTCCCCA
GAGAACATGCCACAAGAGCTGAAAAACAATCTTGTTAAAATCGGCATGTC
GTCTAAAGAATACGCCACAGTCTTCAACGATATGGAGGACGAAAATGGGT
ataatgttttatttatttatttatgttttACTTTTTCCATATTTGGAAGT
TTTCTCTAAAATTCTCCTGTACCTCATGTTTCTATGTCCTGCTTACTTTC
AAACAACCAAAAGCCACATTATTTAATAGATCATTAGACGCTTTAATAGA
ATTTGTGCATCGGTTACATGCCATTTTCTTTTCAATGGAATtctgaacaa
tttttttctacaagcaaattttttttgtaatcagTTAAACACACTtgcaa
tttcaaaacattttgcccccccccctcctccTTTGAAAGTTTTTGGGGAA
ACCCCGCCCAACTAACTCTCTCAGACTCGTTTTTGACCAGTGATAGGCAT
TGATGATATTATATGATTTGCAAAATTTCTAGTTTGTTCGGTCAAGTGTC
AAACCGGTCCGTGTTTTACATATAATACTCACTTTCTAGATAACAGGTGG
TTAGAATGACCTGAAATTTTGATAGGAGTCCTACTTTATCATTACTTTAT
CTTATCATGCTAAAAATTTCAACTCAATACCATTTTCATATCCGGAGATG
TCCAAATATAGGGTCATGTGGGCAAAAATGGGTAATTTCGTCCGGACACG
TGACAGTTGGCAAACAATTACCCAACGCCCCGAAACCTTTTGTCAGTGGG
AGCTGACAGACAAAATATTGAAGTGAGAGAAAGTTAGAAGGAGGTCTATT
TTAGGCATAAAAATTATGCCTATCATTGATCCTGAAAGTTTGTCACAAGA
TGTCAATTTATATTTGATGCACACTTGCTAAATTTTATGgcgaaaattct
ttcaaaagttatcgaAACTTTTCGTTTAAGGGGGAGGCTATGTAGGACCC
CAACAAGAAGGAAAATAAGTATTTAGTATAAATGCCGAGAAGAAAGCTAT
TGGAAACGTTTCCTTCTTCTCATCTCTATTATAATGGATGGAAAACCTTT
TTCTGTTACGATCGATTTTGACTACACTGCCAATACAGGATTGCAAGGAG
GCTAAAGGCAATCAATCTTATACCTTTTaataatgattttaattttactt
tctgTTACATTAGGAAAGCCCATAGAGAACAGTTTCTATCGAAACAAAAA
TGGCAGAGGGTAGAAGATGGTCAGACACCACAGAAGCGGCGAAGGCTTGA
GTTTGATGATGCTGATGGTGATGATGTTGGAAATTAAAAGTAATTTGGAC
AGTCAGGACAgtcttttgttttttagtttcttgttttttttctgattttg
gtattgtataattaaaaaaaaaactaaaaaaaactttaacttCCAGATCT
GCGGATCTGCGATAATAAAAATGATATACGGTCACTTTTACGTACGAAAC
TTACTAAATATAACCATGATATTTTTTGTCGAATCAATTTTGAGCAGTTG
ATTCAAATGGGGAGAAATCCCCGAACAAATAAGTTTTTTCTTGTTTATGG
TGTTAGCCCGAAACCATTATTCATAACTTTATATATAACTATGCATACTA
GTAGTTTGTAATGTAACTTATTTTCTTATTGTTTTGTAAAAAAGATTCAC
ATGTCAGataaaatcaatcaaacgtaTCAAATCTTAAGAAATTCTTCTGT
TTTGGCTTCGTTGACAGTCCAGGATGATCagggtcaaaatgcttgcatCG
TTACAGATGATTGTTAAGAGCTCGTTTTGGTCTTAAAGAAGCATATCAAT
TCATAGAAAATTATACGCCAAGTCCCCttattgatcaaactgatcaaaaa
gatcaaaatccacgagggcccctatgcccctatacccactatgtctcaaa
tggactatgggctttgttcaatttgtgtctttttgacgtcaagttcccta
attgatcaaactgatcgaaaagatcaaaatccacgagggcccctatgccc
ctatacccccctatgtctcaaatagactatgggcttagttcaatttgctt
ctttttgcccCTATCCTATACATTCTATGTCTCAAATAGACTATGGGCTT
aattcaatttgcttctttttgacttcaagttccctaattgatcaaactga
tcaaaaagatcaaaatccacgaggacccctatgcccctataccgcctatg
tctcaaatggactatgggcttagttcaatttgcttctttttgacttcaag
ttccctaattgatcaaactgatcaaaaagatcaaaatccacgagggcccc
tatgcccctatacccccctatgtctcaaatagacTGTGGGCTtggttcaa
tttgcttctttttgacttcaagttccctaattgatcaaactgatcaaaaa
gatcaaaatccacgaggacccctatgcccctataccgcctatgtctcaaa
tggactatgggcttagttcaatttgcttctttttgacttcaagttcccta
attgatcaaactgatcaaaaagatcaaaatccacgagggcccctatgcct
ctataccccctatgtctcaatANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgcttagttcaatttgcttctttttgactt
caagttccctaattgatcaaactgatcaaaaagatcaaaatccacgaggg
cccctatgcccctataccccccccatgtctcaaatagactatgggcttag
ttcaatttgcccCCTTTGCCCCTATCCTATACATTCTATGTCTCAaatag
actatgggcttagttcaatttgcttctttttgacttcaagttccctaatt
gataaaactgatcaaaaagatcaaaatccacgagggcccctatgcctcTA
TAcccccctttgtctcaaatagactatgggcttagttcaatttgcttctt
tttgacttcaagttccctaattgatcaaactgatcaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039047TCONS_00039047Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039047-proteinTCONS_00039047-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002000supercontigsc0002000:6..9942 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.99	0.86	0.42	0.23	29.52	22.86	30.14	31.48	27.73	31.07	38.33	23.49	17.32	19.36	9.6	10.85	10.06	10.82	11.47	13.4	11.76	11.93	6.05	6.19	22.97	30.62	13.21	12.9	7.11	6.42