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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039023 ID=TCONS_00039023|Name=TCONS_00039023|organism=Clytia hemisphaerica|type=transcript|length=437bp
aataaatcaaaatcgaaagtgaaagtgttgGAATGTACCAGGATTTTCTT
GTCTGATCTGCTGATTGTGTATATAGAAGCCCAATCCTGTTAAATGATGT
TTTCCAGAtatcattttgtatcaaaaacATTTGTAACAAATTCTAAATAT
ATCAAACATGCAAATATATTCAAGCAGAATATTTCATCCAAAgAAAGTAA
GCCATGTGTCATAGTTGAGCGTCTCGATTCTCTCAATGTAATGACCATTG
GAATCAACCGTCCACAGAAACGAAATTGTGTTAACATTGAGACAGCTGGG
CTATTAATCAGTGCAtttaaagaatttgaaaaagatgATCAAATTCACTG
TGCTGTTTTGCATGGCTTTGGAGGATTCTTTTGTGGTGGGTATGATTTAG
AAGAACTATCAGAGATCCCAGAAAAAGATAGGCAAAA Run BLAST on NCBI protein sequence of TCONS_00039023-protein >TCONS_00039023-protein ID=TCONS_00039023-protein|Name=TCONS_00039023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MMFSRYHFVSKTFVTNSKYIKHANIFKQNISSKESKPCVIVERLDSLNVM
TIGINRPQKRNCVNIETAGLLISAFKEFEKDDQIHCAVLHGFGGFFCGGY
DLEELSEIPEKDRQ Run BLAST on NCBI transcript from alignment at sc0001996:8393..9438+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039023 ID=TCONS_00039023|Name=TCONS_00039023|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at sc0001996:8393..9438+ (Clytia hemisphaerica)
aataaatcaaaatcgaaagtgaaagtgttgGAATGTACCAGGATTTTCTT
GTCTGATCTGCTGATTGTGTATATAGAAGCCCAATCCTGTTAAATGATGT
TTTCCAGAtatcattttgtatcaaaaacATTTGTAACAAATTCTAAATAT
ATCAAACATGCAAATATATTCAAGCAGAATATTTCATCCAAAggtaaaaa
gttcattttttataaaatttgatgcCAGTGCCAGATGCCAGAATTTTATC
TTGGACTTGCAAGCATTCCCTTGTTATATTTTCTTCTCTCATGTTaaata
atatttcaatattttttcttgacaTTGTTattgtaagttggtctaatatc
aacatccctTTATCTAATTCTCTTTTGAGGAATAACATGAAAGTTTGAAT
CGCTAGCTATAAattgaaaaaggatttttctttctgaccattaaagcaaa
gaaaaagagCTTCGACCTTTAATCTATTTTCagctctaaaaaagggtgtc
agaattagataagaaatgtcgacattagaccaagttacggtacttGCTGA
ATCAGTGATGGACAAAAAGGAATGATTTTTTGATTCTCATCTTAAAATTA
GATGGGGTTGGTACTGCACTAACTAATGcattttcacaaaattatcaaat
ttcaCTAGTATTATTTTTCCTGAATTCTCTAAAAGTTAATAAACATTCAC
CACCCAATCAGAGAGAACAAAGGACAGTTTGTCAACTCAGTTTTATTGGT
TAACATTTTGTTAgtgctttttgtttttcaattacATTGTATTCCTCCTT
AGAAAGTAAGCCATGTGTCATAGTTGAGCGTCTCGATTCTCTCAATGTAA
TGACCATTGGAATCAACCGTCCACAGAAACGAAATTGTGTTAACATTGAG
ACAGCTGGGCTATTAATCAGTGCAtttaaagaatttgaaaaagatgATCA
AATTCACTGTGCTGTTTTGCATGGCTTTGGAGGATTCTTTTGTGGTGGGT
ATGATTTAGAAGAACTATCAGAGATCCCAGAAAAAGATAGGCAAAA Coding sequence (CDS) from alignment at sc0001996:8393..9438+ >TCONS_00039023 ID=TCONS_00039023|Name=TCONS_00039023|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0001996:8393..9438+ (Clytia hemisphaerica)
ATGATGTTTTCCAGAtatcattttgtatcaaaaacATTTGTAACAAATTC
TAAATATATCAAACATGCAAATATATTCAAGCAGAATATTTCATCCAAAg
AAAGTAAGCCATGTGTCATAGTTGAGCGTCTCGATTCTCTCAATGTAATG
ACCATTGGAATCAACCGTCCACAGAAACGAAATTGTGTTAACATTGAGAC
AGCTGGGCTATTAATCAGTGCAtttaaagaatttgaaaaagatgATCAAA
TTCACTGTGCTGTTTTGCATGGCTTTGGAGGATTCTTTTGTGGTGGGTAT
GATTTAGAAGAACTATCAGAGATCCCAGAAAAAGATAGGCAAATGATGTT
TTCCAGAtatcattttgtatcaaaaacATTTGTAACAAATTCTAAATATA
TCAAACATGCAAATATATTCAAGCAGAATATTTCATCCAAAgAAAGTAAG
CCATGTGTCATAGTTGAGCGTCTCGATTCTCTCAATGTAATGACCATTGG
AATCAACCGTCCACAGAAACGAAATTGTGTTAACATTGAGACAGCTGGGC
TATTAATCAGTGCAtttaaagaatttgaaaaagatgATCAAATTCACTGT
GCTGTTTTGCATGGCTTTGGAGGATTCTTTTGTGGTGGGTATGATTTAGA
AGAACTATCAGAGATCCCAGAAAAAGATAGGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039023-exon-sc0001996-1491911889:8393..8585 | TCONS_00039023-exon-sc0001996-1491911889:8393..8585 | Clytia hemisphaerica | exon |
| TCONS_00039023-exon-sc0001996-1510915933:8393..8585 | TCONS_00039023-exon-sc0001996-1510915933:8393..8585 | Clytia hemisphaerica | exon |
| TCONS_00039023-exon-sc0001996-1575043694:8393..8585 | TCONS_00039023-exon-sc0001996-1575043694:8393..8585 | Clytia hemisphaerica | exon |
| TCONS_00039023-exon-sc0001996-1491911889:9195..9438 | TCONS_00039023-exon-sc0001996-1491911889:9195..9438 | Clytia hemisphaerica | exon |
| TCONS_00039023-exon-sc0001996-1510915933:9195..9438 | TCONS_00039023-exon-sc0001996-1510915933:9195..9438 | Clytia hemisphaerica | exon |
| TCONS_00039023-exon-sc0001996-1575043694:9195..9438 | TCONS_00039023-exon-sc0001996-1575043694:9195..9438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001996 | supercontig | sc0001996:8393..9438 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001753 | Crotonase_core_superfam |
| IPR029045 | ClpP/crotonase-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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