TCONS_00039018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039018
Unique NameTCONS_00039018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039018 ID=TCONS_00039018|Name=TCONS_00039018|organism=Clytia hemisphaerica|type=transcript|length=302bp
GCTTCTTACATGCTTCTAAAGTAGAAATATCATCTTGATCAGGTGGATCT
ACTCTTACAGTACTGTAACAGGAAATTTAATGAGGTCAAGGGAAAGGGGG
CTATGACGAGCAGTatgttatatcaaattttataaacTCTGGAACCTAGT
AATGTTTAATCAACATGGTTTAAGTAGAGGTTATTCTTTCAGTATTTACG
CAAGTGGGAAAGCCTCTCGGGAGTTTTTGAGGCTAGAACCTAGCTTTAAA
GAAAGGGCCAAGTACAACCGTGGTTTGCACTGacgagaaatttttgattt
tc
Run BLAST on NCBI

transcript from alignment at sc0001993:29331..29632

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039018 ID=TCONS_00039018|Name=TCONS_00039018|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at sc0001993:29331..29632 (Clytia hemisphaerica)
gaaaatcaaaaatttctcgtCAGTGCAAACCACGGTTGTACTTGGCCCTT
TCTTTAAAGCTAGGTTCTAGCCTCAAAAACTCCCGAGAGGCTTTCCCACT
TGCGTAAATACTGAAAGAATAACCTCTACTTAAACCATGTTGATTAAACA
TTACTAGGTTCCAGAgtttataaaatttgatataacatACTGCTCGTCAT
AGCCCCCTTTCCCTTGACCTCATTAAATTTCCTGTTACAGTACTGTAAGA
GTAGATCCACCTGATCAAGATGATATTTCTACTTTAGAAGCATGTAAGAA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023470XLOC_023470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039018-exon-sc0001993-1491911889:29331..29632TCONS_00039018-exon-sc0001993-1491911889:29331..29632Clytia hemisphaericaexon
TCONS_00039018-exon-sc0001993-1510915933:29331..29632TCONS_00039018-exon-sc0001993-1510915933:29331..29632Clytia hemisphaericaexon
TCONS_00039018-exon-sc0001993-1575043694:29331..29632TCONS_00039018-exon-sc0001993-1575043694:29331..29632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001993supercontigsc0001993:29331..29632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.371592	0	0	0	0.406073	0.979821	0.458648	0	0.397747	0	0	0.506859	0	1.51464	0.232206	1.14424	1.1728	0	1.69552	0.368429	0	0.873827	0.397218	1.22738	0.365134	0.522506	0	2.53767	3.0164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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