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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039007 ID=TCONS_00039007|Name=TCONS_00039007|organism=Clytia hemisphaerica|type=transcript|length=310bp
NGGCAGTTGAGGAAGAAGTTCAAAgtgattcttcttcttcttatgTTGCT
GAAGAAATACAGGCTGATTGCCAAGAACTTATTTCAGATTATGATTCTAT
AGACAATAATGCTCAAAGTGAAGATAATACTACCTTCAGTTGTGAACCAG
AAGATCATctggatgatgatgatgatgatgatgatgatgatgatgatgat
gacgataTCAATGTCGATAATGGGATGGAAATAGAAGGCGATGGTGCAGA
AGAAAATGGTGCAGAAGGAAATGGTTATCGTAGtgTTATCATGGAGAATT
TGCTTCAAAC Run BLAST on NCBI protein sequence of TCONS_00039007-protein >TCONS_00039007-protein ID=TCONS_00039007-protein|Name=TCONS_00039007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
AVEEEVQSDSSSSYVAEEIQADCQELISDYDSIDNNAQSEDNTTFSCEPE
DHLDDDDDDDDDDDDDDDINVDNGMEIEGDGAEENGAEGNGYRSVIMENL
LQ Run BLAST on NCBI transcript from alignment at sc0001990:29971..33226+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039007 ID=TCONS_00039007|Name=TCONS_00039007|organism=Clytia hemisphaerica|type=transcript|length=3256bp|location=Sequence derived from alignment at sc0001990:29971..33226+ (Clytia hemisphaerica)
NGGCAGTTGAGGAAGAAGTTCAAAgtgattcttcttcttcttatgTTGCT
GAAGAAATACAGGCTGATTGCCAAGAACTTATTTCAGATTATGATTCTAT
AGACAATAATGCTCAAAGTGAAGATAATACTACCTTCAGTTGTGAACCAG
AAGATCATctggatgatgatgatgatgatgatgatgatgatgatgatgat
gacgataTCAATGTCGATAATGGGATGGAAATAGAAGGCGATGGTGCAGA
AGAAAATGGTGCAGAAGGAAATGGTTATCGTAGGTAAATCTATTATGTAT
TATataattctttttgtttcatATCCCAGTCTGGGAAACAAAGGCATGTA
CGCGGTGTACGTCCGATGTATACCCCTTTTGCTATAAAATCACGATCAAT
GTTTATGTCATGTTGGATAATTTTTTGAAGTATgtatccagacgatctca
atcgaatggaatcgactatcgaaccagtcgaaccaaatcgaacccAAATG
ACCGATCAAAATgcgattgtcaaacgcaatcgaatctcaatcgaacgtca
aaattctgggtaatattcgattggttcgattgttgttcgactacATTCGA
TTATTGCTTCCTAATCCTAATCGTTTTATAGGAGCAAATTATGACAGAGA
GCAGTGAAATTTAACACAGtacagacacccttgagaataaactctattgt
ctttcaatagaccttttttcgaagaggacgtcctgttgaataattatgta
gtccagccataaaaacaatgatagagccatgcataattactgtatcatgc
aaattgtaataattatgcatggctNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNatagtttccaattccaaaagtA
ACCACAGAACTTCCTAAtcctaatcgaacgcaatcgaacatcaatcaaac
gcaatcgaatatcaatcaaatcttaaaattgcggtaatattcgattgagc
tTCGATTGTCGAaggcaatcgaatttcaatcagtcggttgcattcgattt
ggttcgactgattcgatcgtcgattccgttcaatTGGGATCGTCTGGATG
TATGGATAATGGGTCTTATAGAtagataaaattaaaaaatccagctgact
ccagcatcaaaataatgacaAGAAAATTTAGCACacacttttactaatta
ttaaTTAGTTAGTTAGTTTCTAATATTATTCAACATGAAATTGTGATTAG
GcagccatcgaaaaattgttctgttcgcgTCACCACCTCTGCtctcaaga
aaaataaattgagtTCCTGGCACAGTTTTCAAAAACCCAGGAATCTTTCC
GAACGCCCACCCGTCTGCACTTTTAACACCCTTTGCGACATGAACAGAGC
AATTTTTAATGGTTGCCTTGgctcaaaattttctaatagtactaccttaa
aggaagaaattttggcaggaatttgatttggcggatggccaaaaaagttt
tttcagagggaatttaatttggcagatggacgaaaaaactaaatttggtg
ggaatttaatttggcggtcgcttaaaaatttaaccttaagatggtgTCAA
AACAGCGAagaaatagcaaaaacaccttaaaagagatcatattttcaaaa
tgtttaatttggcgggaatttaatttggcggatttccgccaaatccgcca
aattttctttccgccaaaatttcttcctttaaggtactttTTTAGGATCT
TGCTCAAGAAATTAGGTTTAGCGGACTGAATTTTATCATACTGATTTTCT
ACCAATGGCAGCAGCCAAGAATGGTAAAAGTATGCTAGGAAAAACAGTTC
AAGTTActgacaaaatttaattttgctgCCATCCcccaaattaaaaaatt
caagatgggtTTGCCCTGTGAGTCAGAGATATAGGGCTCAAAATTCTGAT
TTCAGCACTGTcccttactaaaataaaaacaagtttaGAAAGTTGTgcat
tttatttccaaaaaaaaagtgaCAAGTGAAAGAACAAACTTAACAAAATT
ACATTGGCTGTTTTATCAACTGTCATTTGGAGGCAGGGGGGTTGGTACTA
AAGTCTCAGACATATATTCTTATATTAAAAGGTTTTGGAGAATTTTTTGC
ATAgcaccccccccccaatttagagaagtggtattttagtacacatgtac
gaaaacatttttgagacattttgacttgatttttcaatttttgcatctta
aaattcattttttgcacaaattgATACTTTTGAACGGTACtacttaaaat
tttgcaaatataTATTTCAGACATTTGACtgaatggaaaaataattgaaa
ttttgttcaaaagagaaaaatgatttttaagtttattttacCACCACGTT
GCTAAacgtcatgatgtctgagattcTAAGACCCCCACCCCGTTAGAGGT
GGCAAATTCAAATTGATATCACAAACCATGGTATCAATTTGATCATCATT
ATATAAAAGAATAACTCCAGAGGCTATGCTAATAGGGGAACTGGTGAAAA
ATTGTAGTACCTTTTGGCCTACTTCTTATCCAAATTTCCTCTTTGAGTAA
GGAAGTTCGAGGGACTGAAGAAAAGTGGTAGCACTACTAGTCGTAGACGG
tatttttcaagcacttttttaccactGTTTTTCGGTGgcaaaaactcaat
ttgaaattgagttttcaaactcaattttgTGAAGAAAAATATGTGAAAGG
TAAATAATGCAAAGAAGAGAAATTACGGtacaaaaaatcaaaggaaaatc
AACTCGATCTATTGCAATGAGTCTAACAAGTAGTTTTCGaaggtaaaatt
tcaaatttatcttCTTTCACGGTATGAAAatgagtttagtttagtttatt
TAGTTCAAAATAAAAGTATTGCCTTTATCAAAAGATAAGGATTAACAACA
ACGGAACCTAAATTTTTCAGAACAAAACGGTGGTTGTAAGGAAAAGTGTT
TGGAAAATACCCTGTAGCAGCCTGTAGTACTACTTATCAAGCTTCAAATG
AATAtcatgttttcaattttgaaatttagtgTTATCATGGAGAATTTGCT
TCAAAC Coding sequence (CDS) from alignment at sc0001990:29971..33226+ >TCONS_00039007 ID=TCONS_00039007|Name=TCONS_00039007|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0001990:29971..33226+ (Clytia hemisphaerica)
GCAGTTGAGGAAGAAGTTCAAAgtgattcttcttcttcttatgTTGCTGA
AGAAATACAGGCTGATTGCCAAGAACTTATTTCAGATTATGATTCTATAG
ACAATAATGCTCAAAGTGAAGATAATACTACCTTCAGTTGTGAACCAGAA
GATCATctggatgatgatgatgatgatgatgatgatgatgatgatgatga
cgataTCAATGTCGATAATGGGATGGAAATAGAAGGCGATGGTGCAGAAG
AAAATGGTGCAGAAGGAAATGGTTATCGTAGtgTTATCATGGAGAATTTG
CTTCAAGCAGTTGAGGAAGAAGTTCAAAgtgattcttcttcttcttatgT
TGCTGAAGAAATACAGGCTGATTGCCAAGAACTTATTTCAGATTATGATT
CTATAGACAATAATGCTCAAAGTGAAGATAATACTACCTTCAGTTGTGAA
CCAGAAGATCATctggatgatgatgatgatgatgatgatgatgatgatga
tgatgacgataTCAATGTCGATAATGGGATGGAAATAGAAGGCGATGGTG
CAGAAGAAAATGGTGCAGAAGGAAATGGTTATCGTAGtgTTATCATGGAG
AATTTGCTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039007-exon-sc0001990-1491911889:29971..30253 | TCONS_00039007-exon-sc0001990-1491911889:29971..30253 | Clytia hemisphaerica | exon |
| TCONS_00039007-exon-sc0001990-1510915933:29971..30253 | TCONS_00039007-exon-sc0001990-1510915933:29971..30253 | Clytia hemisphaerica | exon |
| TCONS_00039007-exon-sc0001990-1575043694:29971..30253 | TCONS_00039007-exon-sc0001990-1575043694:29971..30253 | Clytia hemisphaerica | exon |
| TCONS_00039007-exon-sc0001990-1491911889:33200..33226 | TCONS_00039007-exon-sc0001990-1491911889:33200..33226 | Clytia hemisphaerica | exon |
| TCONS_00039007-exon-sc0001990-1510915933:33200..33226 | TCONS_00039007-exon-sc0001990-1510915933:33200..33226 | Clytia hemisphaerica | exon |
| TCONS_00039007-exon-sc0001990-1575043694:33200..33226 | TCONS_00039007-exon-sc0001990-1575043694:33200..33226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001990 | supercontig | sc0001990:29971..33226 + |
Blast
The following BLAST results are available for this feature:
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