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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039001 ID=TCONS_00039001|Name=TCONS_00039001|organism=Clytia hemisphaerica|type=transcript|length=546bp
CCCTGAGGCTCCATCCTGGATAATGGAGAACGCGATGCATTGTTTGACCT
ACTTGATCAATCTGATCAACAACAACTTGAATGTGATTGAGCCCGCTGAG
TTGACCTACACGCTTCCAACGGACGTCAAATGTGAGAAAACCGTCCCAAA
AGATGACGTCGACGAAGAATCTCTTGAGCGAATTAAGAACTGTGTCGTTG
ATCCAGATGAGTCCGTCCCTTTGGCCGATCAAACGAATGACGAGTTGGAA
GTGTTTCGTGTGGTTGGAGAAGAAGACATGGTATTGGAAGATGAACCGAG
CGAAACTCACGACGAAGGAATTTCTATTTTAACATCTCCTGATCATTCAG
TGTCTAAAGACGAGCTTGATGTCGAGAAACTTATTGGTTATGTATCATCA
ACAACAGACTTTGAATCAGATATTGAGCCCCCACGAAAACGGGCACGTGG
AAACACAATCAGAAGCCCTGTACAAATGCCAAGTACATACACAGTCGCGA
AGACTGTGTTGTATTCAATCGTTGAGAGAGTTGTCGAAATTGAAAA Run BLAST on NCBI protein sequence of TCONS_00039001-protein >TCONS_00039001-protein ID=TCONS_00039001-protein|Name=TCONS_00039001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
PEAPSWIMENAMHCLTYLINLINNNLNVIEPAELTYTLPTDVKCEKTVPK
DDVDEESLERIKNCVVDPDESVPLADQTNDELEVFRVVGEEDMVLEDEPS
ETHDEGISILTSPDHSVSKDELDVEKLIGYVSSTTDFESDIEPPRKRARG
NTIRSPVQMPSTYTVAKTVLYSIVERVVEIE Run BLAST on NCBI transcript from alignment at sc0001985:24199..24997- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039001 ID=TCONS_00039001|Name=TCONS_00039001|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at sc0001985:24199..24997- (Clytia hemisphaerica)
CCCTGAGGCTCCATCCTGGATAATGGAGAACGCGATGCATTGTTTGACCT
ACTTGATCAATCTGATCAACAACAACTTGAATGTGATTGAGCCCGCTGAG
TTGACCTACACGCTTCCAACGGACGTCAAATGTGAGAAAACCGTCCCAAA
AGATGACGTCGACGAAGAATCTCTTGAGCGAATTAAGAACTGTGTCGTTG
ATCCAGATGAGTCCGTCCCTTTGGCCGATCAAACGAATGACGAGTTGGAA
GTGTTTCGTGTGGTTGGAGAAGAAGACATGGTATTGGAAGATGGTAAGCA
TAGATTTCATTCATTTTTCGTCGGAAAAATAACCAGTAGAGTTGCAGTAT
CTATGCAATGACATGTGATACGTAGATTGCAAGAAATGATCCTATAAAAT
ATTCTTTTAACTCTAGAACCGAGCGAAACTCACGACGAAGGAATTTCTAT
TTTAACATCTCCTGATCATTCAGTGTCTAAAGGTATGCCTTCTTTTAAAA
TTTGTTTTGGAATTATGTCAAGTTTTCAAATATAGTTTGGACCAAAATCT
TCGAAGATACTTCAAATGTAATTGGTTATGTATGTCTCAGAAATACTTCT
TTTTTCATTTAGACGAGCTTGATGTCGAGAAACTTATTGGTTATGTATCA
TCAACAACAGACTTTGAATCAGATATTGAGCCCCCACGAAAACGGGCACG
TGGAAACACAATCAGAAGCCCTGTACAAATGCCAAGTACATACACAGTCG
CGAAGACTGTGTTGTATTCAATCGTTGAGAGAGTTGTCGAAATTGAAAA Coding sequence (CDS) from alignment at sc0001985:24199..24997- >TCONS_00039001 ID=TCONS_00039001|Name=TCONS_00039001|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0001985:24199..24997- (Clytia hemisphaerica)
ACGAGCTTGATGTCGAGAAACTTATTGGTTATGTATCATCAACAACAGAC
TTTGAATCAGATATTGAGCCCCCACGAAAACGGGCACGTGGAAACACAAT
CAGAAGCCCTGTACAAATGCCAAGTACATACACAGTCGCGAAGACTGTGT
TGTATTCAATCGTTGAGAGAGTTGTCGAAATTGAAAACCGAGCGAAACTC
ACGACGAAGGAATTTCTATTTTAACATCTCCTGATCATTCAGTGTCTAAA
GCCTGAGGCTCCATCCTGGATAATGGAGAACGCGATGCATTGTTTGACCT
ACTTGATCAATCTGATCAACAACAACTTGAATGTGATTGAGCCCGCTGAG
TTGACCTACACGCTTCCAACGGACGTCAAATGTGAGAAAACCGTCCCAAA
AGATGACGTCGACGAAGAATCTCTTGAGCGAATTAAGAACTGTGTCGTTG
ATCCAGATGAGTCCGTCCCTTTGGCCGATCAAACGAATGACGAGTTGGAA
GTGTTTCGTGTGGTTGGAGAAGAAGACATGGTATTGGAAGATGACGAGCT
TGATGTCGAGAAACTTATTGGTTATGTATCATCAACAACAGACTTTGAAT
CAGATATTGAGCCCCCACGAAAACGGGCACGTGGAAACACAATCAGAAGC
CCTGTACAAATGCCAAGTACATACACAGTCGCGAAGACTGTGTTGTATTC
AATCGTTGAGAGAGTTGTCGAAATTGAAAACCGAGCGAAACTCACGACGA
AGGAATTTCTATTTTAACATCTCCTGATCATTCAGTGTCTAAAGCCTGAG
GCTCCATCCTGGATAATGGAGAACGCGATGCATTGTTTGACCTACTTGAT
CAATCTGATCAACAACAACTTGAATGTGATTGAGCCCGCTGAGTTGACCT
ACACGCTTCCAACGGACGTCAAATGTGAGAAAACCGTCCCAAAAGATGAC
GTCGACGAAGAATCTCTTGAGCGAATTAAGAACTGTGTCGTTGATCCAGA
TGAGTCCGTCCCTTTGGCCGATCAAACGAATGACGAGTTGGAAGTGTTTC
GTGTGGTTGGAGAAGAAGACATGGTATTGGAAGATGACGAGCTTGATGTC
GAGAAACTTATTGGTTATGTATCATCAACAACAGACTTTGAATCAGATAT
TGAGCCCCCACGAAAACGGGCACGTGGAAACACAATCAGAAGCCCTGTAC
AAATGCCAAGTACATACACAGTCGCGAAGACTGTGTTGTATTCAATCGTT
GAGAGAGTTGTCGAAATTGAAAACCGAGCGAAACTCACGACGAAGGAATT
TCTATTTTAACATCTCCTGATCATTCAGTGTCTAAAGCCTGAGGCTCCAT
CCTGGATAATGGAGAACGCGATGCATTGTTTGACCTACTTGATCAATCTG
ATCAACAACAACTTGAATGTGATTGAGCCCGCTGAGTTGACCTACACGCT
TCCAACGGACGTCAAATGTGAGAAAACCGTCCCAAAAGATGACGTCGACG
AAGAATCTCTTGAGCGAATTAAGAACTGTGTCGTTGATCCAGATGAGTCC
GTCCCTTTGGCCGATCAAACGAATGACGAGTTGGAAGTGTTTCGTGTGGT
TGGAGAAGAAGACATGGTATTGGAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039001-exon-sc0001985-1575043694:24705..24997 | TCONS_00039001-exon-sc0001985-1575043694:24705..24997 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1575043694:24516..24581 | TCONS_00039001-exon-sc0001985-1575043694:24516..24581 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1575043694:24199..24385 | TCONS_00039001-exon-sc0001985-1575043694:24199..24385 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1510915933:24705..24997 | TCONS_00039001-exon-sc0001985-1510915933:24705..24997 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1510915933:24516..24581 | TCONS_00039001-exon-sc0001985-1510915933:24516..24581 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1510915933:24199..24385 | TCONS_00039001-exon-sc0001985-1510915933:24199..24385 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1491911889:24705..24997 | TCONS_00039001-exon-sc0001985-1491911889:24705..24997 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1491911889:24516..24581 | TCONS_00039001-exon-sc0001985-1491911889:24516..24581 | Clytia hemisphaerica | exon |
| TCONS_00039001-exon-sc0001985-1491911889:24199..24385 | TCONS_00039001-exon-sc0001985-1491911889:24199..24385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001985 | supercontig | sc0001985:24199..24997 - |
Blast
The following BLAST results are available for this feature:
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