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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038981 ID=TCONS_00038981|Name=TCONS_00038981|organism=Clytia hemisphaerica|type=transcript|length=951bp
TATAGAACAAAGAAATGTTTAAAGAATATTTAAAAACATTGAAAACTCTT
TCTACAGACTTTGAAGCTTTTGTAGACTTTTCCACTCATCTCATAAAAGA
AGTCGGAGACAATGAAGTCTTCCAATGCAAACTGGTACTGAATAATGATC
TCTCGAATTTTCCTGAAGATAAAATGTCAACAAATCTTATCCCAGATATC
CAATCATGTGAAAATGAAATCGCTCTAAGGACGACAGGGGATGGTAACTG
CCTTTTTAACTGTGCAAGTATTATGTTGGTTGGAGATGAATCGATTTCCG
AAGAATTAAGACTTCGAACTTGTCTGGAACTTGTATTGAACTTGTATTTT
TATGCTGATCATGATTTTCTCAATCAGCAAATAAAAACCGTCGACGGGAA
ATCTTATTATAAAGTGGAAGCATTGTATGATgttgtttgtttttcaaaaa
catcatcaaagaTTTTTGAGCAACAAGGATTTCAAAAGGCTTTGGAAGCG
GAAATGACGAAAACATCATTTAATGGACAATTTTGTGGTATTTTACAAAT
TGCGGCTTTATCGTCTGTGATTGGATACCCCATAAAGTTGATTTAtccaa
atcaaaatttcaatttactttTGTTGTACCAGGGCTTAGTTTTACCGCGA
ATAGAAAGGTCGGAAAAACAGTTAACTATACTTTGGAGCAGTACAAACAA
TTGTGACCAAGATGTAAAGTATTTTATCGCAAATCATTTTGTACCTTTGA
TTAAAAGAAGAGAACATCTATCAGAATGTCAATCTTTTGATAGTTCTCCC
GGGCAGACACCTATCATAAATTTTTATCCACACAAGAGGAAAGAACCACC
TGAAGAATTTGAATTACCCTTTCAAATGGATAAAGATTGGTATGCAAAAG
TTGGCAGAAATGATTTGTCAAACGTTAAGAGATATAACTCCAGAAAATGT
A Run BLAST on NCBI protein sequence of TCONS_00038981-protein >TCONS_00038981-protein ID=TCONS_00038981-protein|Name=TCONS_00038981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MFKEYLKTLKTLSTDFEAFVDFSTHLIKEVGDNEVFQCKLVLNNDLSNFP
EDKMSTNLIPDIQSCENEIALRTTGDGNCLFNCASIMLVGDESISEELRL
RTCLELVLNLYFYADHDFLNQQIKTVDGKSYYKVEALYDVVCFSKTSSKI
FEQQGFQKALEAEMTKTSFNGQFCGILQIAALSSVIGYPIKLIYPNQNFN
LLLLYQGLVLPRIERSEKQLTILWSSTNNCDQDVKYFIANHFVPLIKRRE
HLSECQSFDSSPGQTPIINFYPHKRKEPPEEFELPFQMDKDWYAKVGRND
LSNVKRYNSRKC Run BLAST on NCBI transcript from alignment at sc0001981:1221..2830- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038981 ID=TCONS_00038981|Name=TCONS_00038981|organism=Clytia hemisphaerica|type=transcript|length=1610bp|location=Sequence derived from alignment at sc0001981:1221..2830- (Clytia hemisphaerica)
TATAGAACAAAGAAATGTTTAAAGAATATTTAAAAACATTGAAAACTCTT
TCTACAGACTTTGAAGCTTTTGTAGACTTTTCCACTCATCTCATAAAAGA
AGTCGGAGACAATGAAGTCTTCCAATGCAAACTGGTACTGAATAATGATC
TCTCGAATTTTCCTGAAGATAAAATGTCAACAAATCTTATCCCAGGTAAG
CCTTTTTATGCAAACATTTTCTTAAGCAAAAACTTTTTTATTGTACAAAA
CGCCTACGCGATATTATATGGTAACTCATATCATTGGAAGCAGGCGCGTA
TCGTTTTACTGGATTTTTAATTGGTCAATTATAATTTTTGACATTTCATA
ATCTTAGAATCCTTAAAAAGACCATGTGATTTCTTCTCTGGAATTCTTAA
AATATAAAATACGAAAGAGCTTGTAATTAGAAAAAGCCGAGTAAACTTTT
GAAAACAATTCAAAACTCGCGCCACCACTTAAAAAAATAGTTCTGTTTGA
CGTCATCACTTTTGTTTATCAAATCATAACAATAAAAAATTTACCAATCA
GAAACTGCGGACAAAATTGGTATCCTCGATAATCCCTGTACAAACAATGA
CATGCTTTTACTTTTTGCTTTTCTTATAAAATTCTTCTTATAAATAAAAT
GAGAGTAAAAGTTTTAAGCATCTAAGAAGGAGAGCGTTTTCAGGCTTGGA
TACAACAAAGGTAGGCTATAATCAATGGAGGAGAGTTATTAGATATTATT
TTGATATATAATATTTTAGTTCATTTTTAAGTCCTGGTTCTTTATCTATT
GTATATTGTTTATGCTCAGCATATACTTTATTCTTTTATCTTCATTTTGT
TTAGATATCCAATCATGTGAAAATGAAATCGCTCTAAGGACGACAGGGGA
TGGTAACTGCCTTTTTAACTGTGCAAGTATTATGTTGGTTGGAGATGAAT
CGATTTCCGAAGAATTAAGACTTCGAACTTGTCTGGAACTTGTATTGAAC
TTGTATTTTTATGCTGATCATGATTTTCTCAATCAGCAAATAAAAACCGT
CGACGGGAAATCTTATTATAAAGTGGAAGCATTGTATGATGTTGTTTGTT
TTTCAAAAACATCATCAAAGATTTTTGAGCAACAAGGATTTCAAAAGGCT
TTGGAAGCGGAAATGACGAAAACATCATTTAATGGACAATTTTGTGGTAT
TTTACAAATTGCGGCTTTATCGTCTGTGATTGGATACCCCATAAAGTTGA
TTTATCCAAATCAAAATTTCAATTTACTTTTGTTGTACCAGGGCTTAGTT
TTACCGCGAATAGAAAGGTCGGAAAAACAGTTAACTATACTTTGGAGCAG
TACAAACAATTGTGACCAAGATGTAAAGTATTTTATCGCAAATCATTTTG
TACCTTTGATTAAAAGAAGAGAACATCTATCAGAATGTCAATCTTTTGAT
AGTTCTCCCGGGCAGACACCTATCATAAATTTTTATCCACACAAGAGGAA
AGAACCACCTGAAGAATTTGAATTACCCTTTCAAATGGATAAAGATTGGT
ATGCAAAAGTTGGCAGAAATGATTTGTCAAACGTTAAGAGATATAACTCC
AGAAAATGTA Coding sequence (CDS) from alignment at sc0001981:1221..2830- >TCONS_00038981 ID=TCONS_00038981|Name=TCONS_00038981|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0001981:1221..2830- (Clytia hemisphaerica)
ATATCCAATCATGTGAAAATGAAATCGCTCTAAGGACGACAGGGGATGGT
AACTGCCTTTTTAACTGTGCAAGTATTATGTTGGTTGGAGATGAATCGAT
TTCCGAAGAATTAAGACTTCGAACTTGTCTGGAACTTGTATTGAACTTGT
ATTTTTATGCTGATCATGATTTTCTCAATCAGCAAATAAAAACCGTCGAC
GGGAAATCTTATTATAAAGTGGAAGCATTGTATGATGTTGTTTGTTTTTC
AAAAACATCATCAAAGATTTTTGAGCAACAAGGATTTCAAAAGGCTTTGG
AAGCGGAAATGACGAAAACATCATTTAATGGACAATTTTGTGGTATTTTA
CAAATTGCGGCTTTATCGTCTGTGATTGGATACCCCATAAAGTTGATTTA
TCCAAATCAAAATTTCAATTTACTTTTGTTGTACCAGGGCTTAGTTTTAC
CGCGAATAGAAAGGTCGGAAAAACAGTTAACTATACTTTGGAGCAGTACA
AACAATTGTGACCAAGATGTAAAGTATTTTATCGCAAATCATTTTGTACC
TTTGATTAAAAGAAGAGAACATCTATCAGAATGTCAATCTTTTGATAGTT
CTCCCGGGCAGACACCTATCATAAATTTTTATCCACACAAGAGGAAAGAA
CCACCTGAAGAATTTGAATTACCCTTTCAAATGGATAAAGATTGGTATGC
AAAAGTTGGCAGAAATGATTTGTCAAACGTTAAGAGATATAACTCCAGAA
AATGTATGTTTAAAGAATATTTAAAAACATTGAAAACTCTTTCTACAGAC
TTTGAAGCTTTTGTAGACTTTTCCACTCATCTCATAAAAGAAGTCGGAGA
CAATGAAGTCTTCCAATGCAAACTGGTACTGAATAATGATCTCTCGAATT
TTCCTGAAGATAAAATGTCAACAAATCTTATCCCAGATATCCAATCATGT
GAAAATGAAATCGCTCTAAGGACGACAGGGGATGGTAACTGCCTTTTTAA
CTGTGCAAGTATTATGTTGGTTGGAGATGAATCGATTTCCGAAGAATTAA
GACTTCGAACTTGTCTGGAACTTGTATTGAACTTGTATTTTTATGCTGAT
CATGATTTTCTCAATCAGCAAATAAAAACCGTCGACGGGAAATCTTATTA
TAAAGTGGAAGCATTGTATGATGTTGTTTGTTTTTCAAAAACATCATCAA
AGATTTTTGAGCAACAAGGATTTCAAAAGGCTTTGGAAGCGGAAATGACG
AAAACATCATTTAATGGACAATTTTGTGGTATTTTACAAATTGCGGCTTT
ATCGTCTGTGATTGGATACCCCATAAAGTTGATTTATCCAAATCAAAATT
TCAATTTACTTTTGTTGTACCAGGGCTTAGTTTTACCGCGAATAGAAAGG
TCGGAAAAACAGTTAACTATACTTTGGAGCAGTACAAACAATTGTGACCA
AGATGTAAAGTATTTTATCGCAAATCATTTTGTACCTTTGATTAAAAGAA
GAGAACATCTATCAGAATGTCAATCTTTTGATAGTTCTCCCGGGCAGACA
CCTATCATAAATTTTTATCCACACAAGAGGAAAGAACCACCTGAAGAATT
TGAATTACCCTTTCAAATGGATAAAGATTGGTATGCAAAAGTTGGCAGAA
ATGATTTGTCAAACGTTAAGAGATATAACTCCAGAAAATGTATGTTTAAA
GAATATTTAAAAACATTGAAAACTCTTTCTACAGACTTTGAAGCTTTTGT
AGACTTTTCCACTCATCTCATAAAAGAAGTCGGAGACAATGAAGTCTTCC
AATGCAAACTGGTACTGAATAATGATCTCTCGAATTTTCCTGAAGATAAA
ATGTCAACAAATCTTATCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038981-exon-sc0001981-1575043694:2636..2830 | TCONS_00038981-exon-sc0001981-1575043694:2636..2830 | Clytia hemisphaerica | exon |
| TCONS_00038981-exon-sc0001981-1575043694:1221..1976 | TCONS_00038981-exon-sc0001981-1575043694:1221..1976 | Clytia hemisphaerica | exon |
| TCONS_00038981-exon-sc0001981-1510915933:2636..2830 | TCONS_00038981-exon-sc0001981-1510915933:2636..2830 | Clytia hemisphaerica | exon |
| TCONS_00038981-exon-sc0001981-1510915933:1221..1976 | TCONS_00038981-exon-sc0001981-1510915933:1221..1976 | Clytia hemisphaerica | exon |
| TCONS_00038981-exon-sc0001981-1491911889:2636..2830 | TCONS_00038981-exon-sc0001981-1491911889:2636..2830 | Clytia hemisphaerica | exon |
| TCONS_00038981-exon-sc0001981-1491911889:1221..1976 | TCONS_00038981-exon-sc0001981-1491911889:1221..1976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001981 | supercontig | sc0001981:1221..2830 - |
Blast
The following BLAST results are available for this feature:
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