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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038975 ID=TCONS_00038975|Name=TCONS_00038975|organism=Clytia hemisphaerica|type=transcript|length=651bp
CTAGAAAAACTTAAGTactaataacaaaaaaatgaaatataaaagCTAAT
AAAACTGGTAATGTCAGAGGAAACAATTGCAAATATCACAGAATTTGGTC
ACCAAATCCTTGATGATATTAACCAAACTATTGATACTGGCATCTTCGAC
AATGAATGGATTGTGTTCAAATTGgaaacattcaaaaaacttttaagtAC
TGCTGTTAGCATATATGATATATGCGAGGAGCCAATAAATAGAATCATGT
CTATCATAGATTTGCTACAAACTGTTCCTCGCCAAGAGACAAATAAACCA
TCAGGAATCTCAGACATGCATCAATCACATTCAAGTAAACCTGGGCGGCC
AAAAATTCTTATTGACTGTGAAAAGCTTGATTACTTATTCAATTTAAACT
TCACAGCAAACGATATTGCAAACTTTTTTGGTACTAGTAGAAGAACAATA
TGTCGGAGGTTatcagaaaaatcaatgtcaaTCGTCGATACGTATTCTAA
AATGTCAGATTCTCAATTAGACGAATGTgtaaaaaatattcttgacGAGT
TTCCCAGAACTGGATACCGCAGAATGAAGGGGTTTTTACAATCAAATGGA
CACAGGGTACAAGAGAAAAGAGTTCGGGCTTGTATGCATCGAGTAGGTTT
N Run BLAST on NCBI transcript from alignment at sc0001980:17733..19350- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038975 ID=TCONS_00038975|Name=TCONS_00038975|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at sc0001980:17733..19350- (Clytia hemisphaerica)
CTAGAAAAACTTAAGTACTAATAACAAAAAAATGAAATATAAAAGCTAAT
AAAACTGGTAATGTCAGAGGTAAAATTTCTGTCAATGATCAATCTTTGTA
TGTCTAGTCATGAACTTGATGTTACCTTATTAATGGAACTAATTTTTGCG
GGAACTAATTTTTGCAGTGCAAAATAAAATTGAAAAAGTCGTATTTTGCA
GGAATTAATTTTTGTGGTTTTGCCCTTTTTTGGACAAATTTCTTTCATTT
TCCTAGTAAACAAACAATAGGAAATTCCAACATATTTCAGATTAGTAAAG
ATTTTCAAAATTCAACTTTTGCTAGTATAGAAGATTTTCTTTTACTTACT
ATTGAAATATCACTAAATTGATCCCTGAACTCCTTCAACAAACTAAAGAA
ATCATGTAAGCAATGAAGTCACAAGTCTTGAAATGTTCTACTTTCAATTT
CAGGAAACAATTGCAAATATCACAGAATTTGGTCACCAAATCCTTGATGA
TATTAACCAAACTATTGATACTGGCATCTTCGACAATGAATGGATTGTGT
TCAAATTGGAAACATTCAAAAAACTTTTAAGTACTGCTGTTAGCATATAT
GATATATGCGAGGAGCCAATAAATAGAATCATGTCTATCATAGATTTGCT
ACAAACTGTTCCTCGCCAAGAGACAAATAAACCATCAGGAATCTCAGACA
TGCATCAATCACATTCAAGTAAACCTGGGCGGCCAAAAATTCTTATTGAC
TGTGAAAAGCTTGATTACTTATTCAATTTAAACTTCACAGCAAACGATAT
TGCAAACTTTTTTGGTACTAGTAGGTTAGTTGATTTGTTTCATGATTGAT
ATGACTGAAATTTGGCGAGAAAAAAACTTCTTAAAGGGACATTTAAAAAG
TGCGTTTGTCGCCGAGGGGGGGGGTGGGGTCAGCCAAAAAGCGAACGAAA
ATGAGCAGAGAGTACTGTAGTCAAGCTTGTCAGTACGTTTACCTTTTTGA
GGGGGGGGTGTGCTCGTAAAGTCCAATACTAATTCTGTTGTTAACTTAGT
TGTCCACTTTGTATTAGTTTGACTCATAGCATTTTATATACATTGCATAT
ACATAAAATATTTCGTCTTTCTTGTAAGAAGAACCAATATATTTTGGAGA
TCAAGAAAATAATGATAAAAAAAAGTCGGAACAGGAATTTAAAAGCTTTT
GCATTTTTTTCTTGGAAACTAATTTTTGCAGTATCAGTGAATTTTGGCTG
TTACTTAAATTATTTCACCAAATTTTTCTAATTCTGTAGATTCTGCGGTT
AAGGCCAGCAAAATAAAAAAACTTACAAAAATTCGTTCTTTAAAAAAATA
TATTTTGTTTGTTTTTTAATTTCTATATGTTTAGAGACACTTTTAATCGT
TTTTTAGAAGAACAATATGTCGGAGGTTATCAGAAAAATCAATGTCAATC
GTCGATACGTATTCTAAAATGTCAGATTCTCAATTAGACGAATGTGTAAA
AAATATTCTTGACGAGTTTCCCAGAACTGGATACCGCAGAATGAAGGGGT
TTTTACAATCAAATGGACACAGGGTACAAGAGAAAAGAGTTCGGGCTTGT
ATGCATCGAGTAGGTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038975-exon-sc0001980-1575043694:19282..19350 | TCONS_00038975-exon-sc0001980-1575043694:19282..19350 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1575043694:18527..18897 | TCONS_00038975-exon-sc0001980-1575043694:18527..18897 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1575043694:17733..17943 | TCONS_00038975-exon-sc0001980-1575043694:17733..17943 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1510915933:19282..19350 | TCONS_00038975-exon-sc0001980-1510915933:19282..19350 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1510915933:18527..18897 | TCONS_00038975-exon-sc0001980-1510915933:18527..18897 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1510915933:17733..17943 | TCONS_00038975-exon-sc0001980-1510915933:17733..17943 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1491911889:19282..19350 | TCONS_00038975-exon-sc0001980-1491911889:19282..19350 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1491911889:18527..18897 | TCONS_00038975-exon-sc0001980-1491911889:18527..18897 | Clytia hemisphaerica | exon |
| TCONS_00038975-exon-sc0001980-1491911889:17733..17943 | TCONS_00038975-exon-sc0001980-1491911889:17733..17943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001980 | supercontig | sc0001980:17733..19350 - |
Blast
The following BLAST results are available for this feature:
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