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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038973 ID=TCONS_00038973|Name=TCONS_00038973|organism=Clytia hemisphaerica|type=transcript|length=2983bp
cAAAACTGTTCATAGCACTTTTATATACACGTTTTCAGAAGCtcgatcaa
ttttttttcgttgagggtgacttttttcttatttttctatttttcagaat
cACTTTTTTGTTAACGAAGGTGTATCGCATGCTCACAATGCCCCCAATTC
TTGATAAAGTAGTAAGATAATAGGTACTTGCCGACTCAAGCTTAGAcctt
ctttaaaattttcttttaataggAAACCTGCCATCAAGGAATGGGCAATT
TGTGACATTTGTCGAGAAGTGATTGATAACTCGCCATCACACCTGATATC
CTGTAAATGCAGGTTTCACAGTGAATGTCTAAATGAATGGATGGAAAGAA
GTTTGAATTGCCCAACTTGTGGCACAAAGTCATGCACGAAATATGCTGAT
AGTGAGATGTATGATGAGATCATCGAACTTTGGTATTATAAATTTTCAGA
CACTGTCAACATAGATATTAAAGATCGATCTGACATCACAATAAGACGGT
CTAAATTATATGAGGACAcaaccgcaaaaatttcaagaatctttaaaaaa
ggacTCGTTCCTCTAAATCTTGATTTCACTGATGAAGATGCTGCAGACAA
TGGTGGACCAACCAGAGAGTATTTTTGTGAACTATTCGACCTATATATAG
GTAAATTGGTCCACGGAGAGACGAGAAGATATACATTTGTCCACGATCTG
GTCAGACTTCAAAATaaagaatatcaaatttttggatacCTAACTGCACT
GGCTTTGGTCCACGGATGTTGTGGTCCACGGTATTTTTGCCAGTCTTTGA
CCGATTTCATTTTAACCGGAAACGCAGAGCCAACCATTGACGAGATTGCG
GATCCAGAAATTAaacagaaacttcaaaaaatcgCGGCATGCCATGATGA
GAAATCTTTTCAAGAGCTAATGGGGGACTTTATGGAAAGATTCGACTCTG
GTTATATGGCTTCCACAGTATCTTTTTACCAAAAAGATGAACTAATTAAA
ACCATGGCATACCATTATGTCATTTCATGTTCGCACCAAGAAATCAACCA
ATTTTTAAGTGGTCTTGAAACTGGTCACGTTCTTTCGACATTAAAATGCC
ATCAAGAATTCAGAAAGGAGTTTGTGTATGACGAAAAGCTAATAGGTGCT
GACCCTGTGAAAAGATTATTTAAGAACAACATGACACATTATTCTGAAGA
CAAGGAAGAGCGTCGATTGGAGGGAAATGTTTTCTTCAACTTTCTAACca
tgtttgaaaatttggaagATTCCCAAATCGAAGTAGATATGCAAGAGTTT
GAATCGGAGAAGATTACGATCAAAATTGTCTCTTTAGCCGATGTATTGAA
GTATATAACCGGTTCAAAGTACCTGCCGTTGTATAGTGAGACAAAATACT
CAGTGAAATTTATCCATTCTCAGCCTGGGAGGCGCAGCTCTGCTAATAGC
TGCGCTTGTGAGGTTTCGCTACCCATCACGCCAAGGTATTTGAACGAGAA
AGAATTCACAAATAACTTTTTGGAAGACATGGTTATGAATTCAAGCAAAT
TTACACTTGCTTGAGTGaacttttatttaactttttagCTTTCGACTTTT
AGAGTTCATCTTTgtttaaacatttttatttatttttatgagGGGCCCGT
TCATAAGAGACGTCAGAACCTTAGGGGGTATGGTAATGAGACACTAGCAA
GTAGGCGTGGGACGGacatatttttataaataacaAATTGAAGTTACTTT
TAAtaaaaattcgatatttttttcatgGTTTTAATGATGAcaccttttta
aaaagtttttgagttGTATCTACTCTCAGGTGCTTAAAAACGGGCGTCAA
ATTGAACGGGgatgttggaaaaattttttaacttttgttcaTATTTACTA
TTTACTATCcggtaccttaaaggaagaaattttggcggggatttaatttg
gccgATTGCcggaaaagttttttcagaggaaatttaatttggcggatcag
caataaaactaattttggcggatgatggattttaaagttcaaaatcaagg
tgaaaatgttcaaaatacaccctttttgggcaaaaatagtgaaaaattga
acaaaatggCGGGAACTTGGCAGAttttggccaaatccgccaaaatttct
tcctttaaggtaccaTAACACAAAAAAGGATAATTatttttgttatcatt
tttGCTTGCTGACATTTtcgcaaaattgaaaattttctgatatttttatt
TACTAGAACAAGCACGacttttttaatcttttgtttatatttattgTCCA
GTGCCGTGAcacaaaaaatgatatttatttttgttatcataAATCGTTTT
TATAGCGGCTTTGTTACTTCACTTTTGATGGttttaaaatgtaaattaaT
GTTTTTGGTACTTATTATCGTTGTTGTATATTGTTTCAGTATACTTTCGG
CGTACAAATTTTCCCAAGCAGAAACTTTAGTGTGGTCGAAGAATtgcgaa
atttacgacattgGCAATGAAAATTGGCTTAACATGACAAAGGCTTCTTG
TATCCGATTAAAACAGTTGTTCTTTGAGGCTTTCAGTACTAAAAATATGC
TGAAATTTTGATCAATGttatcattttcatcttttaatAGAATTTTAGCT
TTCATAAACTTTAGCGAATTGCCCTgttaagaaatttcaaatacaTAAAT
TTAGCTAATATCGCGAAAGTTTTAGCTcccgaaagtttgtacgcctaaag
catACCCGTTACTGATCAGAAATAAAACGAAAAGTTAGAATCTGACGAAT
TCTGTTTGTCTGTCTGTCTGGTGATCGACCCGTGACTTCTGGCAAAATCT
CACATGTTGACACTTCTCTTACCCATTGTTGTAAATACTACTGTCAAAAT
CCGGAATCACCTTTAACCGGAGCATAGCATTTTTATAAACTCGTTATCAC
CTGAGGAAAATACCTTGTCGGGGGATGGTCGGG Run BLAST on NCBI protein sequence of TCONS_00038973-protein >TCONS_00038973-protein ID=TCONS_00038973-protein|Name=TCONS_00038973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MERSLNCPTCGTKSCTKYADSEMYDEIIELWYYKFSDTVNIDIKDRSDIT
IRRSKLYEDTTAKISRIFKKGLVPLNLDFTDEDAADNGGPTREYFCELFD
LYIGKLVHGETRRYTFVHDLVRLQNKEYQIFGYLTALALVHGCCGPRYFC
QSLTDFILTGNAEPTIDEIADPEIKQKLQKIAACHDEKSFQELMGDFMER
FDSGYMASTVSFYQKDELIKTMAYHYVISCSHQEINQFLSGLETGHVLST
LKCHQEFRKEFVYDEKLIGADPVKRLFKNNMTHYSEDKEERRLEGNVFFN
FLTMFENLEDSQIEVDMQEFESEKITIKIVSLADVLKYITGSKYLPLYSE
TKYSVKFIHSQPGRRSSANSCACEVSLPITPRYLNEKEFTNNFLEDMVMN
SSKFTLA Run BLAST on NCBI transcript from alignment at sc0001980:9887..13614+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038973 ID=TCONS_00038973|Name=TCONS_00038973|organism=Clytia hemisphaerica|type=transcript|length=3728bp|location=Sequence derived from alignment at sc0001980:9887..13614+ (Clytia hemisphaerica)
cAAAACTGTTCATAGCACTTTTATATACACGTTTTCAGAAGCtcgatcaa
ttttttttcgttgagggtgacttttttcttatttttctatttttcagaat
cACTTTTTTGTTAACGAAGGTGTATCGCATGCTCACAATGCCCCCAATTC
TTGATAAAGTAGTAAGATAATAGGTACTTGCCGACTCAAGCTTAGAcctt
ctttaaaattttcttttaataggAAACCTGCCATCAAGGAATGGGCAATT
TGTGACATTTGTCGAGAAGTGATTGATAACTCGCCATCACACCTGATATC
CTGTAAATGCAGGTTTCACAGTGAATGTCTAAATGAATGGATGGAAAGAA
GTTTGAATTGCCCAACTTGTGGCACAAAGTCATGCACGAAATATGCTGAT
AGTGAGATGTATGATGAGATCATCGAACTTTGGTATTATAAATTTTCAGA
CACTGTCAACATAGATATTAAAGATCGATCTGACATCACAATAAGACGGT
CTAAATTATATGAGGACAcaaccgcaaaaatttcaagaatctttaaaaaa
ggacTCGTTCCTCTAAATCTTGATTTCACTGATGAAGATGCTGCAGACAA
TGGTGGACCAACCAGAGAGTATTTTTGTGAACTATTCGACCTATATATAG
GTAAATTGGTCCACGGAGAGACGAGAAGATATACATTTGTCCACGATCTG
GTCAGACTTCAAAATaaagaatatcaaatttttggatacCTAACTGCACT
GGCTTTGGTCCACGGATGTTGTGGTCCACGGTATTTTTGCCAGTCTTTGA
CCGATTTCATTTTAACCGGAAACGCAGAGCCAACCATTGACGAGATTGCG
GATCCAGAAATTAaacagaaacttcaaaaaatcgCGGCATGCCATGATGA
GAAATCTTTTCAAGAGCTAATGGGGGACTTTATGGAAAGATTCGACTCTG
GTTATATGGCTTCCACAGTATCTTTTTACCAAAAAGATGAACTAATTAAA
ACCATGGCATACCATTATGTCATTTCATGTTCGCACCAAGAAATCAACCA
ATTTTTAAGTGGTCTTGAAACTGGTCACGTTCTTTCGACATTAAAATGCC
ATCAAGAATTCAGAAAGGAGTTTGTGTATGACGAAAAGCTAATAGGTGCT
GACCCTGTGAAAAGATTATTTAAGGTAATTCAAATAACATTCGAGATATA
GTACTTTTGTGTTCTCAAAACCTGGGATCAGTACAAATAACAAAAATCTT
CTAGACGTCAATACTTCTGAGCTTTAGTTATAATAATATCATCCTGAGAA
TTTACGAGGTTAGCAACAAGGAAGTATTTCGAGATAACTCATTAATGGCT
TCGTCAATGCTTGCTAAAATTtcgaaatgattttgatttgatttcaaacg
atttttatgtgaaaattttaacaacgGTTTACAAAATCTAACTACACCTT
GAAAAATGCCAATCCCCAAGGTTTATGTGCTTTTCAAGCTTGAAAAATAC
TGCATGCTTTGACTGCCTACCAATCAAATGTCACACTAAAACTGCCTTAA
AAATTGGAAATGCATTGTAAATTGGGCAAATTTCCCCTTTGAAAgtacta
aaatttaaaaagatacaCAATCCTGACCAGAAAAGAGGGCTTCattctga
ccccccccccctatccTATATTTTTTGAGGAAAATTTCCAGTCCCCTTCG
GTTTTTTTGGAAGGCgcccccccccccccctaaaaagtggttcaaatgta
catttgtaATGGATAATAAATGGCTTTTAAAGTGTTGCTCGCACTGAagg
caatttaaaaaaaaattaaatttggcaatgtTTTCCCAAAAAATGGAAAG
TgacccccctacaattaagcacacaagagtTCTTCTTAAACTTGGACATT
TTTATCGTTTTATTTTTAGAACAACATGACACATTATTCTGAAGACAAGG
AAGAGCGTCGATTGGAGGGAAATGTTTTCTTCAACTTTCTAACcatgttt
gaaaatttggaagATTCCCAAATCGAAGTAGATATGCAAGAGTTTGAATC
GGAGAAGATTACGATCAAAATTGTCTCTTTAGCCGATGTATTGAAGTATA
TAACCGGTTCAAAGTACCTGCCGTTGTATAGTGAGACAAAATACTCAGTG
AAATTTATCCATTCTCAGCCTGGGAGGCGCAGCTCTGCTAATAGCTGCGC
TTGTGAGGTTTCGCTACCCATCACGCCAAGGTATTTGAACGAGAAAGAAT
TCACAAATAACTTTTTGGAAGACATGGTTATGAATTCAAGCAAATTTACA
CTTGCTTGAGTGaacttttatttaactttttagCTTTCGACTTTTAGAGT
TCATCTTTgtttaaacatttttatttatttttatgagGGGCCCGTTCATA
AGAGACGTCAGAACCTTAGGGGGTATGGTAATGAGACACTAGCAAGTAGG
CGTGGGACGGacatatttttataaataacaAATTGAAGTTACTTTTAAta
aaaattcgatatttttttcatgGTTTTAATGATGAcacctttttaaaaag
tttttgagttGTATCTACTCTCAGGTGCTTAAAAACGGGCGTCAAATTGA
ACGGGgatgttggaaaaattttttaacttttgttcaTATTTACTATTTAC
TATCcggtaccttaaaggaagaaattttggcggggatttaatttggccgA
TTGCcggaaaagttttttcagaggaaatttaatttggcggatcagcaata
aaactaattttggcggatgatggattttaaagttcaaaatcaaggtgaaa
atgttcaaaatacaccctttttgggcaaaaatagtgaaaaattgaacaaa
atggCGGGAACTTGGCAGAttttggccaaatccgccaaaatttcttcctt
taaggtaccaTAACACAAAAAAGGATAATTatttttgttatcatttttGC
TTGCTGACATTTtcgcaaaattgaaaattttctgatatttttattTACTA
GAACAAGCACGacttttttaatcttttgtttatatttattgTCCAGTGCC
GTGAcacaaaaaatgatatttatttttgttatcataAATCGTTTTTATAG
CGGCTTTGTTACTTCACTTTTGATGGttttaaaatgtaaattaaTGTTTT
TGGTACTTATTATCGTTGTTGTATATTGTTTCAGTATACTTTCGGCGTAC
AAATTTTCCCAAGCAGAAACTTTAGTGTGGTCGAAGAATtgcgaaattta
cgacattgGCAATGAAAATTGGCTTAACATGACAAAGGCTTCTTGTATCC
GATTAAAACAGTTGTTCTTTGAGGCTTTCAGTACTAAAAATATGCTGAAA
TTTTGATCAATGttatcattttcatcttttaatAGAATTTTAGCTTTCAT
AAACTTTAGCGAATTGCCCTgttaagaaatttcaaatacaTAAATTTAGC
TAATATCGCGAAAGTTTTAGCTcccgaaagtttgtacgcctaaagcatAC
CCGTTACTGATCAGAAATAAAACGAAAAGTTAGAATCTGACGAATTCTGT
TTGTCTGTCTGTCTGGTGATCGACCCGTGACTTCTGGCAAAATCTCACAT
GTTGACACTTCTCTTACCCATTGTTGTAAATACTACTGTCAAAATCCGGA
ATCACCTTTAACCGGAGCATAGCATTTTTATAAACTCGTTATCACCTGAG
GAAAATACCTTGTCGGGGGATGGTCGGG Coding sequence (CDS) from alignment at sc0001980:9887..13614+ >TCONS_00038973 ID=TCONS_00038973|Name=TCONS_00038973|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0001980:9887..13614+ (Clytia hemisphaerica)
ATGGAAAGAAGTTTGAATTGCCCAACTTGTGGCACAAAGTCATGCACGAA
ATATGCTGATAGTGAGATGTATGATGAGATCATCGAACTTTGGTATTATA
AATTTTCAGACACTGTCAACATAGATATTAAAGATCGATCTGACATCACA
ATAAGACGGTCTAAATTATATGAGGACAcaaccgcaaaaatttcaagaat
ctttaaaaaaggacTCGTTCCTCTAAATCTTGATTTCACTGATGAAGATG
CTGCAGACAATGGTGGACCAACCAGAGAGTATTTTTGTGAACTATTCGAC
CTATATATAGGTAAATTGGTCCACGGAGAGACGAGAAGATATACATTTGT
CCACGATCTGGTCAGACTTCAAAATaaagaatatcaaatttttggatacC
TAACTGCACTGGCTTTGGTCCACGGATGTTGTGGTCCACGGTATTTTTGC
CAGTCTTTGACCGATTTCATTTTAACCGGAAACGCAGAGCCAACCATTGA
CGAGATTGCGGATCCAGAAATTAaacagaaacttcaaaaaatcgCGGCAT
GCCATGATGAGAAATCTTTTCAAGAGCTAATGGGGGACTTTATGGAAAGA
TTCGACTCTGGTTATATGGCTTCCACAGTATCTTTTTACCAAAAAGATGA
ACTAATTAAAACCATGGCATACCATTATGTCATTTCATGTTCGCACCAAG
AAATCAACCAATTTTTAAGTGGTCTTGAAACTGGTCACGTTCTTTCGACA
TTAAAATGCCATCAAGAATTCAGAAAGGAGTTTGTGTATGACGAAAAGCT
AATAGGTGCTGACCCTGTGAAAAGATTATTTAAGAACAACATGACACATT
ATTCTGAAGACAAGGAAGAGCGTCGATTGGAGGGAAATGTTTTCTTCAAC
TTTCTAACcatgtttgaaaatttggaagATTCCCAAATCGAAGTAGATAT
GCAAGAGTTTGAATCGGAGAAGATTACGATCAAAATTGTCTCTTTAGCCG
ATGTATTGAAGTATATAACCGGTTCAAAGTACCTGCCGTTGTATAGTGAG
ACAAAATACTCAGTGAAATTTATCCATTCTCAGCCTGGGAGGCGCAGCTC
TGCTAATAGCTGCGCTTGTGAGGTTTCGCTACCCATCACGCCAAGGTATT
TGAACGAGAAAGAATTCACAAATAACTTTTTGGAAGACATGGTTATGAAT
TCAAGCAAATTTACACTTGCTTGAATGGAAAGAAGTTTGAATTGCCCAAC
TTGTGGCACAAAGTCATGCACGAAATATGCTGATAGTGAGATGTATGATG
AGATCATCGAACTTTGGTATTATAAATTTTCAGACACTGTCAACATAGAT
ATTAAAGATCGATCTGACATCACAATAAGACGGTCTAAATTATATGAGGA
CAcaaccgcaaaaatttcaagaatctttaaaaaaggacTCGTTCCTCTAA
ATCTTGATTTCACTGATGAAGATGCTGCAGACAATGGTGGACCAACCAGA
GAGTATTTTTGTGAACTATTCGACCTATATATAGGTAAATTGGTCCACGG
AGAGACGAGAAGATATACATTTGTCCACGATCTGGTCAGACTTCAAAATa
aagaatatcaaatttttggatacCTAACTGCACTGGCTTTGGTCCACGGA
TGTTGTGGTCCACGGTATTTTTGCCAGTCTTTGACCGATTTCATTTTAAC
CGGAAACGCAGAGCCAACCATTGACGAGATTGCGGATCCAGAAATTAaac
agaaacttcaaaaaatcgCGGCATGCCATGATGAGAAATCTTTTCAAGAG
CTAATGGGGGACTTTATGGAAAGATTCGACTCTGGTTATATGGCTTCCAC
AGTATCTTTTTACCAAAAAGATGAACTAATTAAAACCATGGCATACCATT
ATGTCATTTCATGTTCGCACCAAGAAATCAACCAATTTTTAAGTGGTCTT
GAAACTGGTCACGTTCTTTCGACATTAAAATGCCATCAAGAATTCAGAAA
GGAGTTTGTGTATGACGAAAAGCTAATAGGTGCTGACCCTGTGAAAAGAT
TATTTAAGAACAACATGACACATTATTCTGAAGACAAGGAAGAGCGTCGA
TTGGAGGGAAATGTTTTCTTCAACTTTCTAACcatgtttgaaaatttgga
agATTCCCAAATCGAAGTAGATATGCAAGAGTTTGAATCGGAGAAGATTA
CGATCAAAATTGTCTCTTTAGCCGATGTATTGAAGTATATAACCGGTTCA
AAGTACCTGCCGTTGTATAGTGAGACAAAATACTCAGTGAAATTTATCCA
TTCTCAGCCTGGGAGGCGCAGCTCTGCTAATAGCTGCGCTTGTGAGGTTT
CGCTACCCATCACGCCAAGGTATTTGAACGAGAAAGAATTCACAAATAAC
TTTTTGGAAGACATGGTTATGAATTCAAGCAAATTTACACTTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038973-exon-sc0001980-1491911889:9887..11060 | TCONS_00038973-exon-sc0001980-1491911889:9887..11060 | Clytia hemisphaerica | exon |
| TCONS_00038973-exon-sc0001980-1510915933:9887..11060 | TCONS_00038973-exon-sc0001980-1510915933:9887..11060 | Clytia hemisphaerica | exon |
| TCONS_00038973-exon-sc0001980-1575043694:9887..11060 | TCONS_00038973-exon-sc0001980-1575043694:9887..11060 | Clytia hemisphaerica | exon |
| TCONS_00038973-exon-sc0001980-1491911889:11806..13614 | TCONS_00038973-exon-sc0001980-1491911889:11806..13614 | Clytia hemisphaerica | exon |
| TCONS_00038973-exon-sc0001980-1510915933:11806..13614 | TCONS_00038973-exon-sc0001980-1510915933:11806..13614 | Clytia hemisphaerica | exon |
| TCONS_00038973-exon-sc0001980-1575043694:11806..13614 | TCONS_00038973-exon-sc0001980-1575043694:11806..13614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001980 | supercontig | sc0001980:9887..13614 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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