TCONS_00038965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038965
Unique NameTCONS_00038965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038965 ID=TCONS_00038965|Name=TCONS_00038965|organism=Clytia hemisphaerica|type=transcript|length=2596bp
TATGCACCATGGTATCTGTGTGTCGCGAATACAGATCCGGTGATGTCTGG
AGAGCTCTGCGCTTCCTACTCGAAAAAATAGGAAGAAATGGTAAAGTTCC
TATCTATAAGAAGAATCTTTTATGTCTCACCTATTGCTCACCTTTTATAA
TTGTTCTGAAACTCAAATACGCCACCTCAAACAAAACAAATTACACTATG
ATCAGAAATGGAAGAATCAAATTGACTCCAGTTACTGTTCTACTCTTTGT
TTACTTTGTTTTTAGAATGGTACAATCAATGCTAATACTTTCGTACAGGT
GTATAGGGAATATAACTTTGCACAGTATGAAATTGAAAAACGCCTGTCAT
TTTCTTGGTTTGACTGTCCTGCTTGCGGAGATCAACAGCATTCCTGTCAC
GTGGACGGAAACTGCAAGCTTTATCGTTATAAAACATCGGGGAAAACTCA
GAACCTGTCCATTGTGGTGGAAGTATTTTGAAAGCAGCTCAAAATGTTTC
TAGGAAAAAAGCATCATTGGATGAAACTGGTTTCGAATATTGTGTATGCA
GACATGGTGTTGCACAGCGCGGTGTTAATATGTATAGGGGAGAGATTTTT
GGCTATGCCTACTACTTGCAAAAGGGAATCATGGTTGACAACAATGTAAA
GTTTATGTGGTATGATGTTATCTGTAAATATTGGGCATGGCTAGAATCAC
ACGACCCATTCATTAAGGAAGATATGAACCCTGCCCTATCGGTTCTGCAT
GGTAAAATGCATCAAATGCTTTGTCAGGTTAAATATGGTGGTAGGTGGCA
GACAGGTGCTGCTTTAACAAGTGGAGAGGAAGCTGAGCAAGTCAATAGTT
ATTTGTCCAGATTGACAAACACTACAAAATACATGCTTCCACAAAATCGA
GACGATACCATAACTGAGTTTGCTATGGATTGGAACGGACGCAAAATTCG
AAATCTGGCAATGACACTTGTCCAAAGATATAAAAAAGTTCAAAAAGAAT
TAGGAAAAATATCTAAACCCACAAACTTCGATGAACTTGAACAGAAGAAA
CAGGATTTTATTTTAACTACTCAAGAATACGCTAAAAAAGGAGAAGGAGA
TGAAAAAGAAAAACTAATGGAAGAAATAGCAAAGATCAGATTCGAAGTTG
CAATGAGAAGTGCCATGATTGGTAAATTTGCTGCATCGAGTAAACAAAGA
ACAAAGCTTAGACGTAAAAATACTAACGACAACGAAAAAGCCGATAAACT
TGAGGCGAAGTTGAAAGAAATCTTTGGAAACAGTGACAGTTGGAAAAAAC
ACTTAGAGGAGACAGAACGTAAACTTGAAATCCGGAAAAAGTCAAAACAA
ACGATTGACGATGGCATGTTGTACCAGAGGCACTTAGAAGAGAAAAAGCT
TTTAGTCGAAGAAATGAAAAATTTTACTAGCCACTACAAAAAGAAACTTA
TGTCCCTGAAAACTGGAAAAAGTTGCGCTTTGGCTTCAAATTACACTTCT
GATATACACGACAAGCCAACGCTGGAAATGCAACACGATACCTTGATGGA
AGAAGGGGAACAAAATTTGAGAAGGAAAGCTATTGACTTGTGTTCGCAGC
AACTATCAATCGGAATCGAACTCTTCAGCAAAGTTGTTACAAATGATTTT
TCGGAAATTCCAGACGAAGAGAACGAAAGTGAATTTCCCAAATCTGACCA
TGAAACCAGCGACACGAGTAGTGATGAAATAGACGAACACAACGAATCGT
GACTTTAATTTGTACACGCCTTTTTATAAGAAAAGTGTACTTTGGATGAG
GGTCAAGTGTTCTTAAGAAATTGCCAAAATTGAGGGTGAAATATTCTTAA
CGTATTCTTAATTCTTTAGACTTGTTTTGGACTTTGAGCTAAAATTACAT
TTCTGCCTAAAAGTTTAAAAAACTAAGGAAGTAGTTTTCTCAATTAACCA
AACACAAAATGACTGTATTCTTATCAAATTCTGTGAACTCACCCTAGAGG
TTACTCTTAGGGTATTCTTACAATTTTTCCAATTTTCACCCTGATATTCt
gatagaagatattcttacaaaaaaaagcgtgtatgaaaatgaaaatgctt
acGTTTATTCAACTCACATAATACAACAGTACTTTAATTACAAATTATGA
AGAGTAAGAATTGAAAACTTGATTTGGCTATTATGATGTTATTTTATCTT
TGAATATCAATAaaattatgatatatttttaAGACATTATTTATCAAAGT
agagtttatttatttttatgtcTTCCATAATCTAGGGCGTCTTTCTTGCG
ACTAAACATTATACAGTCTAAGTATTACCAACCGAATCAAACTTCCGAAC
GTCATATCTCAGTATTCTGATTTCGAGGGTtatatttacaatttagaaTT
CCTCATTCTGTACGATGATAGTCCTTATCCTCGTATTTATTCGAGTTGTT
agatatttatatattttatacacaCATCATATACTTTATATCAACACTTT
TCTTGTAAGAAAAACCAATATTTTTGGAGATTAAAGAAACAATGTTAAGA
AAaaatattatgctgatataagcacaATAAACCTTTTCAAATCGCA
Run BLAST on NCBI

transcript from alignment at sc0001978:25695..30292+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038965 ID=TCONS_00038965|Name=TCONS_00038965|organism=Clytia hemisphaerica|type=transcript|length=4598bp|location=Sequence derived from alignment at sc0001978:25695..30292+ (Clytia hemisphaerica)
TATGCACCATGGTATCTGTGTGTCGCGAATACAGATCCGGTGATGTCTGG
AGAGCTCTGCGCTTCCTACTCGAAAAAATAGGAAGAAATGGTAAAGTTCC
TATCTATAAGAAGAATCTTTTATGTCTCACCTATTGCTCACCTTTTATAA
TTGTTCTGAAACTCAAATACGCCACCTCAAACAAAACAAATTACACTATG
ATCAGAAATGGAAGAATCAAATTGACTCCAGTTACTGTTCTACTCTTTGT
TTACTTTGTTTTTAGAATGGTACAATCAATGCTAATACTTTCGTACAGGT
GTATAGGGAATATAACTTTGCACAGTATGAAATTGAAAAACGCCTGTCAT
TTTCTTGGTTTGACTGTCCTGCTTGCGGAGATCAACAGCATTCCTGTCAC
GTGGACGGAAACTGCAAGCTTTATCGTTATAAAACATCGGGGAAGTTAGT
ATCTTTTTTCCTGTTTCCCTTTAGGTACATGTCACTCGTTTTCATAAAAA
TATGCCGGCAACAAATTACTGAACTAAATAAAAAGGATTTATACAGCATT
TAGAAAATGATATTTTTATGATATGTTTAACTCAAAAACAATTTTGCTCA
TAATTGAACTACTTGTAATATTTTTCTCATAATTTAGACTTGTATCAAAT
TCTTACTATGGTGACATTTTCATTGCCAAAAATCAACATGTAGATGACCT
TTTGGAAGAACTGAACTACAATCCAAAACGGGTACTTTAAATAAGTTTTA
ATGATTGTAAAGTCTGATACTTTTAAACCAGAGGAACTTAACTATCAATT
GGTTGTTGGCTCATATCTCTGTATTGTATTTCTTTAGAACTCAGAACCTG
TCCATTGTGGTGGAAGTATTTTGAAAGCAGCTCAAAATGTTTCTAGGAAA
AAAGCATCATTGGATGAAACTGGTTTCGAATATTGTGTATGCAGACATGG
TGTTGCACAGCGCGGTGTTAATATGTATAGGGGAGAGATTTTTGGCTATG
CCTACTACTTGCAAAAGGGAATCATGGTTGACAACAATGTAAAGTTTATG
TGGTATGATGTTATCTGTAAATATTGGGCATGGCTAGAATCACACGACCC
ATTCATTAAGGAAGATATGAACCCTGCCCTATCGGTTCTGCATGGTAAAA
TGCATCAAATGCTTTGTCAGGTTTGATTTTATTTAATTTACCATAAATTT
TCATATTTTCTTATTTGGGCGAGAATTTATTTCAGCGAGTCGCCAATTGT
TTTAATCGGTGAGTCATGGAATTTTTTAATTTTGGTGAGTCCTTATTTAG
TGCTCGCCATCAAAATTACTATTCTATAGGTATATAAATTGAAATTTTAG
GTATAATTTTTTACGGGCAGTCACAAAAAGTTGATATGATAACAATTGCT
TACTTTTTTATTCCTCAGGTTAAATATGGTGGTAGGTGGCAGACAGGTGC
TGCTTTAACAAGTGGAGAGGAAGCTGAGCAAGTCAATAGTTATTTGTCCA
GATTGACAAACACTACAAAATACATGCTTCCACAAAGTATGTATAGAATT
AGACATTTTAACGATTTTGTAAGACAATGATGACATTTATTTTTCTAATG
ATTTAGGTAGCATTTTTAACGAATTTTTTCTTATGTAATTATGATTCTTT
ATTCAAAGATCGAGACGATACCATAACTGAGTTTGCTATGGATTGGAACG
GACGCAAAATTCGAAATCTGGCAATGACACTTGTCCAAAGATATAAAAAA
GTATGAAGTAGTCAGTGTTCTCTGAGATAATATTTTTGATTAGTACTTTC
TCAAACATCAAATTATAATCAATTCGTTTTATCAAACTTGAACCATCCTT
GTGTTTTGCGCTTTACTACATTTGAGGAAATTCGAAATGTTTAATTACTG
TTTTCTATCTATTTCAGGTTCAAAAAGAATTAGGAAAAATATCTAAACCC
ACAAACTTCGATGAACTTGAACAGAAGAAACAGGATTTTATTTTAACTAC
TCAAGGTTTGTAATTTTTCAAACAAATAAAAAAAGTGCACTATTTCTGCC
TATTCTTTTTAAAAGCAACGTAAAAAACCTTTATAATGTTTTAGAATACG
CTAAAAAAGGAGAAGGAGATGAAAAAGAAAAACTAATGGAAGAAATAGCA
AAGATCAGATTCGAAGTTGCAATGAGAAGTGCCATGATTGGTAAATTTGC
TGGTATGTATGCAACGCCCTACTGGGTACGGGTTTTGCAACAACTGTGCG
GTAATAGTTACTAATAGAGCTTTTACTCGTTTTCAGTCTATATTTTCGCC
AAAACTTTACCAGTGACGTCTTTGATGTAAAATAAATATGTCTCTCTTTT
TGTTTGAACAAAATTCAATGGCATAAATTGAATAAATTGTCTTTAACTTT
CGTTTTTCATTATTAGCATCGAGTAAACAAAGAACAAAGCTTAGACGTAA
AAATACTAACGACAACGAAAAAGCCGATAAACTTGAGGCGAAGTTGAAAG
AAATCTTTGGAAACAGTGACAGTTGGAAAAAACACTTAGAGGAGACAGAA
CGTAAACTTGGTATGTTATTTCACAAAACGTATTTTGTCCAGCAACTTTA
TTTTCCTTTTGATCAGCTCTAACTTGAATACTGAAGTTTTCTCAGAATCT
TTCAGAACATGATATTGTATTTTTAGAAATCCGGAAAAAGTCAAAACAAA
CGATTGACGATGGCATGTTGTACCAGAGGCACTTAGAAGAGAAAAAGCTT
TTAGTCGAAGAAATGAAAAATTTTACTAGCCACTACAAAAAGAAACTTAT
GTCCCTGAAAACTGGTTCGTAATTTTGCTTTAGATATAGCACAAAAATTG
CAGAATCACCTACACGAGTAGTAGAAAGTTTATGCGCGTGTATACTTTTT
AGTATTACAATAAGAAAACAGCAAAGGGTATTGTCTCAGTGGAATGACTT
TGAAAAAAGAGGTGAACGTGAACCTGTGCTTTTTACGTTTCCATGGTAAC
CCATAGTGGGTATCCCAGTAGGAATTTTTGGGGAGGTGTTAAACTTTTTG
CTGGCGGTTAGAGGTTTTTATATTTTTCTCAATAGAATTTCTATTGTTCT
TTTTGTTAAGGGAGCTTCTGACCTCTCTGCCCACTAAGTTGCTTTGTAGA
TTTGAAATAAAGATTCATTTTAACTACAACCACCATTGTTTTACCACTGA
CTTCAAAATGATAAATGAAATTATTTTGAAAATATTTGATTTGACCAATA
TCACTACCTGTAATAATAAGAACGTTTTTCTCGTTTTTTAAAGGAAAAAG
TTGCGCTTTGGCTTCAAATTACACTTCTGATATACACGACAAGCCAACGC
TGGAAATGCAACACGATGTAAGAGTTTATGAACTATTTTCACCAAACTTA
ATTTATATCTTTTATATTTTCTGTCTAAGATTCGTACAGTGTAAACTTCA
GGGAATTTTTTGAACGATTTTTACATTAACATATGTTTTATATATTTTTT
CAATGAATGTTGAAGGTAACAAACCTACATTTTTCTTTCAGACCTTGATG
GAAGAAGGGGAACAAAATTTGAGAAGGAAAGCTATTGACTTGTGTTCGCA
GCAACTATCAATCGGAATCGAACTCTTCAGCAAAGTTGTTACAAATGATT
TTTCGGAAATTCCAGACGAAGAGAACGAAAGTGAATTTCCCAAATCTGAC
CATGAAACCAGCGACACGAGTAGTGATGAAATAGACGAACACAACGAATC
GTGACTTTAATTTGTACACGCCTTTTTATAAGAAAAGTGTACTTTGGATG
AGGGTCAAGTGTTCTTAAGAAATTGCCAAAATTGAGGGTGAAATATTCTT
AACGTATTCTTAATTCTTTAGACTTGTTTTGGACTTTGAGCTAAAATTAC
ATTTCTGCCTAAAAGTTTAAAAAACTAAGGAAGTAGTTTTCTCAATTAAC
CAAACACAAAATGACTGTATTCTTATCAAATTCTGTGAACTCACCCTAGA
GGTTACTCTTAGGGTATTCTTACAATTTTTCCAATTTTCACCCTGATATT
Ctgatagaagatattcttacaaaaaaaagcgtgtatgaaaatgaaaatgc
ttacGTTTATTCAACTCACATAATACAACAGTACTTTAATTACAAATTAT
GAAGAGTAAGAATTGAAAACTTGATTTGGCTATTATGATGTTATTTTATC
TTTGAATATCAATAaaattatgatatatttttaAGACATTATTTATCAAA
GTagagtttatttatttttatgtcTTCCATAATCTAGGGCGTCTTTCTTG
CGACTAAACATTATACAGTCTAAGTATTACCAACCGAATCAAACTTCCGA
ACGTCATATCTCAGTATTCTGATTTCGAGGGTtatatttacaatttagaa
TTCCTCATTCTGTACGATGATAGTCCTTATCCTCGTATTTATTCGAGTTG
TTagatatttatatattttatacacaCATCATATACTTTATATCAACACT
TTTCTTGTAAGAAAAACCAATATTTTTGGAGATTAAAGAAACAATGTTAA
GAAAaaatattatgctgatataagcacaATAAACCTTTTCAAATCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023425XLOC_023425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038965-exon-sc0001978-1491911889:25695..26138TCONS_00038965-exon-sc0001978-1491911889:25695..26138Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:25695..26138TCONS_00038965-exon-sc0001978-1510915933:25695..26138Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:25695..26138TCONS_00038965-exon-sc0001978-1575043694:25695..26138Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:26532..26864TCONS_00038965-exon-sc0001978-1491911889:26532..26864Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:26532..26864TCONS_00038965-exon-sc0001978-1510915933:26532..26864Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:26532..26864TCONS_00038965-exon-sc0001978-1575043694:26532..26864Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:27113..27230TCONS_00038965-exon-sc0001978-1491911889:27113..27230Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:27113..27230TCONS_00038965-exon-sc0001978-1510915933:27113..27230Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:27113..27230TCONS_00038965-exon-sc0001978-1575043694:27113..27230Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:27353..27444TCONS_00038965-exon-sc0001978-1491911889:27353..27444Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:27353..27444TCONS_00038965-exon-sc0001978-1510915933:27353..27444Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:27353..27444TCONS_00038965-exon-sc0001978-1575043694:27353..27444Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:27612..27699TCONS_00038965-exon-sc0001978-1491911889:27612..27699Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:27612..27699TCONS_00038965-exon-sc0001978-1510915933:27612..27699Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:27612..27699TCONS_00038965-exon-sc0001978-1575043694:27612..27699Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:27789..27896TCONS_00038965-exon-sc0001978-1491911889:27789..27896Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:27789..27896TCONS_00038965-exon-sc0001978-1510915933:27789..27896Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:27789..27896TCONS_00038965-exon-sc0001978-1575043694:27789..27896Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:28111..28254TCONS_00038965-exon-sc0001978-1491911889:28111..28254Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:28111..28254TCONS_00038965-exon-sc0001978-1510915933:28111..28254Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:28111..28254TCONS_00038965-exon-sc0001978-1575043694:28111..28254Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:28371..28508TCONS_00038965-exon-sc0001978-1491911889:28371..28508Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:28371..28508TCONS_00038965-exon-sc0001978-1510915933:28371..28508Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:28371..28508TCONS_00038965-exon-sc0001978-1575043694:28371..28508Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:28988..29061TCONS_00038965-exon-sc0001978-1491911889:28988..29061Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:28988..29061TCONS_00038965-exon-sc0001978-1510915933:28988..29061Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:28988..29061TCONS_00038965-exon-sc0001978-1575043694:28988..29061Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1491911889:29236..30292TCONS_00038965-exon-sc0001978-1491911889:29236..30292Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1510915933:29236..30292TCONS_00038965-exon-sc0001978-1510915933:29236..30292Clytia hemisphaericaexon
TCONS_00038965-exon-sc0001978-1575043694:29236..30292TCONS_00038965-exon-sc0001978-1575043694:29236..30292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001978supercontigsc0001978:25695..30292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.892176	6.32339e-09	3.47192e-05	0.18229	0	2.71302e-06	0	9.97035e-08	1.92651	0.483467	0.669895	2.1374	0	0.636247	1.27857	0.270019	0.95421	0	1.25568	3.36205	3.88331	4.68998	0	0	0	0	3.36152e-10	1.51867	1.15311	1.66234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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