|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038931 ID=TCONS_00038931|Name=TCONS_00038931|organism=Clytia hemisphaerica|type=transcript|length=2088bp
cataaatcacgTCACGAACAACACTTACctcgttttgaaaatattgccat
ggtgattaactcccagtggTTTTATTAAAACTTTTACTATTAAAACtatt
ctattcataaaaaaatcatttcatgtgtcaagggacataatcaccatggt
aattgtttggaCACGAGGCAAGTTATGTTAGTGGAAAAACAttcaatgaa
ttaaaaaaacgaaaaagttaaaattttattagATTGTTCATTTCGATATT
TTGGATTAAATTTCTAATGCTTTATGATCACAAGATTTCATAGGCACAAA
TTCTTACTTCGGTCTTTTTGTATCTTCCAAGGTTTTGATCACCCAGTTTA
TCATATTTGTGGGTCAAAAGACTTTTGGCTAGTTTCCAGGTTCCATTCGC
TTCTAATTCATCCATTCTCTTTTGATATCCATAATCTCTCAAGTAATGAT
CTCGGGTGGAAAAGATAATGATGGAACCACGCCCCTTCGCCGCCATTATC
ATTTCGTCAAAGAGTTTCTTGTCACAATTCCCTTCAACCAAAACTCCACA
ACATACAACAAGCTGGAATCTGTTCCGAAGATATTTGGGAAATGTTTCCA
GTTTTCCAAGCTAAAGCTCGATAGTCTGCTTGTAGGATTCTTTAGCTTTT
GCTTTGGCCATCATTTCAACGGAAGCATCAACACCAAAGATGTTCTTGAA
TCCTCCAACCTTCAAAAGTTGATCTCCTCCAAGCCAAGTTCCACAGCCCA
TGTCCAGAACTTCAATCACCTCTTTTGTCGCTAGATCCGGGATAAGCTCA
CACCAAAGACTTATAACCAAAACAAGACGTCTAACCATTGTTTCACCTTA
GTTAGATCTCATCAGATAgcgtgttattgtttttctaataCAATAACTAT
ATCTACAGGGTTTCCGCATAATTAGTGAACGAAAACAATCAATTTTGCCG
CGTcagcaataaaaacaattgttttgccgagtcagcaaaaaaatcaatat
tactaatttctcagaattttcgtcgaaattttcaaaatggctgaagcaga
aaaactttgatttgaaaattagaAACTCTGACTTCGTTCTAATCTGTGAA
AATGTTTACTGGCAATCAAATCATCTTCGTAACAGAAAGATTGAAGTTTT
ATGATATGGGCTCCTCTCCTCAAGTGCTAAAGGAAAACCGATAGCCTGAT
ATATCAAACTGCCTTCATATCTAACAGTTTTGATCGTCAACACTTTAGGa
cacttttaaacttttgaggACGACCTGGCTGGCCTACAGTACCAAAAGAA
AGATGAGTTAAAGAACTAATATGTTGTAAATGTTTTGAttatcatttatt
tatatgGCTGATCacttttctacttttctttGGTGTTTGCAAAACTTGCA
GATATATGActctaaaaaggctgatttcatAAATGGTGGAATGATTAACC
CAATCTTATTCATACTCTTGACATTCAATTAAATTGATTGGAAACTTGAG
aacatttttggtattttgaatgACATAGTACATATATACAAGATGTTGAT
TGACTATTTTAATATACCTATATGTGTTAATATCGATATTGGAATGAAGA
AATAATAATCGTGGTAGTAGACACTCAACTAGAGGGAATCGTGATATTTT
ACGATGGACTTGGATGATATTTTTACatacaaacatttttaaaactCTAT
TTCACTAAAACTATATCTACGATATAAAACTGTACTTTTGGGAACCTAAT
AAGCTTCCCCCTCCCCCGTCTGCCCCcgctaataaataaattctcctatc
tggcttattccaaacccccatttatttaggtacccaagagtagttAGAAC
CTTTTATGGAccttattttattaaaagttaattaattaaaatttttcttt
taaacaaagataCTATCCAGTGTATAagtttttttattctaaaaattttc
gataatcatattgttttgaaaagatagaaTCAATGTCTGGGTCAAAGGCT
gataattgaattgaaaaattaaagaattttttttcactcaattttcaata
ttttgatccAAACTTTTGAGGAGATTctgacataaaat Run BLAST on NCBI transcript from alignment at sc0001969:25213..27300+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038931 ID=TCONS_00038931|Name=TCONS_00038931|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at sc0001969:25213..27300+ (Clytia hemisphaerica)
cataaatcacgTCACGAACAACACTTACctcgttttgaaaatattgccat
ggtgattaactcccagtggTTTTATTAAAACTTTTACTATTAAAACtatt
ctattcataaaaaaatcatttcatgtgtcaagggacataatcaccatggt
aattgtttggaCACGAGGCAAGTTATGTTAGTGGAAAAACAttcaatgaa
ttaaaaaaacgaaaaagttaaaattttattagATTGTTCATTTCGATATT
TTGGATTAAATTTCTAATGCTTTATGATCACAAGATTTCATAGGCACAAA
TTCTTACTTCGGTCTTTTTGTATCTTCCAAGGTTTTGATCACCCAGTTTA
TCATATTTGTGGGTCAAAAGACTTTTGGCTAGTTTCCAGGTTCCATTCGC
TTCTAATTCATCCATTCTCTTTTGATATCCATAATCTCTCAAGTAATGAT
CTCGGGTGGAAAAGATAATGATGGAACCACGCCCCTTCGCCGCCATTATC
ATTTCGTCAAAGAGTTTCTTGTCACAATTCCCTTCAACCAAAACTCCACA
ACATACAACAAGCTGGAATCTGTTCCGAAGATATTTGGGAAATGTTTCCA
GTTTTCCAAGCTAAAGCTCGATAGTCTGCTTGTAGGATTCTTTAGCTTTT
GCTTTGGCCATCATTTCAACGGAAGCATCAACACCAAAGATGTTCTTGAA
TCCTCCAACCTTCAAAAGTTGATCTCCTCCAAGCCAAGTTCCACAGCCCA
TGTCCAGAACTTCAATCACCTCTTTTGTCGCTAGATCCGGGATAAGCTCA
CACCAAAGACTTATAACCAAAACAAGACGTCTAACCATTGTTTCACCTTA
GTTAGATCTCATCAGATAgcgtgttattgtttttctaataCAATAACTAT
ATCTACAGGGTTTCCGCATAATTAGTGAACGAAAACAATCAATTTTGCCG
CGTcagcaataaaaacaattgttttgccgagtcagcaaaaaaatcaatat
tactaatttctcagaattttcgtcgaaattttcaaaatggctgaagcaga
aaaactttgatttgaaaattagaAACTCTGACTTCGTTCTAATCTGTGAA
AATGTTTACTGGCAATCAAATCATCTTCGTAACAGAAAGATTGAAGTTTT
ATGATATGGGCTCCTCTCCTCAAGTGCTAAAGGAAAACCGATAGCCTGAT
ATATCAAACTGCCTTCATATCTAACAGTTTTGATCGTCAACACTTTAGGa
cacttttaaacttttgaggACGACCTGGCTGGCCTACAGTACCAAAAGAA
AGATGAGTTAAAGAACTAATATGTTGTAAATGTTTTGAttatcatttatt
tatatgGCTGATCacttttctacttttctttGGTGTTTGCAAAACTTGCA
GATATATGActctaaaaaggctgatttcatAAATGGTGGAATGATTAACC
CAATCTTATTCATACTCTTGACATTCAATTAAATTGATTGGAAACTTGAG
aacatttttggtattttgaatgACATAGTACATATATACAAGATGTTGAT
TGACTATTTTAATATACCTATATGTGTTAATATCGATATTGGAATGAAGA
AATAATAATCGTGGTAGTAGACACTCAACTAGAGGGAATCGTGATATTTT
ACGATGGACTTGGATGATATTTTTACatacaaacatttttaaaactCTAT
TTCACTAAAACTATATCTACGATATAAAACTGTACTTTTGGGAACCTAAT
AAGCTTCCCCCTCCCCCGTCTGCCCCcgctaataaataaattctcctatc
tggcttattccaaacccccatttatttaggtacccaagagtagttAGAAC
CTTTTATGGAccttattttattaaaagttaattaattaaaatttttcttt
taaacaaagataCTATCCAGTGTATAagtttttttattctaaaaattttc
gataatcatattgttttgaaaagatagaaTCAATGTCTGGGTCAAAGGCT
gataattgaattgaaaaattaaagaattttttttcactcaattttcaata
ttttgatccAAACTTTTGAGGAGATTctgacataaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038931-exon-sc0001969-1491911889:25213..27300 | TCONS_00038931-exon-sc0001969-1491911889:25213..27300 | Clytia hemisphaerica | exon |
| TCONS_00038931-exon-sc0001969-1510915933:25213..27300 | TCONS_00038931-exon-sc0001969-1510915933:25213..27300 | Clytia hemisphaerica | exon |
| TCONS_00038931-exon-sc0001969-1575043694:25213..27300 | TCONS_00038931-exon-sc0001969-1575043694:25213..27300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001969 | supercontig | sc0001969:25213..27300 + |
Blast
The following BLAST results are available for this feature:
|
