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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038930 ID=TCONS_00038930|Name=TCONS_00038930|organism=Clytia hemisphaerica|type=transcript|length=2545bp
TAAACTTCAGAACTAATCATTTGGAGAGAGATTTTCCTTAAAATATGATG
CTCAAATTGCTTTTGTTTGGGACTTGTGCCCCTCACAAAATTTCAGTTTT
ACTTCCTCGAAGATCAGAATAGATATTTATGCTTTAAATGTTACAAGTtt
tataccgttgaaaagataagctAAAGACTCTAGGCCGCTAGAGAGTTACC
AAACTGTTTTTTGctgcttatttttttcacttcaacaAACAGACGGGTAC
CATTTGAACTTACAATGCGAAAATTATTTGGAAAAGATAACGAATaaaag
accttttcataaatcacgTCACGAACAACACTTACctcgttttgaaaata
ttgccatggtgattaactcccagtggTTTTATTAAAACTTTTACTATTAA
AACtattctattcataaaaaaatcatttcatgtgtcaagggacataatca
ccatggtaattgtttggaCACGAGGCAAGTTATGTTAGTGGAAAAACATt
caatagtgaggttaagtaaatcggtaaaatcacgacgacgaacgaaaatt
taacaggctagtgagtttcaaccaatcaaatttcgtttttccactagcct
attacatttttcgtccgtcgtcgtgattatcccggtatacttaacctcac
taatgaattaaaaaaacgaaaaagttaaaattttattagATTGTTCATTT
CGAtattttggtttgaatttctAATGCTTTATGATCACAAGATTTCATAG
GCACAAATTCTTACTTCGGTCTTTTTGTATCTTCCAAGGTTTTGATCACC
CAGTTTATCATATTTGTGGGTCAAAAGACTTTTGGCTAGTTTCCAGGTTC
CATTCGCTTCTAATTCATCCATTCTCTTTTGATATCCATAATCTCTCAAG
TAATGATCTCGGGTGGAAAAGATAATGATGGAACCACGCCCCTTCGCCGC
CATTATCATTTCGTCAAAGAGTTTCTTGTCACAATTCCCTTCAACCAAAA
CTCCACAACATACAACAAGCTGGAATCTGTTCCGAAGATATTTGGGAAAT
GTTTCCAGTTTTCCAAGCTAAAGCTCGATAGTCTGCTTGTAGGATTCTTT
AGCTTTTGCTTTGGCCATCATTTCAACGGAAGCATCAACACCAAAGATGT
TCTTGAATCCTCCAACCTTCAAAAGTTGATCTCCTCCAAGCCAAGTTCCA
CAGCCCATGTCCAGAACTTCAATCACCTCTTTTGTCGCTAGATCCGGGAT
AAGCTCACACCAAAGACTTATAACCAAAACAAGACGTCTAACCATTGTTT
CACCTTAGTTAGATCTCATCAGATAgcgtgttattgtttttctaataCAA
TAACTATATCTACAGGGTTTCCGCATAATTAGTGAACGAAAACAATCAAT
TTTGCCGCGTcagcaataaaaacaattgttttgccgagtcagcaaaaaaa
tcaatattactaatttctcagaattttcgtcgaaattttcaaaatggctg
aagcagaaaaactttgatttgaaaattagaAACTCTGACTTCGTTCTAAT
CTGTGAAAATGTTTACTGGCAATCAAATCATCTTCGTAACAGAAAGATTG
AAGTTTTATGATATGGGCTCCTCTCCTCAAGTGCTAAAGGAAAACCGATA
GCCTGATATATCAAACTGCCTTCATATCTAACAGTTTTGATCGTCAACAC
TTTAGGacacttttaaacttttgaggACGACCTGGCTGGCCTACAGTACC
AAAAGAAAGATGAGTTAAAGAACTAATATGTTGTAAATGTTTTGAttatc
atttatttatatgGCTGATCacttttctacttttctttGGTGTTTGCAAA
ACTTGCAGATATATGActctaaaaaggctgatttcatAAATGGTGGAATG
ATTAACCCAATCTTATTCATACTCTTGACATTCAATTAAATTGATTGGAA
ACTTGAGaacatttttggtattttgaatgACATAGTACATATATACAAGA
TGTTGATTGACTATTTTAATATACCTATATGTGTTAATATCGATATTGGA
ATGAAGAAATAATAATCGTGGTAGTAGACACTCAACTAGAGGGAATCGTG
ATATTTTACGATGGACTTGGATGATATTTTTACatacaaacatttttaaa
actCTATTTCACTAAAACTATATCTACGATATAAAACTGTACTTTTGGGA
ACCTAATAAGCTTCCCCCTCCCCCGTCTGCCCCcgctaataaataaattc
tcctatctggcttattccaaacccccatttatttaggtacccaagagtag
ttAGAACCTTTTATGGAccttattttattaaaagttaattaattaaaatt
tttcttttaaacaaagataCTATCCAGTGTATAagtttttttattctaaa
aattttcgataatcatattgttttgaaaagatagaaTCAATGTCTGGGTC
AAAGGCTgataattgaattgaaaaattaaagaattttttttcactcaatt
ttcaatattttgatccAAACTTTTGAGGAGATTctgacataaaat Run BLAST on NCBI transcript from alignment at sc0001969:19846..27300+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038930 ID=TCONS_00038930|Name=TCONS_00038930|organism=Clytia hemisphaerica|type=transcript|length=7455bp|location=Sequence derived from alignment at sc0001969:19846..27300+ (Clytia hemisphaerica)
TAAACTTCAGAACTAATCATTTGGAGAGAGATTTTCCTTAAAATATGATG
CTCAAATTGCTTTTGTTTGGGACTTGTGCCCCTCACAAAATTTCAGTTTT
ACTTCCTCGAAGATCAGAATAGATATTTATGCTTTAAATGTTACAAGTtt
tataccgttgaaaagataagctAAAGACTCTAGGCCGCTAGAGAGTTACC
AAACTGTTTTTTGctgcttatttttttcacttcaacaAACAGACGGGTAC
CATTTGAACTTACAATGCGAAAATTATTTGGAAAAGATAACGAATaaaag
accttttcataaatcacgTCACGAACAACACTTACctcgttttgaaaata
ttgccatggtgattaactcccagtggTTTTATTAAAACTTTTACTATTAA
AACtattctattcataaaaaaatcatttcatgtgtcaagggacataatca
ccatggtaattgtttggaCACGAGGCAAGTTATGTTAGTGGAAAAACATt
caatagtgaggttaagtaaatcggtaaaatcacgacgacgaacgaaaatt
taacaggctagtgagtttcaaccaatcaaatttcgtttttccactagcct
attacatttttcgtccgtcgtcgtgattatcccggtatacttaacctcac
taatgaattaaaaaaacgaaaaagttaaaattttattagATTGTTCATTT
CGAtattttggtttgaatttctAATGCTTTATGATCACAAGATTTCATAG
GCACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGATCATGATAACCAATTGTTAAGTACATCTCTTCGT
AACTTTCAGCCTCCGCATTGTAATGTTCCACAATATCCTTGGCATAAGGT
TGAACCTTCCCTGACCATTGAGTCGTACGTTCTACAGCTGCTTTAACTGT
CTCGTTCACTTTGGTAACATCGATGATTTCAACTGTTTGCGCCATCTTTC
CTCTGCTCTTTATTGTTATAATCTAGAacgaaaaaaggttttttaagtTG
ATGTCAGTTCCGCAAGTTGCATAGTTCTGCAGCGCTGCAATATTCCGTAA
AGTTGCGTTTTTTTCGCAACGCTTCAACCGGGATGCGCTACACTATTCTA
CGCAATTTGCCAACCGGGATGCGCTACATGATGGTTTGATATTCTGTGGA
TAAATGAAAGctcaaaaagaaattaataaGTTTTCCACGAGATGATACAT
ATCTTATTTTCATAACCTTTCACCTTTTCTTTGTCTTTATATAGAATACA
AAGGATGAAATCAATAAGTAGTGCCACGTATAGACTTATGATTATGTTTA
GTTTCGAGAATTTTGGGCCACGTCAGTTTCTTAAGATATCTAACTTCAAT
TTTAAAGCTTTGGTATATTGTCCGTTTGTTCCAAACGAAACTAACTTTTA
CTTAATAATAATGATTTTATGACAAAATGGTTAGATAAAATTTATTCAAT
ACgttgtcttttattttttggtaTTAATCCATTTTCTAATACGTCCGAAA
CTCTCTCTCCATTTTTACATTCAAACCAATGAACTTGCGGTTGCCTTATA
AACATTCTGTTATAACCACTTTCAACGGTCATTCGAGCATTGTCTGTAGT
TAACGAATTTATTGGGTCACACATAATAAGTTTTCTTCTAGACGGTCCTC
CATGTAAGTCTTTGTTAACAGCGGTATAAGCTCTGTTATCCATTTTATCT
CTTTCAGTAGCATTAAGAGAAGGCTCAATTTCATAAATTCCAATTTCGTA
TTCAAATTTAACTTCAAATCTGACAAACATGTTACGTAACGTAGTACCAT
TATATTTTGGTTGAAACTTAAAATAGATTGGACGCATAGCTTTTTCTGAC
GAGAACGGTTGTTCTTTATACCACCATCTTTTTGTTGATCCAGGACCAGG
CCATTGTTTTGGATCAGCCCAATCTTCTTTAGCATATAGTCCAGCGTGTT
CTACATACGGACTCCAATCTTGTTTTGATAATAATCGATAAGGTGTTTGA
GTTGTATAAGCAGATACATTACTTGGTATATATTGATGTaactcattttc
tttatttcgtTGATCTGTAACGGGTTTAAAACCAGGCCACCGTTCGTCTG
CCTCTGTTATAGTACCCGAAGCAAACCATGTGTTATCACCGGCGACAATT
TCATCATTTGTTTCCGGGTCAAAGTTTTCTTCCCAACCTCCTATTTCAGA
ATTTGGATGAACTAAAACACCGGCCGAATAATCAAGAGGATTAATAACAT
AAGCTTTTCCGTGCATACGTTGCCATTTGTCTATTTCTGGATGGGTAACT
TGATATTTATTTGCAGTATTAACAGTTTTCTTTGGCTTTTGAAGGTCATA
TTTGATAAGTTGTTCGACAGGGGACCATAATTCATTCATTGACCGTAATA
GTCTGCTATCGTTTGTCCATTGGGTAGCACAACACGGTTCTTCAGGTTTA
TTAAACATTTCTTTCCAATCAGCAGAGGTAAACTTCCAAGACAAATCATC
ATAAACGAGGTCCGGTCCAACATTTTTAGCATAGCGGCCATTAACAAATA
ATTCTTTTGCTTTTTCAATTTCGGGAAATACGTCTTTAGTATATACATTT
CGTTCTGTATTAGACCGAGCCAGTTTACAAAGTTCTACTTCATTTTTATC
ATCGTCGTTTGAACATACATTTAAACTATATGTCGGTGTTAAGTAATTTC
TGTGATCCACAGGATCCCATACAAAGAATGTTTCATTTCCAACTTCTCTG
CCTACGTCTACTCCTGCCCCTGTTTCAATTTGAGTAACTTGGATATCATC
AATAACAACACTAGCTCGTATTGGATACCatgcttttcctttttttgttt
catcttTGATTACACTTTCGCCAATTGGTAATTTCATATCTTGCCAGTGT
ATACCAAATATGTTTTCGCCATCTTTATTGTCGGCAATTTTATGTTGTGC
TAATATAGTTCGTTTAAATAGAATTTTACGAAATCCTGATTCAGGTTCTG
GTGAATTGATTTGGTCAGGGACCGCGATATCTTCCGGTTCAGTGATCATC
TTCTTCTAAATGTGCTTCGTCCATAGCACGTCTTAACTCTGCTTTAACAT
CGTTCGCAAATGGGACTAACTGTGTATCAATCATAGTTTttatatcttgt
attttttgATATAATGGAATAATTGCACCATTGTAAAAGTTTTCAATAGT
TTCTTTCTCAATAACATAATGTCTTACGGGATCAGGCATTGTTGAACCGC
TTGAGTCTGTTTCACCGTACGAACTGTTACTCGTATCGGGTTCTTCGTTT
ATGCTTTCTCCACTCGTCTGCGTCGAATTCGCTGGGGAAGAATTCTCCGG
GGGCTCCTCGTTCTCGGGTTGttgtagcccggggtccacttagagctttt
ttatggtctttttggcgctgataagtggcccggtagtatatggtaatatg
cttttgcttaggcggactgtaaaacagtccgccagatttttgttgttttt
ggaaggtaaaaatagtacgaagcaatgtttttatttgagaatagggcatt
gcaaatctgttattgctGTTTGTTTCACATTTTTGATTACATCTTTCAAC
TCttagtagtttttttgttatttggatttcaaacattttctttcaaaatg
gcgaccttgccaaacgctcctagtctacttcactggactcagcgtcataa
aaaattatcaaaaagcaaagttcagccagaagtagactctagtctagggT
TGTTGTTGCAACGGTTGATCCCTTGGTGGCATAGGTAACCCGGTATGAGT
CGTCCAAGTTCCCCGTTTTGcctttttgtaatattttttgtccGCTGGAT
GGTAAAAGTGCATCCCCCGCGTCCGTCGCGATCTGGTTGCCATATTCTTT
AACTAACGTCTTGGACTTGTAACCAACAGTTGTGATATgagtttttaaat
gttttcgagaACCATTACCGCTAGGTTTAAATAAGTTATTTACTAACTCT
GATTGAACCGGTTGTTTCTTTCCCAATTGTTGATAATTTCATTTGTTGTA
TGACTAAAGTCTTTTATATTTTCCCTcataaaattacttttttttaacaa
tGGTTCATTGTCTGCTGCtgtctttttatatatttccttTAATTCTATTC
TTTGTTGCTTtgtcatgttttttttaaaattatatctcTTTTTTGCTTTA
CGAAAGTCTAATGTTCCTTTAATGGTTGCTCGAATATTCCCTGCAGTTTT
GAGTGACGTAGCCGCTATTTTTACTGGTGCTTTTACTAATGATTTCGTTT
TCCCCCCAGATATTACTGACCAAAATGCTGAGTCAGCATAATCCAATTTG
TTGGCGGTGTCCGGGTCTCCGTCAGGGTTGATCACGTGCTTTGGTATAAA
CATAAAACGATTGTTGTCCACGCCTTGTAATCCTTGACCAAATATGGGTT
TTCCAAACTTATCTACAGTACCGAGTTGTTTTCCGTTACGGTCCTTTCTG
TCCGGTCCAAATACATCTTCTGCTTTATTGTCCATCTTTTGATTGACGAT
ATTTCTAAATTGCTTGTTCTTCTTGTAAATTgtgtttaattttttaaatg
aaccACCATACATTTTGGCTGAAGCGCCAAGTACGCTTGATGTTGACAGT
AGGTTACCCATTTTGCAAATGATGAATATTATAAAAATTGGGATATATAT
GGGAGCTAAGTAGGTGACGCAAGTACCTAAGATGACGATATTACCGACCC
CGGCCCGTACCCGACTCGTTACCGGAACCCGTACGGTATTACAATAATTC
TATGAGATCTCATAGTATAATTGTAATACCGTACGGGTTCCGGtaacctt
ttcataaatcacgTCACGAACAACACTTATCTCGTTTTGAAATNAGATAA
CGAATaaaagaccttttcataaatcacgTCACGAACAACACTTACctcgt
tttgaaaatattgccatggtgattaactcccagtggTTTTATTAAAACTT
TTACTATTAAAACtattctattcataaaaaaatcatttcatgtgtcaagg
gacataatcaccatggtaattgtttggaCACGAGGCAAGTTATGTTAGTG
GAAAAACAttcaatgaattaaaaaaacgaaaaagttaaaattttattagA
TTGTTCATTTCGATATTTTGGATTAAATTTCTAATGCTTTATGATCACAA
GATTTCATAGGCACAAATTCTTACTTCGGTCTTTTTGTATCTTCCAAGGT
TTTGATCACCCAGTTTATCATATTTGTGGGTCAAAAGACTTTTGGCTAGT
TTCCAGGTTCCATTCGCTTCTAATTCATCCATTCTCTTTTGATATCCATA
ATCTCTCAAGTAATGATCTCGGGTGGAAAAGATAATGATGGAACCACGCC
CCTTCGCCGCCATTATCATTTCGTCAAAGAGTTTCTTGTCACAATTCCCT
TCAACCAAAACTCCACAACATACAACAAGCTGGAATCTGTTCCGAAGATA
TTTGGGAAATGTTTCCAGTTTTCCAAGCTAAAGCTCGATAGTCTGCTTGT
AGGATTCTTTAGCTTTTGCTTTGGCCATCATTTCAACGGAAGCATCAACA
CCAAAGATGTTCTTGAATCCTCCAACCTTCAAAAGTTGATCTCCTCCAAG
CCAAGTTCCACAGCCCATGTCCAGAACTTCAATCACCTCTTTTGTCGCTA
GATCCGGGATAAGCTCACACCAAAGACTTATAACCAAAACAAGACGTCTA
ACCATTGTTTCACCTTAGTTAGATCTCATCAGATAgcgtgttattgtttt
tctaataCAATAACTATATCTACAGGGTTTCCGCATAATTAGTGAACGAA
AACAATCAATTTTGCCGCGTcagcaataaaaacaattgttttgccgagtc
agcaaaaaaatcaatattactaatttctcagaattttcgtcgaaattttc
aaaatggctgaagcagaaaaactttgatttgaaaattagaAACTCTGACT
TCGTTCTAATCTGTGAAAATGTTTACTGGCAATCAAATCATCTTCGTAAC
AGAAAGATTGAAGTTTTATGATATGGGCTCCTCTCCTCAAGTGCTAAAGG
AAAACCGATAGCCTGATATATCAAACTGCCTTCATATCTAACAGTTTTGA
TCGTCAACACTTTAGGacacttttaaacttttgaggACGACCTGGCTGGC
CTACAGTACCAAAAGAAAGATGAGTTAAAGAACTAATATGTTGTAAATGT
TTTGAttatcatttatttatatgGCTGATCacttttctacttttctttGG
TGTTTGCAAAACTTGCAGATATATGActctaaaaaggctgatttcatAAA
TGGTGGAATGATTAACCCAATCTTATTCATACTCTTGACATTCAATTAAA
TTGATTGGAAACTTGAGaacatttttggtattttgaatgACATAGTACAT
ATATACAAGATGTTGATTGACTATTTTAATATACCTATATGTGTTAATAT
CGATATTGGAATGAAGAAATAATAATCGTGGTAGTAGACACTCAACTAGA
GGGAATCGTGATATTTTACGATGGACTTGGATGATATTTTTACatacaaa
catttttaaaactCTATTTCACTAAAACTATATCTACGATATAAAACTGT
ACTTTTGGGAACCTAATAAGCTTCCCCCTCCCCCGTCTGCCCCcgctaat
aaataaattctcctatctggcttattccaaacccccatttatttaggtac
ccaagagtagttAGAACCTTTTATGGAccttattttattaaaagttaatt
aattaaaatttttcttttaaacaaagataCTATCCAGTGTATAagttttt
ttattctaaaaattttcgataatcatattgttttgaaaagatagaaTCAA
TGTCTGGGTCAAAGGCTgataattgaattgaaaaattaaagaattttttt
tcactcaattttcaatattttgatccAAACTTTTGAGGAGATTctgacat
aaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038930-exon-sc0001969-1491911889:19846..20595 | TCONS_00038930-exon-sc0001969-1491911889:19846..20595 | Clytia hemisphaerica | exon |
| TCONS_00038930-exon-sc0001969-1510915933:19846..20595 | TCONS_00038930-exon-sc0001969-1510915933:19846..20595 | Clytia hemisphaerica | exon |
| TCONS_00038930-exon-sc0001969-1575043694:19846..20595 | TCONS_00038930-exon-sc0001969-1575043694:19846..20595 | Clytia hemisphaerica | exon |
| TCONS_00038930-exon-sc0001969-1491911889:25506..27300 | TCONS_00038930-exon-sc0001969-1491911889:25506..27300 | Clytia hemisphaerica | exon |
| TCONS_00038930-exon-sc0001969-1510915933:25506..27300 | TCONS_00038930-exon-sc0001969-1510915933:25506..27300 | Clytia hemisphaerica | exon |
| TCONS_00038930-exon-sc0001969-1575043694:25506..27300 | TCONS_00038930-exon-sc0001969-1575043694:25506..27300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001969 | supercontig | sc0001969:19846..27300 + |
Blast
The following BLAST results are available for this feature:
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