TCONS_00038929 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038929
Unique Name	TCONS_00038929
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	701

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001969:11331..21358+

transcript sequence

>TCONS_00038929 ID=TCONS_00038929|Name=TCONS_00038929|organism=Clytia hemisphaerica|type=transcript|length=701bp
GATATCCATAATCTCTCAAGTAATGATCTCGGGTGGAAAAGATAATGATG
GTACCACGCCCCTTCGCCCTTATTATCATTTTGTCAAAGAGTTTCTTGTC
ACAATGCCCTTCAACCAAAACTCCACAACATACAACAAGCTGGAATCTGT
TCCGAAGATATTTGGGAAATGTTTCCGGTTTTCCAAGCCAAAGCTCGATA
GTCTGCTTGTAGGATTCCTTAGCTTTTGCTTTGGCCATCATTTCAACGGA
AGCATCAACACCAAAGATGTTCTTGAATCCTCCAACCTTGAAAAGTTGAT
TTCCTCCAAGCCCAGTTCCACAGCCCATGTCCAGAACTTCAATCACCTCT
TTTGTCGCTTGATCCGGGATAAGCTCACACGCGATCTCATTAACTTTCTC
ATGATCATGATAACCAATTGTTAAGTACATCTCTTCGTAACTTTCAGCCT
CCGCATTGTAATGTTCCACAATATCCTTGGCATAAGGTTGAACCTTCCCT
GACCATTGAGTCGTACGTTCTACAGCTGCTTTAACTGTCTCGTTCACTTT
GGTAACATCGATGATTTCAACTGTTTGCGCCATCTTTCCTCTGCTCTTTA
TTGTTATAATCTAGAacgaaaaaaggttttttaagtTGATGTCAGTTCCG
CAAGTTGCATAGTTCTGCAGCGCTGCAATATTCCGTAAAGTTGCGTTTTT
T

Run BLAST on NCBI

transcript from alignment at sc0001969:11331..21358+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038929 ID=TCONS_00038929|Name=TCONS_00038929|organism=Clytia hemisphaerica|type=transcript|length=10028bp|location=Sequence derived from alignment at sc0001969:11331..21358+ (Clytia hemisphaerica)
GATATCCATAATCTCTCAAGTAATGATCTCGGGTGGAAAAGATAATGATG
GTACCACGCCCCTTCGCCCTTATTATCATTTTGTCAAAGAGTTTCTTGTC
ACAATGCCCTTCAACCAAAACTCCACAACATACAACAAGCTGGAATCTGT
TCCGAAGATATTTGGGAAATGTTTCCGGTTTTCCAAGCCAAAGCTCGATA
GTCTGCTTGTAGGATTCCTTAGCTTTTGCTTTGGCCATCATTTCAACGGA
AGCATCAACACCAAAGATGTTCTTGAATCCTCCAACCTTGAAAAGTTGAT
TTCCTCCAAGCCCAGTTCCACAGCCCATGTCCAGAACTTCAATCACCTCT
TTTGTCGCTTGATCCGGGATAAGCTCACACGCGATCTCATTAACTTTCTC
ATGATCATGATAACCAATTGTTAAGTACATCTCTTCGTAACTTTCAGCCT
CCGCATTGTAATGTTCCACAATATCCTTGGCNTTATCGTCCGTTTGTTCC
AAACTATACTACTACTTTTTTTGGTAGAAAGATTtatcaatcaacaaaaa
ctttttgttttatccttattaatttcgcctagcgaaagtattacgatcag
CTTCTGTGGTGGCTCGTGGTTTGGtggattttttttgagaaaacgaaagt
acttgatacggttgacgaactcactaaaattgatttacaaattacacgct
cgtataaccatgAACGATTTTCgtaggttttctttggattacgtcatata
tctttgtgtctctagcttcacagtttttgttttttctttattttcttata
agcatatactttataagaatcaaatcaatagctcttgatagacggtgaca
tacctttcggtaattaattcttacaaagtaaataagggacggcgctcaat
atgagcatattcatttttcttataagcatttactttaaaagaatcaaatc
aataactctcgatagacggtagtatacctttcggtaattagttcttacaa
agtaaacaaaggacggtgcacaatatgagcatatttatttttcttacaag
catttactttataagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCg
ttgtttttgtgaaattgtttcatcaaggctcgatgtaaagtagatctcaa
gttcttatttttcccatgcagttcaaattctaggcgaaattttcgacttt
aagtcgtcttgttgtATTTATGATCTGGTCCTACAGTCAAAATTTTAGGT
CTGTAGCACCACTACAGTCGGAATTATGTGAATTCCGATTTGCGGGATCT
AAGAGTAAGAGGGgatttctagggattttgagggatctgagACAATGAAA
GTGCTCTGTTTCAAGAAACCTTATTATAGTTTTCggaaattttcgatttt
agTCTAATTCGTATTAAAACTCgagttataaaaaaaaacgagtcAAAGTT
TCCCCGATTGTTCATACTTCCAGTACCAGATCACCTTGGTTCATCGATGC
GGGGTTTGAACAAACTTGAATCCAGTCCcttatttcacttttttgtgatt
AGGAAGGCGCTCATAAATTGTATCACGTCCAccagtaaaatcaagaaaat
gaaAGTCTAGCGGGTGGCTCTAGGTACGAGACTGGGATTTGAAGCAGAAC
AAAATGCCAAATGAGTGCGGATTTATTTGATATATCTTTTTGCTAATCAA
CTCATGCAATGACATAAACCATTATGAGATCCATCCTCAATCATCTTAAA
TGGAGATGTGACAGGAGTCCGACCAACCTGACCCACTAGCTACTGAGCCT
TTGCCCGATGAAAACTGAGTGTCATCAATTTCAATAATCTCTGCTTCTTG
TTCTTGAGAACCACTTTCTTCCGAATGATCCTTCTCCAAATGTAATTCCG
ATTTCTTTCTCGCTAAAACCGTTCCATGTCGGTTTACATCTGATGAGGGG
AGCTGATTTTGAACATATTTATACGAAGAGATCTGTATTATATTGTCTCG
TTGTAAGTCTAAAGATATTTCACCGCCACTTGCGCTACCCGAGGTCGTTT
CTCCGTCACTTGCGCTACCCGAGGTCGTTTTGCCGTCACTTGCGCTACCC
GAGGTCATTTCACCGCCACTTGCGCTACCCGAGGTCGTTTTGCCGCCACT
TGCGCTACCCGAGGTCGTTTTGCCGTCGTCGGAATCTTCAGTCTTCAGTT
GTCCATCATCATTGCTTGAGAATGGTTTTCGCTGATAAGAAGAAGTTACA
GTTGTTGGTAGACAGTGGTAACAATCTTTGNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNGGGGCGTTTATTTAGCACCTAAGAGT
AAGCTTTTAAACACATCAATGTGGTTGCTCGAAATTACTAGCCTTAGGGA
TCATCGTGATTATAACAGGCGGTCAGAAGAAACACGAAGATCCTTTTAGT
ATCATACCGTACTTACCATTGagtttggatgggaaataagtggcttcatt
tcccatccagaagtcTATAGTAGTATCAAGCCctatagcccttcgggctt
ggactTCAATGCTATTTACGCATAACAATCTAAAATTTTACtaaacaatt
aaataaaaacttttccgcgaaaaaaaattaaatctccGAATTCGAGAGAC
GAACCGAGCTGACTTGCTTTGATTATCTCTTTTTTCAAAGCGAGGGTACC
GGCAGCACTATCcgcatttttgttattttggccCGTTTGATTGTTGAGAC
AGTTGAGGGAACTTTTTGACTTTCAGTgtaatttaaaaagtgaaaagtca
cAGTGAagcataaaaataataaaagaaaacaGCAAAACGAAGGAAGAACG
AGTGGAGGCCCCACTCCCCGACTTGAGTGATAAATTGAGAGGGCCAATTC
TCGGGTTGATTAATAGTAAAACCAACCATGGTTGCCTCGCCTTTAGAACG
ACGGATTCTATCTAGCAATTTCATCGTTTTTAGCTGGCATATTTCAAATC
TAGCGGTATGTTTTACTTTCAATACGACGTTAGTGTGAAAAAACACACGG
ATCACGTATTTTAGATGGGAAATAATTGACTTCTTTTCCCATTCAAGAGT
TCCATCTCTAGCCTAACCTCAAAATATCATGTAATTTTACTATTTCGTTT
TCATTATAGTTGGAAAACATGGTGAAAAAGCGAAGTCGGCGCTCCTTGAA
GAGGGATTGTAAAGCCATGATGTGCATCAAGAGTATTGTCTGTTTTCCTG
AACACACTGTCAAACACTCAATTCAAAAAGCCTCCTCCAAGAAGGCCTgt
cgaaaattgaaagcaaGCGCGCTCAACCAGATAAGAGATGCATTTTTAAA
CGGAGAAGCGATCGGCCATCCAGCGTTTTGGTTGCATTACCTGAAGCTCG
CACTACGCATGATCCATTTCCTGAAAACGTGGAGGAGAGGTTGATAGAAC
AACCAACAGACAGTATGGATGCCATCACTCACATCTTGAGCGTGGCCGCA
CGTTACGGTAGTAAAGTACAAATGTCGAGTAAAGGTACGGATAACGTATT
GGAATTACACTTGAATCAGCCGTCGGCTTCCGGGGAGGAGACTGGCTGAG
AGAAACATTGTTGGGATCAGTGCGTCTCGCACAAACAAAATGACGGAAGT
AACATGACGGAAACAAGTNCGGGAGGAGACTGGCTGAGAGAAACATTGTT
GGCATCAGTGCGTCTCGCACAAACAAAATAACGGAAGTAACATGACGGAA
ACAAGTTGAATGTTTTAAGTTTCGAAGTATGGTATAAGTTAGTGTAATTT
TCTAGTAGGAGCAACATCATTTGCCTCTCAAGGcatcttttatcattttc
tcaGTTGGTCGACCGAAATTGGGCCAAACTTGGTAAGCAATTTTCGAAGC
CCCCTattaaaatctttgtaaaaatgACGCGATCGGAGCGAGCACGCgca
caaattttttcttttgtgctGAATAAAACTGCTCATTTTAAGGCGCAAAA
AAGCAAAAGGGTCGCCGAAATTATTAAACAGAGGCCTTTTTGCACCCATT
CTCTATTGGCACCCCCTCCCAAAATTAATCGGCCTCTTGCGGTGGAGGCA
CGCTACTGGGTAAGTGGTTGCAACAAATCGATAATACGAGGGTTTAAACA
GAACTATGTATTCATTCTGAACAGTAAATCTTCAGGGTATGATAATTAAA
TGATTGTATTACTGTGTACATTGGGATGTTCCattaaaaaccatacaggg
gggtggacgaaccttttcaaaaattattgaaaatgtgtggataccccctg
gaaaatggcaaaatttgcaaaaacacccttggaaaaattctcttacacct
taaagtgagggtggaggaggtaaaatcagtcttttacccctggaaatttt
tacccctttggaaaaatgaaaaaacaccccctctcggattaccctctgga
aatgttcgtccaccccccctgtatggatataaaattgaATGACCCATTTG
AACATATCAGAGATGAAATGAACCCGTTGACTCggctttttcatcttcat
tcaaCAGATGAAAAGATGCCTAAATATTTATAGatctgaaaaaatttgaa
tttttattctgtaaatatatttatttcaaatatcaatattttattattct
AAAGATAAATGGTCCACGGATCCATGATAAGAATAATTTTCGTGTAGCTT
TGGTATTATGGTGagggttttttttcaaaaggtcaAATTTGATAGTCAAG
TTTTCGTCGTTTATATTTTTGCAATGTGTATTTCTCTGTTAATACAAGAA
TCATACGGGACTGGCTTCTCAAAAGTAGAAAGgaattttggaaatatttt
acaAGCTTGTTTTGTATTCTTCTTCAAATTTCATTAAGTTTGTTTCTATT
GGGTTTGAAAATAAGGAAGGCGtcgtgaaagaaaaaaatcactgtaTCCC
TAATGAGTGACTGCGAAGAATTCTCTCCCGTCTCtcaaaagaaagagttt
tttcttctttgttcaTTTTGGGGACTTGGTGTTTTTCCCTCctcctttca
aaacaaaactctAGGCCCTACTtataaaatgataattttcaatgtaaaaa
aaatgtagaaaatggCCTTCTAAATTACTTTATTATGCTCGGGCTGTAAA
GATTTTGGAAAAGAAGTTGACCGTGTAATTTTCCATGGATGGGGGAGTGA
CGAATTTTGATCACATTTTCATTTCATGGAAAATTACTTTGGGTGAAAGT
TTTTTTCCCTTGATTTTGTTGTTTGATTACACTTACATGgcatcacattt
tcaaaaactgcaaCACGAAATTACGTAATTGCAAACCACAGAGTTTGAAC
AACTCTCATTTTTTTTGacgattacacgttttttttttataagaacaaac
tatataagaacataaggcttcaNGCAAACCACAGACTTTGAACAATCAGA
ATATCGCATTAATAGTCgcattttgagagattttatgattttggttTCAA
GAGATGAATGTAGAAGTCAATGTCTACCTTCAAGCTGAATAATCAGTGAT
ATTTGTAACCTGGTGCTATTGTGAAGTTTTCCCTATCCTTTTTTTATTGG
CCAATCTCACGGTCGAAATgtatcatgggtaatcagGACTTTGCTTCAAT
AACGGTTACCGAAGCggtgattacccatgattccttTCGACCTTGAGATG
GCCTTCAACTGAGAGCTAAAACCACTTTGGTATGAAAGCTTTGTAGAAAT
TCAGTTTGTCTCCTTGAGGCTTTTAAATGTTGTATTTCTGTCGTCCTAAG
TGATGTAATTTAATACCGTTTGTTAAATCTGACTCTTAAGAGCAATTTAT
TAGTTCTTGTGTCTATGGCAACCAGATGAAATGCTAATATTACTTAAGAA
CACGTCTTACGATAATAAAACTGCAGTTGTATATTTAAAActggaaaatg
caaaatacCACAGCCTAAACTTCAGAACTAATCATTTGGAGAGAGATTTT
CCTTAAAATATGATGCTCAAATTGCTTTTGTTTGGGACTTGTGCCCCTCA
CAAAATTTCAGTTTTACTTCCTCGAAGATCAGAATAGATATTTATGCTTT
AAATGTTACAAGTtttataccgttgaaaagataagctAAAGACTCTAGGC
CGCTAGAGAGTTACCAAACTGTTTTTTGctgcttatttttttcacttcaa
caAACAGACGGGTACCATTTGAACTTACAATGCGAAAATTATTTGGAAAA
GATAACGAATaaaagaccttttcataaatcacgTCACGAACAACACTTAC
ctcgttttgaaaatattgccatggtgattaactcccagtggTTTTATTAA
AACTTTTACTATTAAAACtattctattcataaaaaaatcatttcatgtgt
caagggacataatcaccatggtaattgtttggaCACGAGGCAAGTTATGT
TAGTGGAAAAACATtcaatagtgaggttaagtaaatcggtaaaatcacga
cgacgaacgaaaatttaacaggctagtgagtttcaaccaatcaaatttcg
tttttccactagcctattacatttttcgtccgtcgtcgtgattatcccgg
tatacttaacctcactaatgaattaaaaaaacgaaaaagttaaaatttta
ttagATTGTTCATTTCGAtattttggtttgaatttctAATGCTTTATGAT
CACAAGATTTCATAGGCACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCATGATAACCAATTGTTA
AGTACATCTCTTCGTAACTTTCAGCCTCCGCATTGTAATGTTCCACAATA
TCCTTGGCATAAGGTTGAACCTTCCCTGACCATTGAGTCGTACGTTCTAC
AGCTGCTTTAACTGTCTCGTTCACTTTGGTAACATCGATGATTTCAACTG
TTTGCGCCATCTTTCCTCTGCTCTTTATTGTTATAATCTAGAacgaaaaa
aggttttttaagtTGATGTCAGTTCCGCAAGTTGCATAGTTCTGCAGCGC
TGCAATATTCCGTAAAGTTGCGTTTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023395	XLOC_023395	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038929-exon-sc0001969-1491911889:11331..11758	TCONS_00038929-exon-sc0001969-1491911889:11331..11758	Clytia hemisphaerica	exon
TCONS_00038929-exon-sc0001969-1510915933:11331..11758	TCONS_00038929-exon-sc0001969-1510915933:11331..11758	Clytia hemisphaerica	exon
TCONS_00038929-exon-sc0001969-1575043694:11331..11758	TCONS_00038929-exon-sc0001969-1575043694:11331..11758	Clytia hemisphaerica	exon
TCONS_00038929-exon-sc0001969-1491911889:21086..21358	TCONS_00038929-exon-sc0001969-1491911889:21086..21358	Clytia hemisphaerica	exon
TCONS_00038929-exon-sc0001969-1510915933:21086..21358	TCONS_00038929-exon-sc0001969-1510915933:21086..21358	Clytia hemisphaerica	exon
TCONS_00038929-exon-sc0001969-1575043694:21086..21358	TCONS_00038929-exon-sc0001969-1575043694:21086..21358	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001969	supercontig	sc0001969:11331..21358 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.838655	0.350668	1.03333	0.886112	3.84079	2.39068	13.5668	7.97259	72.1686	67.68	59.7192	30.8934	16.089	14.5077	34.6417	59.63	18.7731	9.16127	8.5341	8.32889	49.6433	49.8379	97.8941	131.017	85.1907	47.4293	29.8662	20.9457	312.365	191.976

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR029063	SAM-dependent_MTases

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00038929 vs. Swiss-Prot (Human)

BLAST of TCONS_00038929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00038929 (transcript) - C. hemisphaerica