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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038925 ID=TCONS_00038925|Name=TCONS_00038925|organism=Clytia hemisphaerica|type=transcript|length=787bp
aaattttgtatccttggaaagatattaGAATACTGGCTATAACAAGTCCA
TGTGGAATAGTTTTGGATTTAAAAGAGCTTTATAACTGTGAGAGTAAACG
GCAAGTGTATGGCTGTCTATCTGACTTTCTTTCGGAGCATAGCATGATAG
AAACGATTGTTTACGATGATGCATGTCATTTGAAGCCTTTCGCCACCAAC
AAAATTAGGAAAGATCTTACACCATTGAGTAAAAGAATTGCTGGAATGGA
TTTTGCAGTTGAtcgttttcatttcaaaaaccaCATTGGAGAATGGTGTC
TTGAAAACTGCGACCCTGATATGGTTGCAAATTTAAACGAGGTCAACACC
GAGAGCTGCGAACAGTTATTCAGCTGGTTTTCATCGTTTAAGCACATGAC
CAAACACATGAAGCGCGAGACCTTCATATTTCTTACGTTGTATTTGATGG
AAAGTCAAAATCAGTTGACAGAAGAAAAGCTAAGAAAACGCAAAGAACTA
ATTCTCCCGAATCAAGATATAGGGAtgaactgaataaaaaaattactgtg
ttacttcgaataaacgcctgtgttacttcgaataaacgccctctTCTTTT
AAACAATatcctcgaataaacgcccctcctttcacaaaacatttttattg
aaCGTCCCCTCAAATAAACGGCCCCTTCAAATAACCGCTTCTCCTATAGG
AGAAAACACTCAAATATTATTATACATGCACTCAAATACTAAAAAAGGCA
AATAAGTTTCCAATTtacaaataatttaataaacgcc Run BLAST on NCBI transcript from alignment at sc0001965:8034..10405- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038925 ID=TCONS_00038925|Name=TCONS_00038925|organism=Clytia hemisphaerica|type=transcript|length=2372bp|location=Sequence derived from alignment at sc0001965:8034..10405- (Clytia hemisphaerica)
AAATTTTGTATCCTTGGAAAGATATTAGTGAGTGGAACAATTTGAAATTA
AAAAATATTTTTAAAAATTTTTAAACTGAAGATGAAAATAAAGAAAAAAA
TAAAGATCTTGTAGAAAAGTGTTATAACAATCATTTTCACTGAAGTAAAT
TCTTGATCATCGAACGTCATCTCTGTGAAAAAATTTCTCAAAAATAATCA
TTTAGTCAAAAGATATCAAACAAAGTTATAAGCTGATTGACATCTATAAA
CGCTGTTTATTGCTGTTTTTTTGAGCCAATAACTTATTAACTTTGTATCA
TAACTTTATATTGAATAAATATTTTAGTGAAATTTCTTCACAATGATAAC
CTCCTAAAACCATAAGTGAGAATCGCCTATGACCATAACTGCAGGGAGGT
AGGGAGGGAGGGATTTAAAAAACTTATTTCATCATGTCAGCTTTCAGTTA
TAGCGTCGACTTGAACAGGGAGTTGCGATGGCCATTATGAACATGACGTC
ACGAGGGCAAATTATGGGCAAGTAGAGTAGCGCTTATCAAATAAAAGGTT
AAACCACGATTTAACCTATGTTAAATCCAAATTTAACTTTCCATTTGCCT
ATGACCTAAACTAGGGGTAGAAACCAATCAAGTAGTCAGACGGCTGAGAA
ATAAGCGTGAGTCGATAGATATAAGTTTGGCGTGAAATTAAGGCTAATCC
TCGAATAATAAACTTTCCTTTTTTCAGGAATACTGGCTATAACAAGTCCA
TGTGGAATAGTTTTGGATTTAAAAGAGCTTTATAACTGTGAGAGTAAACG
GCAAGTGTATGGCTGTCTATCTGACTTTCTTTCGGAGCATAGCATGATAG
GTTTGTTTGACATTTTTATGTTTTTTCCAGTAAAAAGACTTCCATTTCAA
GGACCAAAAAAATTAGCCTATCTATCAAAGGTAATGAAACTAACCCCTGG
GAAAGGATTTTGAGGGTTCAAAATTTCGTTGAAGGCATTCAATGTTTTTA
AAAATGCAAATCTACATCTTTCAGGTCTGATTCAAATTTCACCTACATTC
TCGGGGTCAGGTGCTGTAGATTATTGACAATAGATTTTAACTCAAAGTAT
CCTTGAAAGTGAATAATCCTCTTCCCATTATACATTACTTTAGAAACGAT
TGTTTACGATGATGCATGTCATTTGAAGCCTTTCGCCACCAACAAAATTA
GGAAAGATCTTACACCATTGAGTAAAAGAATTGCTGGAATGGATTTTGCA
GTTGATCGTTTTCATTTCAAAAACCACATTGGAGAATGGTGTCTTGAAAA
CTGCGACCCTGATATGGTTGCAAATTTAAACGAGGTATATACAGATTTTT
ATTTTCTTAACTTGAGTATCAAGCCCCCTTAAAGTGGAAATTGAATTGTT
AGAGAGATAACATCATCAACATAACTATTTAAGAACTTCGCAGAGATATC
ATTGAGATTAATGTGAAACCCTGACCAAGTCACAGTCATTATTATAACAC
AGTTAATAATACCAAGCTCACGATATTACTAAAAAATGATGTACAGTGAA
ACCTCCAATTAGCGGACACCATCGGGGAGTAAGCAAAGTGTCCATTAATT
TGAGGTGTCCGCTTTTTGGAGACCGTTTTAGTGGCGTTTGTTAAAAAAGG
GGGAATAGGTTGTGTTTGCTATTTAGACAGTGTCCGCTTTTTTGAGTCTC
CGTTAATTAGAGGTTTCACTGTATATATACCGGGTATGCATAAAAAAGAA
GTTAAGCACAAATTTCAAGTTTTTACATGCGCTACTCTCTTCAGGGAAAT
AATCTCAAATTTTTTAACAATTATTGCTGATTTGACCTTTTTATAATACT
GCTGAAAATTTTATTTAAGCCAATTTGTAATTTTTTATGCACATCCGGTA
ATAGGGTTTAATTTCTTTACATTTAGGTCAACACCGAGAGCTGCGAACAG
TTATTCAGCTGGTTTTCATCGTTTAAGCACATGACCAAACACATGAAGCG
CGAGACCTTCATATTTCTTACGTTGTATTTGATGGAAAGTCAAAATCAGT
TGACAGAAGAAAAGCTAAGAAAACGCAAAGAACTAATTCTCCCGAATCAA
GATATAGGGATGAACTGAATAAAAAAATTACTGTGTTACTTCGAATAAAC
GCCTGTGTTACTTCGAATAAACGCCCTCTTCTTTTAAACAATATCCTCGA
ATAAACGCCCCTCCTTTCACAAAACATTTTTATTGAACGTCCCCTCAAAT
AAACGGCCCCTTCAAATAACCGCTTCTCCTATAGGAGAAAACACTCAAAT
ATTATTATACATGCACTCAAATACTAAAAAAGGCAAATAAGTTTCCAATT
TACAAATAATTTAATAAACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038925-exon-sc0001965-1575043694:10379..10405 | TCONS_00038925-exon-sc0001965-1575043694:10379..10405 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1575043694:9556..9678 | TCONS_00038925-exon-sc0001965-1575043694:9556..9678 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1575043694:9072..9262 | TCONS_00038925-exon-sc0001965-1575043694:9072..9262 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1575043694:8034..8479 | TCONS_00038925-exon-sc0001965-1575043694:8034..8479 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1510915933:10379..10405 | TCONS_00038925-exon-sc0001965-1510915933:10379..10405 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1510915933:9556..9678 | TCONS_00038925-exon-sc0001965-1510915933:9556..9678 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1510915933:9072..9262 | TCONS_00038925-exon-sc0001965-1510915933:9072..9262 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1510915933:8034..8479 | TCONS_00038925-exon-sc0001965-1510915933:8034..8479 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1491911889:10379..10405 | TCONS_00038925-exon-sc0001965-1491911889:10379..10405 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1491911889:9556..9678 | TCONS_00038925-exon-sc0001965-1491911889:9556..9678 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1491911889:9072..9262 | TCONS_00038925-exon-sc0001965-1491911889:9072..9262 | Clytia hemisphaerica | exon |
| TCONS_00038925-exon-sc0001965-1491911889:8034..8479 | TCONS_00038925-exon-sc0001965-1491911889:8034..8479 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001965 | supercontig | sc0001965:8034..10405 - |
Blast
The following BLAST results are available for this feature:
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