TCONS_00038882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038882
Unique NameTCONS_00038882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038882 ID=TCONS_00038882|Name=TCONS_00038882|organism=Clytia hemisphaerica|type=transcript|length=1998bp
ACATAGGATATATGGAATCTAAAGTCCGAACAATGGTCATTGTTTTGCAT
TGTTCTTAACAATGTCTTCGCATGCGCACACTTCGTCGGCGCGAATTCTA
GCGGGAAgttcaaaatggcgattttcttacactgattaGTTCCTGCACTT
TTTTTGGTGACGcgggaatttttttcatattttgactGATTTCATCGCAT
TGGAAAACCCAGTGAGGCTTTATTTAAAAGATTGTCTACCCCTTTGGGGT
TTCCCTTTGAAATTTGACAGATTGGACTCGTTTAtccaaaattattcaaa
tttgtttttgtggTAGTTGCACGAGGAGACACAAGTTAGAGAGAACTCAG
AATGGCCGAAAACCATAATGCTAAGTTGCAAAGGATTTGCAGAATATGTT
GTATGGTGATCAAAACCGATAAATCTTACACCGAAAAAAGACCTATCACC
GACTTTACAACCGAGATGAAAGCATTGTTTGACATTGATGTGTTGAGTGA
TATTCATGCCCCACCTTATCTTTGTGGAAATTGTAAGAGAAAGCTTGAAC
TCAAGAGAAAACATCCGCAATTCTGAAACTGAATTGTTTAATTTTCTGGA
ACATCGTGATGAATGTGATGTTTGCAAAAGATTGGTACCAATACGCTTTA
GTTTAAAGACAGTTGCACCCTCACTTCCTAAATTCGAGAAAATTGGTAAT
GATTATGGCTTCCTTAAATTGAGGACTGATGAAGACTTTCTAGTACTCTC
AAAACCAGTAAATCTAGAAAACACAGTTAAAATATATATTAACTGTCAAA
TTGATCCTAGTTGTCAATGGAAGGTGTTTGTCAGTAATAGACAGCTTGCA
GCTCAACATGAACTTTACCAAAAGTTTGGTTCGGTATTGTCAATGAAAAA
TGCTAATGAATTTTTCGAAATGTTGGCATTGTACAATGTATGTGAGGGTA
ATACAAGATATCAGGAACTTGTCAAGAAAAAAGTTGATAAAGGAAGTGAT
CTCACATTTCTCGACAAGCAAGGAAAAGTTGCTGCTTGCATCGAAGCACC
TGGATTCAACCAAATCCATCCAGACAAGCTTACAATCCGCCATGTAAACT
GTGAATTGATTTCCAAAGATAATATTAAATGTAAAGTTTGTGCAGACTAT
GGACGTAAAATTTTATCTTCCATGTCCAGCAGGGCTCAAAAACTTCCAAC
GACTAACCACCCAAACACTCCAAATATTTATCTCACTCGCCAACAATTGG
AAAACAAAGCCAAAACATTGCAAAGGGATAAAAGAGAACTGCAAAATGAA
ATTAGACGCTTGAAGACTAAAGTAAAAAAGCTTATGACTAATGAAGCTGT
GGCATTGCCTGATGAATGGAAAGAAGTCATTCCAGCTGTTTTTGAAAGTA
ATGATGCAGGTTTTCCAGCTGACACACCCCAAGGAATCTTATGGgaacaa
gaaacaaaaatatGCATCCTTGAAAGATAAAAGGGGAATGCGCTGGCATC
CTTTAATCATTCGATGGGCAATCAGTATCTTCTTGAAATCTCCAGCTACT
TACAGGCATCTCAAAGCTGGAGCATTTCTCAACCTACCCAGTGAAACAAC
GCTGAATGCCTACAGCCAGTTTTGCAGCACGAATACCGGTTTTGATGTTA
AAAAGATAGAGCAACTCCTGAAAGAAATTAAGATAGACGATTGCAAGGAT
TATGAAAAGAATGTTGCTCTGGCGTTTGATGAAATGCATATCAAATCGGG
ACTAGTGTATGACAAGGGATCAGGGAAGTTGATTGGGTTTACAGACCCTG
GTGACATCAAcactgaaatcgaaaaatttgagcAGCAGTTTGCTGGCAGC
CAAGAGCGTCCATTATCCACACAAATATTGTGCTTTATGGTGagacaggc
ccggcggaagcggggagactggggagacttcagcctccccacttttgagc
aattgagattttttcacaaatctttagcgaattttatctcattttgag
Run BLAST on NCBI

protein sequence of TCONS_00038882-protein

>TCONS_00038882-protein ID=TCONS_00038882-protein|Name=TCONS_00038882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MPHLIFVEIVRESLNSRENIRNSETELFNFLEHRDECDVCKRLVPIRFSL
KTVAPSLPKFEKIGNDYGFLKLRTDEDFLVLSKPVNLENTVKIYINCQID
PSCQWKVFVSNRQLAAQHELYQKFGSVLSMKNANEFFEMLALYNVCEGNT
RYQELVKKKVDKGSDLTFLDKQGKVAACIEAPGFNQIHPDKLTIRHVNCE
LISKDNIKCKVCADYGRKILSSMSSRAQKLPTTNHPNTPNIYLTRQQLEN
KAKTLQRDKRELQNEIRRLKTKVKKLMTNEAVALPDEWKEVIPAVFESND
AGFPADTPQGILWEQETKICILER
Run BLAST on NCBI

transcript from alignment at sc0001956:9252..12751-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038882 ID=TCONS_00038882|Name=TCONS_00038882|organism=Clytia hemisphaerica|type=transcript|length=3500bp|location=Sequence derived from alignment at sc0001956:9252..12751- (Clytia hemisphaerica)
ACATAGGATATATGGAATCTAAAGTCCGAACAATGGTCATTGTTTTGCAT
TGTTCTTAACAATGTCTTCGCATGCGCACACTTCGTCGGCGCGAATTCTA
GCGGGAAGTTCAAAATGGCGATTTTCTTACACTGATTAGTTCCTGCACTT
TTTTTGGTGACGCGGGAATTTTTTTCATATTTTGACTGATTTCATCGCAT
TGGAAAACCCAGTGAGGCTTTATTTAAAAGATTGTCTACCCCTTTGGGGT
TTCCCTTTGAAATTTGACAGATTGGACTCGTTTATCCAAAATTATTCAAA
TTTGTTTTTGTGGTAGTTGCACGAGGAGACACAAGTTAGAGAGAACTCAG
GTGAGTTTTGANCCTGGTCATATAATACAAGACTCTAAGGATCAAGGATT
ATTCTGAAAGGTACTCACTTGATTCTGGTTTCATTTTCTAAAAGATTTAC
TTTGGATTCAAAGTAATGTTCTATTTGAATAATTTGCTAAAAATGGCCAC
GTTTGTTATAATTTTATTGTAAAATGTCCTCTGAAAAGAGACATTTTTTT
CTCAACAAAGCCAATTCTATTAGCTGTTCCTAATTTGAGAAGAGCTTTTC
TGAGTGAGGACAAAGCAGTGAGCAATTATTGCCCTTGCCCAATCCAATAG
CAACCATTTAACTTGTTTTTCTTTATGAATTTCTAAGGTAGCCGCCAGGT
TTGGGCTCGACTATTTCCATGAGAAAACCAGGCTATACCCGACAGCTAGC
TTGACTTGAAAGTGACTTCTAGTGTCAAAGTAATAACAAAAATTACTTAT
TGCAAAAATTTTGGTTACATTTAATTTTATTTTTAAATTACCTCTGTAAA
ATTGATTTGCTTTTATTTTGATCTTTCAGAATGGCCGAAAACCATAATGC
TAAGTTGCAAAGGATTTGCAGAATATGTTGTATGGTGATCAAAACCGATA
AATCTTACACCGAAAAAAGACCTATCACCGACTTTACAACCGAGATGAAA
GCATTGTTTGACATTGATGTGTTGAGTGATATTCATGCCCCACCTTATCT
TTGTGGAAATTGTAAGAGAAAGCTTGAACTCAAGAGAAAACATCCGCAAT
TCTGAAACTGAATTGTTTAATTTTCTGGAACATCGTGATGAATGTGATGT
TTGCAAAAGATTGGTACCAATACGCTTTAGTTTAAAGACAGTTGCACCCT
CACTTCCTAAATTCGAGAAAATTGGTAATGATTATGGCTTCCTTAAATTG
AGGACTGATGAAGACTTTCTAGTACTCTCAAAACCAGTAAATCTAGAAAA
CACAGTTAAAATATATATTAACTGTCAAATTGATCCTAGTTGTCAATGGA
AGGTGTTTGTCAGTAATAGACAGCTTGCAGCTCAACATGAACTTTACCAA
AAGTTTGGTTCGGTATTGTCAATGAAAAATGCTAATGAATTTTTCGAAAT
GTTGGCATTGTACAATGTATGTGAGGGTAATACAAGATATCAGGAACTTG
TCAAGAAAAAAGTTGATAAAGGAAGTGATCTCACATTTCTCGACAAGCAA
GGAAAAGTTGCTGCTTGCATCGAAGCACCTGGATTCAACCAAATCCATCC
AGACAAGCTTACAATCCGCCATGTAAACTGTGAATTGATTTCCAAAGATA
ATATTAAATGTAAAGTTTGTGCAGACTATGGACGTAAAATTTTATCTTCC
ATGTCCAGCAGGGCTCAAAAACTTCCAACGACTAACCACCCAAACACTCC
AAATATTTATCTCACTCGCCAACAATTGGAAAACAAAGCCAAAACATTGC
AAAGGGATAAAAGAGAACTGCAAAATGAAATTAGACGCTTGAAGACTAAA
GTAAAAAAGCTTATGACTAATGAAGCTGTGGCATTGCCTGATGAATGGAA
AGAAGTCATTCCAGCTGTTTTTGAAAGTAATGATGCAGGTTTTCCAGCTG
ACACACCCCAAGGAATCTTATGGGAACAAGAAACAAAAATATGCATCCTT
GAAAGATAAAAGGGGAATGCGCTGGCATCCTTTAATCATTCGATGGGCAA
TCAGTATCTTCTTGAAATCTCCAGGTATGTTTACAGATCAAGCTTGAAAA
AAAATACCGTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGTGGATGG
CCAAAAAAGTTTTTTCAGAGGGAATTTAATCTGATTTAATTTGGCGGATG
GACGAAAAAACTAAATTTGACGGGAATTTAATTTGGCGGTCGCTTAAAAA
TTTAACCTTAAGATGGCGTCAAAACAGCAAAAAAATGGCAAAAACGCCTT
AAAAGAGATCATATTTTCAAAATGTTTAATTTGGCGGGAATTTAATTTGG
CGGATTGCGGAAAAAAGAAATTTTGGCGGGAACTTAATTTGGCGGATTTC
AGTCAAATCCGCCAAATCCGCCAAATTTTCTTTCCGCCAAAATTTCTTCC
TTTAAGGTACATAGAATCTACAATGTTTTGAATTTTGAAAACATCAAATC
CATTGCAATTTTTTAAGAATAACTGTGGAAACTAATGATTTACATCCCAG
TGAGAATAAAGGGGCTTACTTCTGATATTAAAAACAGAATGACCTAAGCA
TAGACCTTTTTAATAGGGAGAGTGCCAAATTTTTAGGGGCCTTTGTAGGA
TGGCACCAACATTTACCAAAAAAATTGGAGGGAGTGGGAATGATGGATGA
TTGGTGGGATCAAAGTTTTGGTCAATTTAGTCATATACAAATGACTACAG
GCTGTTTTAAAGTAAAAGTATGTACCAGCAAATCAAAAATGTGCATCATG
TTAAATAAAATGCTAGTTATTGTTATATTGTGGAATTGTTTGCTTGTGTT
TGGTGATGCATTTAGAGCGAGTTCTTCTAAACAAATTTTTGCTGCAAAAA
AGGGGGAATTAGTATAATGGGGGGATGAAATAAACATAGGGGGGGTCATA
TCCCAATGCAAACTATGCTTAGCTCTACAAAGCTCAAAAAATTGACCTAT
CAAATTTTATTTGAAAATGTTCATTGTAAGCCTTTGTTTATTTTCAGCTA
CTTACAGGCATCTCAAAGCTGGAGCATTTCTCAACCTACCCAGTGAAACA
ACGCTGAATGCCTACAGCCAGTTTTGCAGCACGAATACCGGTTTTGATGT
TAAAAAGATAGAGCAACTCCTGAAAGAAATTAAGATAGACGATTGCAAGG
ATTATGAAAAGAATGTTGCTCTGGCGTTTGATGAAATGCATATCAAATCG
GGACTAGTGTATGACAAGGGATCAGGGAAGTTGATTGGGTTTACAGACCC
TGGTGACATCAACACTGAAATCGAAAAATTTGAGCAGCAGTTTGCTGGCA
GCCAAGAGCGTCCATTATCCACACAAATATTGTGCTTTATGGTGAGACAG
GCCCGGCGGAAGCGGGGAGACTGGGGAGACTTCAGCCTCCCCACTTTTGA
GCAATTGAGATTTTTTCACAAATCTTTAGCGAATTTTATCTCATTTTGAG

Coding sequence (CDS) from alignment at sc0001956:9252..12751-

>TCONS_00038882 ID=TCONS_00038882|Name=TCONS_00038882|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at sc0001956:9252..12751- (Clytia hemisphaerica)
ATGCCCCACCTTATCTTTGTGGAAATTGTAAGAGAAAGCTTGAACTCAAG
AGAAAACATCCGCAATTCTGAAACTGAATTGTTTAATTTTCTGGAACATC
GTGATGAATGTGATGTTTGCAAAAGATTGGTACCAATACGCTTTAGTTTA
AAGACAGTTGCACCCTCACTTCCTAAATTCGAGAAAATTGGTAATGATTA
TGGCTTCCTTAAATTGAGGACTGATGAAGACTTTCTAGTACTCTCAAAAC
CAGTAAATCTAGAAAACACAGTTAAAATATATATTAACTGTCAAATTGAT
CCTAGTTGTCAATGGAAGGTGTTTGTCAGTAATAGACAGCTTGCAGCTCA
ACATGAACTTTACCAAAAGTTTGGTTCGGTATTGTCAATGAAAAATGCTA
ATGAATTTTTCGAAATGTTGGCATTGTACAATGTATGTGAGGGTAATACA
AGATATCAGGAACTTGTCAAGAAAAAAGTTGATAAAGGAAGTGATCTCAC
ATTTCTCGACAAGCAAGGAAAAGTTGCTGCTTGCATCGAAGCACCTGGAT
TCAACCAAATCCATCCAGACAAGCTTACAATCCGCCATGTAAACTGTGAA
TTGATTTCCAAAGATAATATTAAATGTAAAGTTTGTGCAGACTATGGACG
TAAAATTTTATCTTCCATGTCCAGCAGGGCTCAAAAACTTCCAACGACTA
ACCACCCAAACACTCCAAATATTTATCTCACTCGCCAACAATTGGAAAAC
AAAGCCAAAACATTGCAAAGGGATAAAAGAGAACTGCAAAATGAAATTAG
ACGCTTGAAGACTAAAGTAAAAAAGCTTATGACTAATGAAGCTGTGGCAT
TGCCTGATGAATGGAAAGAAGTCATTCCAGCTGTTTTTGAAAGTAATGAT
GCAGGTTTTCCAGCTGACACACCCCAAGGAATCTTATGGGAACAAGAAAC
AAAAATATGCATCCTTGAAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023357XLOC_023357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038882-exon-sc0001956-1575043694:12402..12751TCONS_00038882-exon-sc0001956-1575043694:12402..12751Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1575043694:10678..11872TCONS_00038882-exon-sc0001956-1575043694:10678..11872Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1575043694:9252..9704TCONS_00038882-exon-sc0001956-1575043694:9252..9704Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1510915933:12402..12751TCONS_00038882-exon-sc0001956-1510915933:12402..12751Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1510915933:10678..11872TCONS_00038882-exon-sc0001956-1510915933:10678..11872Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1510915933:9252..9704TCONS_00038882-exon-sc0001956-1510915933:9252..9704Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1491911889:12402..12751TCONS_00038882-exon-sc0001956-1491911889:12402..12751Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1491911889:10678..11872TCONS_00038882-exon-sc0001956-1491911889:10678..11872Clytia hemisphaericaexon
TCONS_00038882-exon-sc0001956-1491911889:9252..9704TCONS_00038882-exon-sc0001956-1491911889:9252..9704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038882-proteinTCONS_00038882-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001956supercontigsc0001956:9252..12751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.605783	0.448988	0.554837	0.351737	4.22429	3.5944	1.24938	1.40469	1.04306	1.9043	1.05591	1.35518	0.478625	0.916421	1.16237	1.22853	1.63186	0.879281	0.676658	0.898933	1.46451	1.72022	0.755038	1.23355	0.341954	0.383017	1.62019	1.06344	0.354647	0.434133
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top