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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038876 ID=TCONS_00038876|Name=TCONS_00038876|organism=Clytia hemisphaerica|type=transcript|length=907bp
tatttgcaatgctcaaattttttttccggttgaaaatgccacaaatcgcc
gtttttgcagattttcattagattttttccttgtatttctatgtttttga
cacaaaaacattattgataacaatgctcaccatcaagcatgattcaattg
tcaataaaactgatttttgcgaccaaaactttctatttatttttccctac
aacccttccctctccccttatcaacaatcaatgatgaattatgcattttc
gctaaacgctatattttctgactgatttttttctcctcgcattgctatct
aactttcatcatcaggtaggtccattcagcatctAGCTTGTTTAATCTTC
ACTTTCACCATTTTTAGGTTGCAATGACGAGAGAAAAGTTTCCCGAGAAA
ATCCCATTCCGTTTGACCAGAATGCTGACGAACGCTATGGAGGTGACGGG
TATTGACGGCAACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTTTAC
GTGAAAACAAAGACAGTTTGATGGCCGTTCTCGAAGCTTTCGTTTACGAT
CCTTTATTGAACTGGCGCTTGATTGATAcggAGAAACGATCAAAAGGAAG
ACAAGAATCTTATTCAACGCACAATGAAGGTCACGAATTCCAAGATAACG
TGGATCGAACGCACGACCGTCCACGTGGTAAAAAGGTCACCAATCCGGAA
CACCCGACACAAGATCCGGAACACAGTAATAATAAACCGGAAGCCGTCAA
TAAGAGAGCGTTACAAATCGTGAACCGTGTCCGTGACAAATTGACGGGGC
GCGATTTCAACAAAGACGAAGCGATAGATGTTGACACACAAGTTGATTTA
TTGATTCAACAAGCCACTTCACATGCTAACCTCTGTCAAGCTTATATTGG
ATGGTAA Run BLAST on NCBI transcript from alignment at sc0001953:8627..10320+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038876 ID=TCONS_00038876|Name=TCONS_00038876|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at sc0001953:8627..10320+ (Clytia hemisphaerica)
tatttgcaatgctcaaattttttttccggttgaaaatgccacaaatcgcc
gtttttgcagattttcattagattttttccttgtatttctatgtttttga
cacaaaaacattattgataacaatgctcaccatcaagcatgattcaattg
tcaataaaactgatttttgcgaccaaaactttctatttatttttccctac
aacccttccctctccccttatcaacaatcaatgatgaattatgcattttc
gctaaacgctatattttctgactgatttttttctcctcgcattgctatct
aactttcatcatcaggtaggtccattcagcatctAGCTTGTTTAATCTTC
ACTTTCACCATTTTTAGGTTGCAATGACGAGAGAAAAGTTTCCCGAGAAA
ATCCCATTCCGTTTGACCAGAATGCTGACGAACGCTATGGAGGTTTGTTT
GTTTAACTCCATACGGGATATTACATAGTTAGCCATACAGCAGCAATATC
TTGGTAAACTTTAAAGACTAAAATGGCGAATTGCAGCAATACATTATTTA
TGCATCCTTCAAAGCTTGTAATGTTGGGAATGGCTTGAAATCCTTGTCCT
TTATAAGCTATCGCAGCTAAAGATAAAGCTATTGTTTTGAGACTTAACTC
TGAGCCAAGACATTTTATAAATAAGTGTTATTTCTAGATAAAAGaattga
aagtgaaaaattgatgtctTTCAGGTGACGGGTATTGACGGCAACTACCG
TATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAAGACAGTT
TGATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAACTGGCGC
TTGATTGATAGTAAGTTGTTTTTGTTACCACTTGTATAGCTCTCGctaat
tttaattcaaattacCTTTCCCATTTTATTACCTTTGGGAATCGAACATC
TATCGAATGAACAAAGGATTCTGTTTCAAGTAAGATAACTAGTCTTGGGG
ATTTTTCTTTATACAATAGGTATAAAGCAAAGTAAATAGGTCCCGCACTG
CAAACAGTGTCAATGGTCACTATTaatgttttgttaattttttttcagcg
gAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAACGCACAATGAAGG
TCACGGTAAGAACTTTGGACACTTCTATAATGCTCCTTTTCTCTTAGAAA
ATTATGATTTAGAGAGAAAAGCCGAACAACAGATTAAGAGTACTTAGAGT
AGGCTTGTATTTCTTCCAAAAACGACTGGAATCCTACGAAATTGTATGAA
ATCAACCTAAACTAAAAAGCTAATGATGTCCTTTATACTTCCAGGCTAGT
ATgtacttttattaaaaaaatgctcGACAATATTTGAATTACTTGCATTT
TGTTGTTACTTTAATTTCTTAGAATTCCAAGATAACGTGGATCGAACGCA
CGACCGTCCACGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACAAG
ATCCGGAACACAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGTTA
CAAATCGTGAACCGTGTCCGTGACAAATTGACGGGGCGCGATTTCAACAA
AGACGAAGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACAAG
CCACTTCACATGCTAACCTCTGTCAAGCTTATATTGGATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038876-exon-sc0001953-1491911889:8627..9068 | TCONS_00038876-exon-sc0001953-1491911889:8627..9068 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1510915933:8627..9068 | TCONS_00038876-exon-sc0001953-1510915933:8627..9068 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1575043694:8627..9068 | TCONS_00038876-exon-sc0001953-1575043694:8627..9068 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1491911889:9351..9486 | TCONS_00038876-exon-sc0001953-1491911889:9351..9486 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1510915933:9351..9486 | TCONS_00038876-exon-sc0001953-1510915933:9351..9486 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1575043694:9351..9486 | TCONS_00038876-exon-sc0001953-1575043694:9351..9486 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1491911889:9725..9781 | TCONS_00038876-exon-sc0001953-1491911889:9725..9781 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1510915933:9725..9781 | TCONS_00038876-exon-sc0001953-1510915933:9725..9781 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1575043694:9725..9781 | TCONS_00038876-exon-sc0001953-1575043694:9725..9781 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1491911889:10049..10320 | TCONS_00038876-exon-sc0001953-1491911889:10049..10320 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1510915933:10049..10320 | TCONS_00038876-exon-sc0001953-1510915933:10049..10320 | Clytia hemisphaerica | exon |
| TCONS_00038876-exon-sc0001953-1575043694:10049..10320 | TCONS_00038876-exon-sc0001953-1575043694:10049..10320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001953 | supercontig | sc0001953:8627..10320 + |
Blast
BLAST of TCONS_00038876 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 1.204e-69 Identity = 120/185 (64.86%), Postives = 140/185 (75.68%), Query Frame = 2
Query: 362 F*VAMTREKFPEKIPFRLTRMLTNAMEVTGIDGNYRMTCESVMRVLRENKDSLMAVLEAFVYDPLLNWRLIDT----EKRSKGRQESYSTHNEGHEFQDNVDRTHDRPRGKKVTNPEHPTQDPEHSNNKPEAVNKRALQIVNRVRDKLTGRDFNKDEAIDVDTQVDLLIQQATSHANLCQAYIGW 904
F VAMTREKFPEKIPFRLTRMLTNAMEVTG+DGNYR+TC +VM VLRE+KDS+MAVLEAFVYDPLLNWRL+DT KRS+ R +SYS + E D V+ + T PE KPEA+NK+A+QI+NRVRDKLTGRDF+ D+ +DV TQV+LLI+QATSH NLCQ YIGW
Sbjct: 2362 FEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITCHTVMEVLREHKDSVMAVLEAFVYDPLLNWRLMDTNTKGNKRSRTRTDSYSA-GQSVEILDGVELGEPAHKKTGTTVPESIHSFIGDGLVKPEALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGW 2545
The following BLAST results are available for this feature:
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