TCONS_00038867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038867
Unique NameTCONS_00038867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038867 ID=TCONS_00038867|Name=TCONS_00038867|organism=Clytia hemisphaerica|type=transcript|length=453bp
ATTGGTGACAGACACTTTAAAGAATGTGCCTGGAGATTATCAACACATAC
AGATACTGGCTTGCTTAAGGATTGCAagttcaataaatcaaaaaccGACT
CATACTTGATGGTGTCAATCACTTCAAATATACGGCAAGGAAAGGCTCAA
GCATGCAGTCGATGGTTTGTCACCTTTGATGGAAATGAATGTTCTCCTTA
CCCAATAGACCATGTGTACTACAGAAACACTGCGAATGATGACTACATCC
CGTTCACAATGAAAGGTGTTTGCAAAATCAACAAATCAGGTGTTGTGAGT
GTTGGATTCAACGTTGGGAAATGTTCAGGTTTTGATTCGCTTGGTGATGT
TTACACAGGATGGAATCAAGTGACACGTATCGTTATTGAAGAGCTCTAAA
CACACATTATTTAATTCGTATAATGTAGGaaattgataaaataatatttt
cac
Run BLAST on NCBI

protein sequence of TCONS_00038867-protein

>TCONS_00038867-protein ID=TCONS_00038867-protein|Name=TCONS_00038867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
IGDRHFKECAWRLSTHTDTGLLKDCKFNKSKTDSYLMVSITSNIRQGKAQ
ACSRWFVTFDGNECSPYPIDHVYYRNTANDDYIPFTMKGVCKINKSGVVS
VGFNVGKCSGFDSLGDVYTGWNQVTRIVIEEL
Run BLAST on NCBI

transcript from alignment at sc0001950:25738..27902-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038867 ID=TCONS_00038867|Name=TCONS_00038867|organism=Clytia hemisphaerica|type=transcript|length=2165bp|location=Sequence derived from alignment at sc0001950:25738..27902- (Clytia hemisphaerica)
ATTGGTGACAGACACTTTAAAGAATGTGCCTGGAGATTATCAACACATAC
AGATACTGGCTTGCTTAAGGTATGGCTTTTATAAATGTTAAAAATTTTGA
TGTATTGATAATAACCATAGCAGAGCATTTACTGGTATATCATATTAATG
TTGTGAATCCTCTGAAATTACTCAGCTTCGAAGGATAGAGTGCAGCTTGC
ACCTGATAGATAAAGAGCTCTGACCATAGTCAAAGATTTGATTTTAGTAT
TTGAACATGAAAGTTATGTTAATTGCCGTTATAAATTGCTTTTTAGTCAA
ATTCCTCTTAAGAGTAATTGAGAATTTAATTGCAAAAATGACGCCATGAA
TGAAAATATGTTGCATTACCCTCTTTTATAAAAAGTGCTAAGTTTTCAAA
CTGTCCACAAAGTATTGAACAGTTTTTAATTTTTTGGAAAATTTTTCTAA
ATTAATGCATCAAAAGTTATTACCTATTTTTTCTATCAAAAAAAAAGTTT
GAATGAAAAATTGGTCAAAAAGCACTATTTACAAGGTTTTGTGACAAATA
AGCTTTACGAAAAATGTTCCAAAAATATATTTTAAGATCAGTAAAATATA
CATCATCTACCTGAAAAATAATGTTTCTTCGCCGACAATAAGCTGTTCAA
AATTGAAATACTCTTCCTCGCAAAAGCCTTCATTTTCTTCTCCATCAAAT
TTTTTCACAGCGATTCTCCAATTTTCCAACTCAAGGATAACTGGCCTAAC
ATAAAATGTAAAATATGCCACCGTTTTTTGGGCTACATCAAGTAGGAATT
TATATTTTGTACGTGGCAATCAAAAATTCACTATTGTCAGAGCCCTTAGG
GCCCTCCTTAAGCATATTATTATAGTGGGATCAAAAAAGAAGAATAATTG
TTCAAAACAATATTACTGTATGTATTTCAAAGGAATGTTTACTGTGTGAC
TTCTTATTTAATCTTTCAAATGAACAGGATTGCAAGTTCAATAAATCAAA
AACCGACTCATACTTGATGGTGTCAATCACTTCAAATATACGGCAAGGAA
AGGCTCAAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAATGAATGT
TCTCCTTACCCAATAGACCATGTGTACTACAGAAACACTGCGAATGATGA
CTACATCCCGTTCACAATGAAAGGTGTTTGCAAAATCAACAAATCAGGCG
TTGTGAGTGTTGGATTCAACGTTGGGGTATGTCAAGGTTATCCACTTGGT
GATGTGGNTTGTGAGTGTTGGATTCAACGTTGGGGTATGTCAAGGTTATC
CACTTGGTAATGCGTTCACAGGATTGAATTCAGTGACACGTATCATTATT
GAGGAGCTCTAAACAAATTTCAATTTCTCAAATTAGAGACGTATAATGCA
TAATGTAGAAAATGGCTGAAATAATATTTTTACTGTGTATGAATATTCAT
TACATTGTCATTGAAAATATCAGTTTAATTCATCAGAGAACTAGTAATTT
ATTATGGTTGTTCAATTGAATTGTATTAAGGGTAGGTGGTGAAACCCAGG
GAGAAAGATAGTAGAGGGCATTTTGTAAAATCGCTCGACTGTTTTGGTCA
AAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAATTA
GCCCTAATGTTTTTTTGATTTCACGCCATCACGCCTGAAAAATTTAATTT
TCACGCTCATATTTTCTGGATGAATTCAGTTTTAGACCACGTTTAGACCC
ATTGGTATGGATAAAATGCCGTTATAAACTTAACGTTTGCACACAAATAG
GTGTGTGGTTTGGTTGTCAATCAATTTTTTAGCATTCTCATACGCGTAAG
TCAAAATTATATCATTTTTCCTATCGGAAACACCCGAAAGGTTTGGAAGG
AGCTTGACCTCTGTTTTCTTTTTTTAGTAATACACAGGGGTCAAATTCCA
GTTTTTTTCGGGTGTTTCCGATAGGAAAAAAGACGTAATCTTGANAATCA
GGTGTTGTGAGTGTTGGATTCAACGTTGGGAAATGTTCAGGTTTTGATTC
GCTTGGTGATGTTTACACAGGATGGAATCAAGTGACACGTATCGTTATTG
AAGAGCTCTAAACACACATTATTTAATTCGTATAATGTAGGAAATTGATA
AAATAATATTTTCAC

Coding sequence (CDS) from alignment at sc0001950:25738..27902-

>TCONS_00038867 ID=TCONS_00038867|Name=TCONS_00038867|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at sc0001950:25738..27902- (Clytia hemisphaerica)
GTGTTGTGAGTGTTGGATTCAACGTTGGGAAATGTTCAGGTTTTGATTCG
CTTGGTGATGTTTACACAGGATGGAATCAAGTGACACGTATCGTTATTGA
AGAGCTCTAAGATTGCAAGTTCAATAAATCAAAAACCGACTCATACTTGA
TGGTGTCAATCACTTCAAATATACGGCAAGGAAAGGCTCAAGCATGCAGT
CGATGGTTTGTCACCTTTGATGGAAATGAATGTTCTCCTTACCCAATAGA
CCATGTGTACTACAGAAACACTGCGAATGATGACTACATCCCGTTCACAA
TGAAAGGTGTTTGCAAAATCAACAAATCAGATTGGTGACAGACACTTTAA
AGAATGTGCCTGGAGATTATCAACACATACAGATACTGGCTTGCTTAAGG
TGTTGTGAGTGTTGGATTCAACGTTGGGAAATGTTCAGGTTTTGATTCGC
TTGGTGATGTTTACACAGGATGGAATCAAGTGACACGTATCGTTATTGAA
GAGCTCTAAGATTGCAAGTTCAATAAATCAAAAACCGACTCATACTTGAT
GGTGTCAATCACTTCAAATATACGGCAAGGAAAGGCTCAAGCATGCAGTC
GATGGTTTGTCACCTTTGATGGAAATGAATGTTCTCCTTACCCAATAGAC
CATGTGTACTACAGAAACACTGCGAATGATGACTACATCCCGTTCACAAT
GAAAGGTGTTTGCAAAATCAACAAATCAGATTGGTGACAGACACTTTAAA
GAATGTGCCTGGAGATTATCAACACATACAGATACTGGCTTGCTTAAGGT
GTTGTGAGTGTTGGATTCAACGTTGGGAAATGTTCAGGTTTTGATTCGCT
TGGTGATGTTTACACAGGATGGAATCAAGTGACACGTATCGTTATTGAAG
AGCTCTAAGATTGCAAGTTCAATAAATCAAAAACCGACTCATACTTGATG
GTGTCAATCACTTCAAATATACGGCAAGGAAAGGCTCAAGCATGCAGTCG
ATGGTTTGTCACCTTTGATGGAAATGAATGTTCTCCTTACCCAATAGACC
ATGTGTACTACAGAAACACTGCGAATGATGACTACATCCCGTTCACAATG
AAAGGTGTTTGCAAAATCAACAAATCAGATTGGTGACAGACACTTTAAAG
AATGTGCCTGGAGATTATCAACACATACAGATACTGGCTTGCTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023343XLOC_023343Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038867-proteinTCONS_00038867-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038867-exon-sc0001950-1575043694:27834..27902TCONS_00038867-exon-sc0001950-1575043694:27834..27902Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1575043694:26706..26925TCONS_00038867-exon-sc0001950-1575043694:26706..26925Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1575043694:25738..25901TCONS_00038867-exon-sc0001950-1575043694:25738..25901Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1510915933:27834..27902TCONS_00038867-exon-sc0001950-1510915933:27834..27902Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1510915933:26706..26925TCONS_00038867-exon-sc0001950-1510915933:26706..26925Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1510915933:25738..25901TCONS_00038867-exon-sc0001950-1510915933:25738..25901Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1491911889:27834..27902TCONS_00038867-exon-sc0001950-1491911889:27834..27902Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1491911889:26706..26925TCONS_00038867-exon-sc0001950-1491911889:26706..26925Clytia hemisphaericaexon
TCONS_00038867-exon-sc0001950-1491911889:25738..25901TCONS_00038867-exon-sc0001950-1491911889:25738..25901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001950supercontigsc0001950:25738..27902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
96.3333	88.32	100.395	89.9774	12.1443	7.10319	6.70387	8.53823	93.7424	35.1786	63.0361	68.3411	22.8668	20.8969	72.0184	86.9008	9.35431	9.54105	5.84445	4.97299	13.003	14.4899	70.9773	51.9771	19.1996	18.4872	2.29351	4.75721	29.4392	37.3605
Blast
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BLAST of TCONS_00038867 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.964e-21
Identity = 48/138 (34.78%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:   13 HFKECAWR-LSTHTDTGLLKDCKFNKSKTDSYLMVSITSNIR-QGKAQACSRWFVTFDGNECS-PYPIDHVYYRNTANDD-------YIPFTMKGVCKINKSGVVSVGFNVGKCSGFDSLGDVYTGWNQVTRIVIEEL 396
            ++K+C+W  L+   D G + +C F K +++S L V  + ++R + +   C RW+ TF+G ECS P PI+ + Y +  + +       +   +++G+C+   +G+V V   VG CS +   GD  TGWN V+RI+IEEL
Sbjct:  105 NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK-GDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00038867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR15.964e-2134.78Collagen triple helix repeat-containing protein 1 ... [more]
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