TCONS_00038809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038809
Unique NameTCONS_00038809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038809 ID=TCONS_00038809|Name=TCONS_00038809|organism=Clytia hemisphaerica|type=transcript|length=1037bp
CAAATACATGATTTTTGTCTTCTCGTTATTAAGACGGATCTCAGCAATGT
ACAAATGATTTCGGTCAACTAATCCAGGAAACATTATGATCTGGTTGCCA
TACGTTCTAAAATATTTAACGTTATATTTCTGACTGAAAAATGCCTGAAA
CGGCACTGAAACTCtgagtatcggaaaataaatttgtctctATTCTTGAC
TGATGAcgttatattttatattttcaaactttacagAGGTGAACCCCTAC
GATTACTGTTTGGGTTCACTGGATTGCCGTATCGAACATATGTCTGCTGA
AAGCGATGAAGCTAAACTTATCTCAAAATACATATACAGAGAAGGAAAAA
GCTGTGACGCAAAagTGACCGGAATGTTCCGCGTGGCATGTCAAGAAGAC
ACTAAAAATTACCGAACAGATCTCAAGAACAAGCGTTTGCTATTCCACGG
AACTAAAATGGCGCATATCATGAGTATTTTAAAGAATGGTCTGCAAATTG
CACCCGAAGGATCGATCCGAAGCGGCAGCGCTTATGGAAAGGGAATTTAT
TTCAGTTATGATTTTGAGACATCGAATAATTATGCACAAGGCAAACAGAA
CAAGTACATGTTTTTATGTGAGGTATCACTCGGCAAATCGTACGACAAGG
GGAGAAATCACAGAGGAGGATCATATCCAATGAAAACAACACAAAGTACT
TGGGTACAGACACAAGAAATTCCTAACCCCGACAAACATGTGACCATGTC
ATACGGAGCTAGTCTATTGTTAGGAGAGAATATTCAAAACCCTGACTTAA
TCAATCGATATCATTATTCCCACAATCAACCAGAAATCATTGTGTACGAT
GCGAAACAAGTTAAGATTAGATACATCATCCAATACAAATAAACATGGCA
AATTTGAGCCTTTGACCCTTAGGACCCATATAGATATATAAAACACTAGT
TAGAGCTACTCTatatttcccaagcaacggcaggtgaagcaaaaaaatgc
accataTTTGCAGAAAGTAGGTCACAGTCACTAAGCT
Run BLAST on NCBI

protein sequence of TCONS_00038809-protein

>TCONS_00038809-protein ID=TCONS_00038809-protein|Name=TCONS_00038809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MTLYFIFSNFTEVNPYDYCLGSLDCRIEHMSAESDEAKLISKYIYREGKS
CDAKVTGMFRVACQEDTKNYRTDLKNKRLLFHGTKMAHIMSILKNGLQIA
PEGSIRSGSAYGKGIYFSYDFETSNNYAQGKQNKYMFLCEVSLGKSYDKG
RNHRGGSYPMKTTQSTWVQTQEIPNPDKHVTMSYGASLLLGENIQNPDLI
NRYHYSHNQPEIIVYDAKQVKIRYIIQYK
Run BLAST on NCBI

transcript from alignment at sc0001935:26863..30410+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038809 ID=TCONS_00038809|Name=TCONS_00038809|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at sc0001935:26863..30410+ (Clytia hemisphaerica)
CAAATACATGATTTTTGTCTTCTCGTTATTAAGACGGATCTCAGCAATGT
ACAAATGATTTCGGTCAACTAATCCAGGAAACATTATGATCTGGTTGCCA
TACGTTCTAAAATATTTAACGTTATATTTCTGACTGAAAAATGCCTGAAA
CGGCACTGAAACTCtgagtatcggaaaataaatttgtctctATTCTTGAC
TGATGAcgttatattttatattttcaaactttacagAGGTGAACCCCTAC
GATTACTGTTTGGGTTCACTGGATTGCCGTATCGAACATATGTCTGCTGA
AAGCGATGAAGCTAAACTTATCTCAAAATACATATACAGAGAAGGAAAAA
GCTGTGACGCAAAaggtattattttttcaaaattttattcatcAGTAATT
TAATTACTCTACTCAATGGTCGCCTCAGCTAGTCTAGATTCAGTTATATT
TAAATTGACCCACCAACGATTTTGAGTTCTTCAAAATCTTCAGTTTCCAG
CTCATAATCCTCTGGCTGCTGGTTCTCTATGTCCAATGTGCTATGAGCCA
TTGTTGAGTTGTAtatgttgttataaaaataacAGTTGTATATGTTGTTG
TAAAAATAACACTTGTGAGCAATGATTTGATGATAACAGTTTGAATTTCA
GAGATACTTCGAGTCAGTCAGCCAGTTTTCCTTGTGTTTTTGTACTGAAA
ccgcaatttttaaaaatcggaACATTGCTAGCCTCGTTTTCAAGTATTAc
gcaataatttatgaaaagccgTATTATTCAGCTGACAAATGATGTCATTC
AACTCTCATGTGATCTTGAGGAAGACCCTGGATGTTAGACGTTAGGTAAA
CGATATTTGATACTTGATGGAGCGGTAGAATGATTTTTAGCTTAATCTTG
ATTCTGATGTAATGTTGTACTAACTGCTTTTTGTTTTCGTTTGTTTTAAA
TTGCATCTTGGAGAAAGTGAAGATGAGACTGAAGAGCAGGAAGATGTTTG
AAAATAAGGAGAGTGATATATTTGACAATCAAGATGATGATTCCACAGAT
GTGGAGAATTACGAAGGCATATTCTCATTTCCTTGTTATTGTTTTCACTG
GTGCAATTTACTAAATTTAGCGTTTCAGTCGTAAAATTGTAATATTAACT
TATTAGCAGTCTCATTAAATACACAATGGAGTATGAAAAACTATAGAATA
ACACGTTAGTCGTGAGAAAAGCCCCacatgttttcttttataagaacaag
ctatataagaacagaagGCTTCGATgtccaaaatgctaagaacaagttaa
gaacattaaggCTTTGCAGATTCGAAAATACCCGATTCTGAAAATGGGTC
GAAATGGACACAAAATGAAGAAAGTAagaaacatgttaaaaacattttta
ggcttaaaatccaaaaagttaagaacgttcttaaaaaaagaaaaactgtc
ATTTTACCATTCTTGACACTGGATTAATTCATAACTCAAGAACGCTtaat
aaatttcaagaaaagatCTTGGTTATCTTTTTCAGGTGAggcacaaaatt
ttgaaattaatatgGTTTTAAACTTGCTGTCTCTTCACAAGGAAAATAAG
CAAAATTCCAATCTTGCGCGCACGAAAATTTACCTCTCTTTCTCTCGTTT
TTCTTAGTGACCGGAATGTTCCGCGTGGCATGTCAAGAAGACACTAAAAA
TTACCGAACAGATCTCAAGAACAAGCGTTTGCTATTCCACGGAACTAAAA
TGGCGCATATCATGAGTATTTTAAAGAATGGTCTGCAAATTGCACCCGAA
GGATCGATCCGAAGCGGCAGCGCTTATGGAAAGGTAACAAACACGAAGCA
ATgtgctgttccattaaaaatccatcaaggaggggggggggtaaacaaac
cttttcaaataaaaaataattcgtGGAAATGTGTGGCAAAATGGCAACAT
TTATAAAGAAACTCTTAGAAAAATTAACTTCATACTTTGAGGtgacggtg
gacgaactaaaaccaGTCTTTTACCCTCTGGAGATTTTTGAATAGGTTTT
AACCcctagaaaaattttaaaacatttctttgacccctggaaattcttct
ctcGCTGTTTGGATACAAAATGGGATGGCAAGAAACATGGGAAATCCAAT
CCTTTATTTCATCGATGCAATACACCTAACAACCCTTACAATGCGGTCAG
TATTTGAGAGGATTGGTAATGAATTTGCAAAGGTTTGTGGGACGGCAAGT
CTACTGATGATATGATCTTTCTATTTTCCAGGGAATTTATTTCAGTTATG
ATTTTGAGACATCGAATAATTATGCACAAGGCAAACAGAACAAGTACATG
TTTTTATGTGAGGTAAGAATCTTCAAACAGTAtaaggccaaaatattaag
aacaagtcaatgaaatttaaagtccctgccaacaagaaactctcataaat
gacGCTTCCTTATTCGATAAGGTCCCTTTTATTCGGTGAAAATTCAATTt
cccttaaagatcgaattagggagcgtcaactgtaattatttttttgatta
tcGGACTTTTTGATAGAGTGGTTTCAAGATACCTTCTCCAAAAAAGAGTC
TCCGCGACCTTTTCCCTTGGATCTTAAGCGACACAAGAAAGCCTAAGCAG
CGTAAAGGCCCAGCAGTGTTGGCagtgtcaatatatttttcgtCGCAGAG
TATCGCCATACAACTCAATTTACAggagtgaaatttttcaatgtaTAGAC
TGGAGTCGGGAGAGAAATAAAGATTTAGATGCATTGATTTTTTTAGATAA
CTCTTACTAATCAAGCATGCGCACAGTAANTCAATGTATAGACTCGAGTC
GGGAGAGAAATAAAGATTTAGTTGCATTGATTTTTTTAGATAACTCTTAC
TAATCAAGAAAGGAAGATTTGAACATATAACTTAAGCATGCGCACAGTAG
AAAATTAGATAAttcgattttagcctggaatcgtcaattgataattgcgc
gcataggccccgacaaagtcaaATCTTTTCGACCAGTTGCGTTTTAAAGG
CCCATCCCGCTGCGCGCTGGGCCAATTACGGTCTATCATTCTTCGGCCTC
TTAAGGAATGTTCTTATTCACTTTACTATGCAGGTATCACTCGGCAAATC
GTACGACAAGGGGAGAAATCACAGAGGAGGATCATATCCAATGAAAACAA
CACAAAGTACTTGGGTACAGACACAAGAAATTCCTAACCCCGACAAACAT
GTGACCATGTCATACGGAGCTAGTCTATTGTTAGGAGAGAATATTCAAAA
CCCTGACTTAATCAATCGATATCATTATTCCCACAATCAACCAGAAATCA
TTGTGTACGATGCGAAACAAGTTAAGATTAGATACATCATCCAATACAAA
TAAACATGGCAAATTTGAGCCTTTGACCCTTAGGACCCATATAGATATAT
AAAACACTAGTTAGAGCTACTCTatatttcccaagcaacggcaggtgaag
caaaaaaatgcaccataTTTGCAGAAAGTAGGTCACAGTCACTAAGCT

Coding sequence (CDS) from alignment at sc0001935:26863..30410+

>TCONS_00038809 ID=TCONS_00038809|Name=TCONS_00038809|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at sc0001935:26863..30410+ (Clytia hemisphaerica)
ATGAcgttatattttatattttcaaactttacagAGGTGAACCCCTACGA
TTACTGTTTGGGTTCACTGGATTGCCGTATCGAACATATGTCTGCTGAAA
GCGATGAAGCTAAACTTATCTCAAAATACATATACAGAGAAGGAAAAAGC
TGTGACGCAAAagTGACCGGAATGTTCCGCGTGGCATGTCAAGAAGACAC
TAAAAATTACCGAACAGATCTCAAGAACAAGCGTTTGCTATTCCACGGAA
CTAAAATGGCGCATATCATGAGTATTTTAAAGAATGGTCTGCAAATTGCA
CCCGAAGGATCGATCCGAAGCGGCAGCGCTTATGGAAAGGGAATTTATTT
CAGTTATGATTTTGAGACATCGAATAATTATGCACAAGGCAAACAGAACA
AGTACATGTTTTTATGTGAGGTATCACTCGGCAAATCGTACGACAAGGGG
AGAAATCACAGAGGAGGATCATATCCAATGAAAACAACACAAAGTACTTG
GGTACAGACACAAGAAATTCCTAACCCCGACAAACATGTGACCATGTCAT
ACGGAGCTAGTCTATTGTTAGGAGAGAATATTCAAAACCCTGACTTAATC
AATCGATATCATTATTCCCACAATCAACCAGAAATCATTGTGTACGATGC
GAAACAAGTTAAGATTAGATACATCATCCAATACAAATAAATGAcgttat
attttatattttcaaactttacagAGGTGAACCCCTACGATTACTGTTTG
GGTTCACTGGATTGCCGTATCGAACATATGTCTGCTGAAAGCGATGAAGC
TAAACTTATCTCAAAATACATATACAGAGAAGGAAAAAGCTGTGACGCAA
AagTGACCGGAATGTTCCGCGTGGCATGTCAAGAAGACACTAAAAATTAC
CGAACAGATCTCAAGAACAAGCGTTTGCTATTCCACGGAACTAAAATGGC
GCATATCATGAGTATTTTAAAGAATGGTCTGCAAATTGCACCCGAAGGAT
CGATCCGAAGCGGCAGCGCTTATGGAAAGGGAATTTATTTCAGTTATGAT
TTTGAGACATCGAATAATTATGCACAAGGCAAACAGAACAAGTACATGTT
TTTATGTGAGGTATCACTCGGCAAATCGTACGACAAGGGGAGAAATCACA
GAGGAGGATCATATCCAATGAAAACAACACAAAGTACTTGGGTACAGACA
CAAGAAATTCCTAACCCCGACAAACATGTGACCATGTCATACGGAGCTAG
TCTATTGTTAGGAGAGAATATTCAAAACCCTGACTTAATCAATCGATATC
ATTATTCCCACAATCAACCAGAAATCATTGTGTACGATGCGAAACAAGTT
AAGATTAGATACATCATCCAATACAAATAAATGAcgttatattttatatt
ttcaaactttacagAGGTGAACCCCTACGATTACTGTTTGGGTTCACTGG
ATTGCCGTATCGAACATATGTCTGCTGAAAGCGATGAAGCTAAACTTATC
TCAAAATACATATACAGAGAAGGAAAAAGCTGTGACGCAAAagTGACCGG
AATGTTCCGCGTGGCATGTCAAGAAGACACTAAAAATTACCGAACAGATC
TCAAGAACAAGCGTTTGCTATTCCACGGAACTAAAATGGCGCATATCATG
AGTATTTTAAAGAATGGTCTGCAAATTGCACCCGAAGGATCGATCCGAAG
CGGCAGCGCTTATGGAAAGGGAATTTATTTCAGTTATGATTTTGAGACAT
CGAATAATTATGCACAAGGCAAACAGAACAAGTACATGTTTTTATGTGAG
GTATCACTCGGCAAATCGTACGACAAGGGGAGAAATCACAGAGGAGGATC
ATATCCAATGAAAACAACACAAAGTACTTGGGTACAGACACAAGAAATTC
CTAACCCCGACAAACATGTGACCATGTCATACGGAGCTAGTCTATTGTTA
GGAGAGAATATTCAAAACCCTGACTTAATCAATCGATATCATTATTCCCA
CAATCAACCAGAAATCATTGTGTACGATGCGAAACAAGTTAAGATTAGAT
ACATCATCCAATACAAATAAATGAcgttatattttatattttcaaacttt
acagAGGTGAACCCCTACGATTACTGTTTGGGTTCACTGGATTGCCGTAT
CGAACATATGTCTGCTGAAAGCGATGAAGCTAAACTTATCTCAAAATACA
TATACAGAGAAGGAAAAAGCTGTGACGCAAAagTGACCGGAATGTTCCGC
GTGGCATGTCAAGAAGACACTAAAAATTACCGAACAGATCTCAAGAACAA
GCGTTTGCTATTCCACGGAACTAAAATGGCGCATATCATGAGTATTTTAA
AGAATGGTCTGCAAATTGCACCCGAAGGATCGATCCGAAGCGGCAGCGCT
TATGGAAAGGGAATTTATTTCAGTTATGATTTTGAGACATCGAATAATTA
TGCACAAGGCAAACAGAACAAGTACATGTTTTTATGTGAGGTATCACTCG
GCAAATCGTACGACAAGGGGAGAAATCACAGAGGAGGATCATATCCAATG
AAAACAACACAAAGTACTTGGGTACAGACACAAGAAATTCCTAACCCCGA
CAAACATGTGACCATGTCATACGGAGCTAGTCTATTGTTAGGAGAGAATA
TTCAAAACCCTGACTTAATCAATCGATATCATTATTCCCACAATCAACCA
GAAATCATTGTGTACGATGCGAAACAAGTTAAGATTAGATACATCATCCA
ATACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023293XLOC_023293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038809-exon-sc0001935-1491911889:26863..27227TCONS_00038809-exon-sc0001935-1491911889:26863..27227Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1510915933:26863..27227TCONS_00038809-exon-sc0001935-1510915933:26863..27227Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1575043694:26863..27227TCONS_00038809-exon-sc0001935-1575043694:26863..27227Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1491911889:28520..28695TCONS_00038809-exon-sc0001935-1491911889:28520..28695Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1510915933:28520..28695TCONS_00038809-exon-sc0001935-1510915933:28520..28695Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1575043694:28520..28695TCONS_00038809-exon-sc0001935-1575043694:28520..28695Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1491911889:29144..29224TCONS_00038809-exon-sc0001935-1491911889:29144..29224Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1510915933:29144..29224TCONS_00038809-exon-sc0001935-1510915933:29144..29224Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1575043694:29144..29224TCONS_00038809-exon-sc0001935-1575043694:29144..29224Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1491911889:29996..30410TCONS_00038809-exon-sc0001935-1491911889:29996..30410Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1510915933:29996..30410TCONS_00038809-exon-sc0001935-1510915933:29996..30410Clytia hemisphaericaexon
TCONS_00038809-exon-sc0001935-1575043694:29996..30410TCONS_00038809-exon-sc0001935-1575043694:29996..30410Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038809-proteinTCONS_00038809-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001935supercontigsc0001935:26863..30410 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.0432	3.26662	3.81962	3.83637	9.47673	6.451	8.19035	10.7117	3.8647	7.26068	6.62861	4.23616	4.4833	6.03874	3.60395	4.28513	5.35155	4.90544	5.24218	5.74031	2.70524	2.30132	2.55932	2.4628	5.39428	7.04403	3.43267	1.27305	3.79341	1.86002
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012317Poly(ADP-ribose)pol_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003950NAD+ ADP-ribosyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003950 NAD+ ADP-ribosyltransferase activity
Blast
[Close]
BLAST of TCONS_00038809 vs. Swiss-Prot (Human)
Match: PARP2 (Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.701e-19
Identity = 68/226 (30.09%), Postives = 116/226 (51.33%), Query Frame = 2 
Query:  245 PYDYCLGSLDCRIEHMSAESDEAKLISKYIYREGKSCDAKVT----GMFRVACQEDTKNYRTDLKNKRLLFHGTKMAHIMSILKNGLQIAPEGSIRSGSAYGKGIYFSYDFETSNNY---AQGKQNKYMFLCEVSLGKSYDKGRNHRGGSYPMKTTQSTWVQTQEIPNPDKHVTMSYGASLLLGE----NIQNPDLINRYHYSHNQPEIIVYDAKQVKIRYIIQYK 889
            P D    +L C +  +  ES E K+IS+Y+        +  T     +F V    + + +R DL N+ LL+HG++M++ + IL +GL+IAP  +  +G  +GKGIYF+     S NY   ++ K    + L EV+LG+  +    +      ++   ST    +  P+    VT++ G+++ LG      I NPD      Y+ N  E IVY+  QV++RY+++ +
Sbjct:  357 PLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFREDLHNRMLLWHGSRMSNWVGILSHGLRIAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLN-GSTVPLGPASDTGILNPD-----GYTLNYNEYIVYNPNQVRMRYLLKVQ 576
The following BLAST results are available for this feature:
BLAST of TCONS_00038809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PARP21.701e-1930.09Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=... [more]
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