TCONS_00038806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038806
Unique NameTCONS_00038806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038806 ID=TCONS_00038806|Name=TCONS_00038806|organism=Clytia hemisphaerica|type=transcript|length=254bp
GAACAAGACAACATTTTGGCTGGTGATGAATAAAGATTCAGACGCCAGCG
ACTTTAATATAAGCATAATGATCAAATGATTGATAAATATATACTGTATT
GTGTCATAGACCCGATGGTACTTCTAAGAATCAGACAATTTGTACCCGGT
TAGAGAACCCACCCAGTAATCTATAATGAAGGTTTTTttagccttgggat
gttcttaactttttttcttttaaaatcctaaaaatatttttattttcatc
ttct
Run BLAST on NCBI

transcript from alignment at sc0001933:33254..33507

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038806 ID=TCONS_00038806|Name=TCONS_00038806|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0001933:33254..33507 (Clytia hemisphaerica)
agaagatgaaaataaaaatatttttaggattttaaaagaaaaaaagttaa
gaacatcccaaggctaaAAAAACCTTCATTATAGATTACTGGGTGGGTTC
TCTAACCGGGTACAAATTGTCTGATTCTTAGAAGTACCATCGGGTCTATG
ACACAATACAGTATATATTTATCAATCATTTGATCATTATGCTTATATTA
AAGTCGCTGGCGTCTGAATCTTTATTCATCACCAGCCAAAATGTTGTCTT
GTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023290XLOC_023290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038806-exon-sc0001933-1491911889:33254..33507TCONS_00038806-exon-sc0001933-1491911889:33254..33507Clytia hemisphaericaexon
TCONS_00038806-exon-sc0001933-1510915933:33254..33507TCONS_00038806-exon-sc0001933-1510915933:33254..33507Clytia hemisphaericaexon
TCONS_00038806-exon-sc0001933-1575043694:33254..33507TCONS_00038806-exon-sc0001933-1575043694:33254..33507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001933supercontigsc0001933:33254..33507 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.75516	0	0.815161	0	10.6798	12.2754	3.70242	4.33271	5.94279	2.08917	0	5.26697	2.12963	0	9.75866	2.59213	9.85802	5.52643	4.95427	0	6.959	5.15447	3.75148	1.59688	0	0	1.55065	1.93627	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top