TCONS_00038748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038748
Unique NameTCONS_00038748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038748 ID=TCONS_00038748|Name=TCONS_00038748|organism=Clytia hemisphaerica|type=transcript|length=768bp
tggcgaatttggcttTTTTATGTAACCTCAAGGGAACTGATTTTAGTGAG
TACTAATCATGCTGTCTGTTTTTGAAAACGATATTAAGTTGTGTGGTTCG
GGTTTGTAATTgatgttttatgttttcttcTTTATATATATAGTTAACAT
TTTAGTCTGTGATTTTTATCAGTAACAACTATTTTTGTGCAATaaaaatt
agcttttttttattattatatatcCGCTTAATATTGCAAAGGACATTAGc
ataaaacaaaatgttttcaGTTGTTCTCGTGGAAGTGAGATGGAGGAATA
TCTGGACAAGCAAGGTCAAAATAATTTGTTTATTATATCATTTCATATAA
ACATGTAAGAACAACTAATAACATTTTGTTCGTAATTTCGATTCACAAAA
TTAATCATATTCGATTGACCGaaaatttagtttaaatttaCACATGTGGT
GACTCTAGATAGGTGTGGCTTTTAAAATAAAAGCTAGACCGTTATTTTGC
TCCTCGAATACTAAATATAACTAAAGAAAACACCAAATTAGTGAAACTTT
CGCAAAGTTGGACCAATTCTTTCGTCCCttaatgaggcccccccagcgga
cccaaaattcacgccatcacaccaattttttttcgatttcacgccatcac
gcctgaaagatttgattttcacgatcacaccaatttttttcgatttcacg
ccattacgggtgttttcgataggaaaaatgacgtaatcttgacttatgca
tatcaaaaattgttggac
Run BLAST on NCBI

transcript from alignment at sc0001919:19807..20574

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038748 ID=TCONS_00038748|Name=TCONS_00038748|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at sc0001919:19807..20574 (Clytia hemisphaerica)
gtccaacaatttttgatatgcataagtcaagattacgtcatttttcctat
cgaaaacacccgtaatggcgtgaaatcgaaaaaaattggtgtgatcgtga
aaatcaaatctttcaggcgtgatggcgtgaaatcgaaaaaaaattggtgt
gatggcgtgaattttgggtccgctgggggggcctcattaaGGGACGAAAG
AATTGGTCCAACTTTGCGAAAGTTTCACTAATTTGGTGTTTTCTTTAGTT
ATATTTAGTATTCGAGGAGCAAAATAACGGTCTAGCTTTTATTTTAAAAG
CCACACCTATCTAGAGTCACCACATGTGtaaatttaaactaaattttCGG
TCAATCGAATATGATTAATTTTGTGAATCGAAATTACGAACAAAATGTTA
TTAGTTGTTCTTACATGTTTATATGAAATGATATAATAAACAAATTATTT
TGACCTTGCTTGTCCAGATATTCCTCCATCTCACTTCCACGAGAACAACt
gaaaacattttgttttatgCTAATGTCCTTTGCAATATTAAGCGgatata
taataataaaaaaaagctaatttttATTGCACAAAAATAGTTGTTACTGA
TAAAAATCACAGACTAAAATGTTAACTATATATATAAAgaagaaaacata
aaacatcAATTACAAACCCGAACCACACAACTTAATATCGTTTTCAAAAA
CAGACAGCATGATTAGTACTCACTAAAATCAGTTCCCTTGAGGTTACATA
AAAaagccaaattcgcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023258XLOC_023258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038748-exon-sc0001919-1491911889:19807..20574TCONS_00038748-exon-sc0001919-1491911889:19807..20574Clytia hemisphaericaexon
TCONS_00038748-exon-sc0001919-1510915933:19807..20574TCONS_00038748-exon-sc0001919-1510915933:19807..20574Clytia hemisphaericaexon
TCONS_00038748-exon-sc0001919-1575043694:19807..20574TCONS_00038748-exon-sc0001919-1575043694:19807..20574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001919supercontigsc0001919:19807..20574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139708	0	0	0.162944	0.266717	0.135507	0.244788	0.264087	0.320892	0.266766	0.600066	0.477935	0.635676	1.0438	0.184783	0.244568	0.239447	0.24527	5.75232	6.47487	0.843347	1.34148	1.50002	3.46054	3.19316	2.97189	0.357772	0.951723	1.28882	1.22009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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