|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038725 ID=TCONS_00038725|Name=TCONS_00038725|organism=Clytia hemisphaerica|type=transcript|length=1326bp
ttcttatatagtttgttcttataaaaaaacatgtgaaGTGATTTTTccct
tttctctcttttttcacAGTACGAACAACGCTTTGGAGGATGCTGATAAA
TCATACAATCATCTGGATAACGAACAATTGGAGAAACTTCTCCGAGAAAT
GGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCAT
GTGCCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGA
GAAAAGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGA
TAAGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGATA
ACGTGACTCAGAATTTGGGAGTTACCGCAACTCTGGATTCAGGAGATAAT
GAAACATTAAATGAAGAGTCTATATTATCTACTGATAGAACTGAAGCCTT
ACCTTGTGGAGATAACAAAATCATAGAATCAGAGGATTCCTTGCAAACTA
TCGAGTCTGAAAAGACTCAAATTGGACGCATAGAGACTTTAGGTGAAATT
ACAACTAAGAACAATTCTGACCAATCACATATTCAAGATATTGAAATGAA
CGAATCAAATCACAGTACCGACACGAACAGCCAATCAGATCGTAGTACCG
TTGGTCTCAGCCAATCAGTGTGTAATGCGGATTTGAACGACCAATCAGAA
GCGGATACGGAAACGGCCGACGAACAAGGCAACGAGTCATCGGCAACACT
CGTTAGTAATACCGAcgaattcaaaatcaaaaccgAGAACGAACACTCGC
ATCAGActcttgaaaatgaaatgaaaactgaaaataataataGGGACAAT
GAACATAGACCTTTGGCTACGTTCGGTAAATTACCACCGTTCTCATTCGA
GGGATTGGATCAAGCGGCGATCGTAGGTCGTTTCAAACTTTTACTTGAAG
TGGAGAAAATAGAACATGAGATAGAAGAACGAGTACAACAGCTGAACCGA
CATCTAGACGTACTGGAAAGGGAATATGATCAAATCGACCGTTCAAAAGA
CGTTTTGCGTGACTTCAAGGAGAAGTTCAAGCTTCCAGACATGGATTCGT
TATCCAAATATCTTCATAAAATCAAGTGGACAAGTATAATTAACGAAACA
CAACAACTCTTTTTGCAAACATAAACTTACAATTTACAATATTGTGCACA
CCATAATGTACTTGTAAGGTGCTGAAATATTCTATAAGACTCATTGAGTg
aaaatatataatatgtaaatacataaaaaaaacaGTTGAACTTTCAAGTA
TAATACCTATCCTATCCTGTCTATAT Run BLAST on NCBI protein sequence of TCONS_00038725-protein >TCONS_00038725-protein ID=TCONS_00038725-protein|Name=TCONS_00038725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
SYIVCSYKKTCEVIFPFSLFFHSTNNALEDADKSYNHLDNEQLEKLLREM
DSSNEQYKTVENQTPPCASTSQIQRSGSQEAGGEKAIQPSGDKAIQPSGD
KAIQPSGDKAIQPSGDNVTQNLGVTATLDSGDNETLNEESILSTDRTEAL
PCGDNKIIESEDSLQTIESEKTQIGRIETLGEITTKNNSDQSHIQDIEMN
ESNHSTDTNSQSDRSTVGLSQSVCNADLNDQSEADTETADEQGNESSATL
VSNTDEFKIKTENEHSHQTLENEMKTENNNRDNEHRPLATFGKLPPFSFE
GLDQAAIVGRFKLLLEVEKIEHEIEERVQQLNRHLDVLEREYDQIDRSKD
VLRDFKEKFKLPDMDSLSKYLHKIKWTSIINETQQLFLQT Run BLAST on NCBI transcript from alignment at sc0001915:7654..11568+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038725 ID=TCONS_00038725|Name=TCONS_00038725|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at sc0001915:7654..11568+ (Clytia hemisphaerica)
ttcttatatagtttgttcttataaaaaaacatgtgaaGTGATTTTTccct
tttctctcttttttcacAGTACGAACAACGCTTTGGAGGATGCTGATAAA
TCATACAATCATCTGGATAACGAACAATTGGAGAAACTTCTCCGAGAAAT
GGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCAT
GTGCCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGA
GAAAAGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGA
TAAGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGATA
ACGTGACTCAGAATTTGGGAGTTACCGCAACTCTGGATTCAGGAGATAAT
GAAACATTAAATGAAGAGTCTATATTATCTACTGATAGAACTGAAGCCTT
ACCTTGTGGAGATAACAAAATCATAGAATCAGAGGATTCCTTGCAAACTA
TCGAGTCTGAAAAGACTCAAATTGGACGCATAGAGACTTTAGGTGAAATT
ACAACTAAGAACAATTCTGACCAATCACATATTCAAGATATTGAAATGAA
CGAATCAAATCACAGTACCGACACGAACAGCCAATCAGATCGTAGTACCG
TTGGTCTCAGCCAATCAGTGTGTAATGCGGATTTGAACGACCAATCAGAA
GCGGATACGGAAACGGCCGACGAACAAGGCAACGAGTCATCGGCAACACT
CGTTAGTAATACCGAcgaattcaaaatcaaaaccgAGAACGAACACTCGC
ATCAGActcttgaaaatgaaatgaaaactgaaaataataataGGGACAAT
GAACATAGACCTTTGGCTACGTTCGGTAAATTACCACCGTTCTCATTCGA
GGGATTGGATCAAGCGGCGATCGTAGGTCGTTTCAAACTTTTACTTGAAG
TGGAGAAAATAGAACATGAGATAGAAGAACGAGTACAACAGCTGAACCGA
CATCTAGACGGTAAGTGATTTTCCAACTGTTTAAGTGTCCATCAGCCCAG
cttgttttcaaatttctatATTACAGTAGACTTCTAATGGGAGCATCGAA
AGTGCCAAttattttcctaaattttgaagatagaaaaaatgtgaaatttt
gaaGGTAcatgtatgtatgtatggaaAATGTCCAGACTCCAATCTTGGTA
TCAAAAGTGCCAACttaatgatttctttttaatcCCAGCAAAATCTTTTG
ATAATTTCTGCGAAACTCGTACTGTACGTACTCGTACTACATGCGTTTAG
TTTACAAATGTTTAATTTCCGgttattatttttctcaaagattAAAATGC
TCTGGATTGCATCTTCAATTCTAAATATTATGCTAGAATTGAACCCTTAG
CTAAAGATATGGCAAACAGACGAATTGGTTTACACTCCCCGGAGGGGGTA
CTAGTTTTGTAGAATAACGGGGGATTGCTACCCGAATTTTAGgctctaaa
atcgaaattttgtgaattttgggATCCTTACCGGTACTTTTTTCCTTGAA
TTTAGTCTCATTAGGAATAAATGTTTGAGTATTTGATACTTTTGTAATCC
ATAGGGGGTATTatatttttacgacccttaaaGGGATTTTGAAGGTCCAA
AAAGACACCCTTAAGGCCTCAAGGGTGGTTCATACCCGTATTCTCCGCCC
CTGTCTCACGGCCTCGGTAGAAGTTTtcccctcagtggggataaaaaatt
ttattgaaagcccaatggggatagaaattatattgtttcaaggttaaaaa
tctagtggggatggctttggagtgcaatttttactcgttgaattttgaat
ggggataaaatgaaagtcaatttcNGAGTGCAATTTTTACTCGTttaatt
ttgaatggggatgaaatcaaagtcaatttcccagtggggctgaaattcca
gggtattttcccaacgaggacaaaatttttgccaaattttccctATGGGG
CTGTGTTCCAAGTGGGTccgtgacacaggggtgtattctCCATTTgcata
agtaccccctccctccCTTCGCACTCAGAgcataagtaccccctcccctc
cCTTCGCATTCAAAGCATAAGTACGCCCTCCCTCCCTTCGCATTCAAAgc
ataagtaccccctccctccCTTCGCACTCAGAGCATAAGTCCCCCCTCCC
TCCCTTCGGACTCAAAGCATAAGTACCCCCTTCCCTCCCTTCGCACTCAG
AGCATAAGTCCCCCCTCCCTCCCTTCGGACTCAAAGCATAAGTACCCCCT
TCCCTCCCTTCGCACTCAGAGCATAAGTCCCCCCTCCCTCCCTTCGGACT
CAAAGCATAAGTACCCCCTTCCCTCCCTTCGCACTCAGAGCATAAGTCCC
CCCTCCCTCCCTTCGGACTCAAAGCATAAGTACCCCCTTCCCTCCCTTCG
CACTCAGAGCATAAGTCCCCCCTCCCTCCCTTCGGACTCAAAGCATAAGT
ACCCCCTTCCCTCCCTTCGCACTCAGAGCATAAGTCCCCCCTCCCTCCCT
TCGGACTCAAAGCATAAGTACCCCCTTCCCTCCCTTCGCACTCAGAGCAT
AAGTCCCCCCTCCCTCCCTTCGGACTCAAAGCATAAGTACCCCCTTCCCT
CCCTTCGCACTCAGAGCATAAGTCCCCCCTCCCTCCCTTCGGACTCAAAG
CATAAGTACCCCCTTCCCTCCCTTCGCACTCAGAGCATAAGTCCCCCCTC
CCTCCCTTCGGACTCAAAGCATAAGTACCCCCTTCCCTCCCTTCGCACTC
AGAGCATAAGTCCCCCCTCCCTCCCTTCGGACTCAAAGCATAAGTACCCC
CTTCCCTCCCTTCGCACTCAGAGCATAAGTCCCCCCTCCCTCCCTTCGGA
CTCAAAGCATAAGTACCCCCTTCCCTCCCTTCGCACTCAGAGCATAAGTC
CCCCCTCCCTCCCTTCGGACTCAAAGCATAAGTACCCCCTTCCCTCCCTT
CGCACTCAGAGCATAAGTCCCCCCTCCCTCCCTTCGGACTCAAAGCATAA
GTACCCCCTTCCCTCCCTTCGCACTCAGAgcataagtaccccctccctcc
CTTCGCACTCAAAGCATAAGTACCCCCCTCCCTCCCTTCGCACTCAAAgc
ataagtaccccctcccctccCTTCGCATTCAAAgcataagtaccccctcc
ctccCTTCGCACTCAAAgcataagtaccccctcccctccCTTCGCACTCA
AAGTataagtaccccctccctccCTTCGCATTCAAAgcataagtaccccc
tccctccCTTCGCACTCAAAgcataagtaccccctccctccCTTCGCACT
CAAAgcataagtaccccctccctccCTTCGCACTCAAAgcataagtaccc
cctccctccCTTCGCACTCAAAgcataagtaccccctcccctccCTTTGC
ACTCAGTGCATAAGTACCCCCCCTCTCCCTTCGCACTCAAAGCATAAGTA
CCCCCCTCTCCTCCCTTTGCACTCAAAGTACATTAACTTCGGTTCTTAAA
CCTGTCACCAATACCAATCGTTTTATTTGTTCCACTTTTTATCCTTTAGT
ACTGGAAAGGGAATATGATCAAATCGACCGTTCAAAAGACGTTTTGCGTG
ACTTCAAGGAGAAGTTCAAGCTTCCAGACATGGATTCGTTATCCAAATAT
CTTCATAAAATCAAGTGGACAAGTATAATTAACGAAACACAACAACTCTT
TTTGCAAACATAAACTTACAATTTACAATATTGTGCACACCATAATGTAC
TTGTAAGGTGCTGAAATATTCTATAAGACTCATTGAGTgaaaatatataa
tatgtaaatacataaaaaaaacaGTTGAACTTTCAAGTATAATACCTATC
CTATCCTGTCTATAT Coding sequence (CDS) from alignment at sc0001915:7654..11568+ >TCONS_00038725 ID=TCONS_00038725|Name=TCONS_00038725|organism=Clytia hemisphaerica|type=CDS|length=2346bp|location=Sequence derived from alignment at sc0001915:7654..11568+ (Clytia hemisphaerica)
tcttatatagtttgttcttataaaaaaacatgtgaaGTGATTTTTccctt
ttctctcttttttcacAGTACGAACAACGCTTTGGAGGATGCTGATAAAT
CATACAATCATCTGGATAACGAACAATTGGAGAAACTTCTCCGAGAAATG
GATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCATG
TGCCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGAG
AAAAGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGAT
AAGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGATAA
CGTGACTCAGAATTTGGGAGTTACCGCAACTCTGGATTCAGGAGATAATG
AAACATTAAATGAAGAGTCTATATTATCTACTGATAGAACTGAAGCCTTA
CCTTGTGGAGATAACAAAATCATAGAATCAGAGGATTCCTTGCAAACTAT
CGAGTCTGAAAAGACTCAAATTGGACGCATAGAGACTTTAGGTGAAATTA
CAACTAAGAACAATTCTGACCAATCACATATTCAAGATATTGAAATGAAC
GAATCAAATCACAGTACCGACACGAACAGCCAATCAGATCGTAGTACCGT
TGGTCTCAGCCAATCAGTGTGTAATGCGGATTTGAACGACCAATCAGAAG
CGGATACGGAAACGGCCGACGAACAAGGCAACGAGTCATCGGCAACACTC
GTTAGTAATACCGAcgaattcaaaatcaaaaccgAGAACGAACACTCGCA
TCAGActcttgaaaatgaaatgaaaactgaaaataataataGGGACAATG
AACATAGACCTTTGGCTACGTTCGGTAAATTACCACCGTTCTCATTCGAG
GGATTGGATCAAGCGGCGATCGTAGGTCGTTTCAAACTTTTACTTGAAGT
GGAGAAAATAGAACATGAGATAGAAGAACGAGTACAACAGCTGAACCGAC
ATCTAGACGTACTGGAAAGGGAATATGATCAAATCGACCGTTCAAAAGAC
GTTTTGCGTGACTTCAAGGAGAAGTTCAAGCTTCCAGACATGGATTCGTT
ATCCAAATATCTTCATAAAATCAAGTGGACAAGTATAATTAACGAAACAC
AACAACTCTTTTTGCAAACATAAtcttatatagtttgttcttataaaaaa
acatgtgaaGTGATTTTTcccttttctctcttttttcacAGTACGAACAA
CGCTTTGGAGGATGCTGATAAATCATACAATCATCTGGATAACGAACAAT
TGGAGAAACTTCTCCGAGAAATGGATTCTTCTAATGAACAATACAAAACT
GTTGAAAACCAGACTCCTCCATGTGCCAGCACATCTCAGATTCAACGTAG
TGGATCCCAGGAAGCGGGAGGAGAAAAGGCGATTCAACCTTCAGGAGATA
AGGCGATTCAACCTTCAGGAGATAAGGCGATTCAACCTTCAGGAGATAAG
GCGATTCAACCTTCAGGAGATAACGTGACTCAGAATTTGGGAGTTACCGC
AACTCTGGATTCAGGAGATAATGAAACATTAAATGAAGAGTCTATATTAT
CTACTGATAGAACTGAAGCCTTACCTTGTGGAGATAACAAAATCATAGAA
TCAGAGGATTCCTTGCAAACTATCGAGTCTGAAAAGACTCAAATTGGACG
CATAGAGACTTTAGGTGAAATTACAACTAAGAACAATTCTGACCAATCAC
ATATTCAAGATATTGAAATGAACGAATCAAATCACAGTACCGACACGAAC
AGCCAATCAGATCGTAGTACCGTTGGTCTCAGCCAATCAGTGTGTAATGC
GGATTTGAACGACCAATCAGAAGCGGATACGGAAACGGCCGACGAACAAG
GCAACGAGTCATCGGCAACACTCGTTAGTAATACCGAcgaattcaaaatc
aaaaccgAGAACGAACACTCGCATCAGActcttgaaaatgaaatgaaaac
tgaaaataataataGGGACAATGAACATAGACCTTTGGCTACGTTCGGTA
AATTACCACCGTTCTCATTCGAGGGATTGGATCAAGCGGCGATCGTAGGT
CGTTTCAAACTTTTACTTGAAGTGGAGAAAATAGAACATGAGATAGAAGA
ACGAGTACAACAGCTGAACCGACATCTAGACGTACTGGAAAGGGAATATG
ATCAAATCGACCGTTCAAAAGACGTTTTGCGTGACTTCAAGGAGAAGTTC
AAGCTTCCAGACATGGATTCGTTATCCAAATATCTTCATAAAATCAAGTG
GACAAGTATAATTAACGAAACACAACAACTCTTTTTGCAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038725-exon-sc0001915-1491911889:7654..8663 | TCONS_00038725-exon-sc0001915-1491911889:7654..8663 | Clytia hemisphaerica | exon |
| TCONS_00038725-exon-sc0001915-1510915933:7654..8663 | TCONS_00038725-exon-sc0001915-1510915933:7654..8663 | Clytia hemisphaerica | exon |
| TCONS_00038725-exon-sc0001915-1575043694:7654..8663 | TCONS_00038725-exon-sc0001915-1575043694:7654..8663 | Clytia hemisphaerica | exon |
| TCONS_00038725-exon-sc0001915-1491911889:11253..11568 | TCONS_00038725-exon-sc0001915-1491911889:11253..11568 | Clytia hemisphaerica | exon |
| TCONS_00038725-exon-sc0001915-1510915933:11253..11568 | TCONS_00038725-exon-sc0001915-1510915933:11253..11568 | Clytia hemisphaerica | exon |
| TCONS_00038725-exon-sc0001915-1575043694:11253..11568 | TCONS_00038725-exon-sc0001915-1575043694:11253..11568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001915 | supercontig | sc0001915:7654..11568 + |
Blast
The following BLAST results are available for this feature:
|
