TCONS_00038717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038717
Unique NameTCONS_00038717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038717 ID=TCONS_00038717|Name=TCONS_00038717|organism=Clytia hemisphaerica|type=transcript|length=384bp
CCTAGTTAAATAACATATGTTCATCAATAGCCCATTAGTAAAAGCTCTGA
TGGAAACAATTGTTTACatacagtagcgtggtggcaggggggcaACTCCC
CCCTCCCAGTGGAGGCTTTTTGAAGGGGCGTTAAAAGAAGAAAGTTTTCT
TTGCTCTTTAGTATGTAGCGCCTCTTTCCCTTTAAGGCGCCCTTTTACTA
aacttttgctcaaatttaagctctattttggaaaaactttccctcgcttc
gctcgcgtcaAACAGAGTCAactttttgcattgaatttttTAGAATAGGC
ATAACTAATAATAGTTCCTCAAGGATCGTATGTGGAATTTTTCATAAGAT
TTGTCATATATTATATGcctgattttaaagtttt
Run BLAST on NCBI

transcript from alignment at sc0001912:17185..17568

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038717 ID=TCONS_00038717|Name=TCONS_00038717|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0001912:17185..17568 (Clytia hemisphaerica)
aaaactttaaaatcaggCATATAATATATGACAAATCTTATGAAAAATTC
CACATACGATCCTTGAGGAACTATTATTAGTTATGCCTATTCTAaaaaat
tcaatgcaaaaagtTGACTCTGTTtgacgcgagcgaagcgagggaaagtt
tttccaaaatagagcttaaatttgagcaaaagttTAGTAAAAGGGCGCCT
TAAAGGGAAAGAGGCGCTACATACTAAAGAGCAAAGAAAACTTTCTTCTT
TTAACGCCCCTTCAAAAAGCCTCCACTGGGAGGGGGGAGTtgcccccctg
ccaccacgctactgtatGTAAACAATTGTTTCCATCAGAGCTTTTACTAA
TGGGCTATTGATGAACATATGTTATTTAACTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023233XLOC_023233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038717-exon-sc0001912-1491911889:17185..17568TCONS_00038717-exon-sc0001912-1491911889:17185..17568Clytia hemisphaericaexon
TCONS_00038717-exon-sc0001912-1510915933:17185..17568TCONS_00038717-exon-sc0001912-1510915933:17185..17568Clytia hemisphaericaexon
TCONS_00038717-exon-sc0001912-1575043694:17185..17568TCONS_00038717-exon-sc0001912-1575043694:17185..17568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001912supercontigsc0001912:17185..17568 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	8.88276e-05	0	0	0.0538533	0	0	0	0	0	9.86695e-05	0.179487	0	1.04603	0.420891	0.000326532	0.701444	0	0	0.000151763	0.000194569	0	0	0	0	0.000216383	0	0	0.000300412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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