TCONS_00038715 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038715
Unique Name	TCONS_00038715
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	291

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001912:27580..35156-

transcript sequence

>TCONS_00038715 ID=TCONS_00038715|Name=TCONS_00038715|organism=Clytia hemisphaerica|type=transcript|length=291bp
GGACGTTGTAGGACAGACTATACTCAACCAGAGGCTAAAAGCTTGGATCG
TCAAGGCCAGTGCtgtaatcaaaatttttcaaaatggcggaaaaAGCGCG
GAATGTTTTCACTTCTGTTTCTGACACTGTCTTTCCAGGATCAAAGAAAA
TTATCAACAAAGGAAGAACACACCCTTCGTCAGGGAATTATCTTATTTCC
AACCTTGGTCTACAGATGGCGCTGTATTTCAATGTTCATTATTCACCTTT
CTGGTTTGTTTCATGTATTGTTATGTTAACTGTGAAAGTAA

Run BLAST on NCBI

transcript from alignment at sc0001912:27580..35156-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038715 ID=TCONS_00038715|Name=TCONS_00038715|organism=Clytia hemisphaerica|type=transcript|length=7577bp|location=Sequence derived from alignment at sc0001912:27580..35156- (Clytia hemisphaerica)
GGACGTTGTAGGACAGACTATACTCAACCAGAGGCTAAAAGCTTGGATCG
TCAAGGCCAGTGCTGTAATCAAAATTTTTCAAAATGGCGGAAAAAGCGCG
GAATGTTTTCACTTCTGTTTCTGACACTGTCTTTCCAGGATCAAAGAAAA
TTATCAACAAAGGAAGAACACACCCTTCGTCAGGTATACTTCTTGCTTAC
AAAGTCTAGTAGCTTTATTTTGTTTTGAAATTGTAACCGTGATGAGATCG
GGTAACTTGCAAGTCAAGTGGAGGGAAACTTTGCTGCTGCACGTACAGCA
GCAATCTGCTGCTGCACGTACAGCAGCAATCAAACATGAAACGACCCTGC
CCAGCCTAGACTAATGTTAATTTTTCTTTCAGAAAAAAGACTATAATTTG
TTTACCTTTATCCTGCAGCTTCCCAACATTCAAGCTCTCAAACATCACAA
GCCGAATGAAATTATTTTCGATTTCCCGTAGAAATTATGCGATGAAAAAT
CCAGGAGGGGTCGAAGAATATGAAGACTTTTTATTTCCAAACAAGTTATC
TTTGCTTACAGTATAACGAAATATTACTTTTCAATATATTTGCTAAATAT
AATGTTTGATTACAAAAATACTTTACACTGTATTTAAAGTTTGAAAAAGT
CGATTCTACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTGGAAATACTCCAGGGAAATCAAAATTGTTTGGGTTTAGGATTTGGGTA
TATCCGCCATTATGGAATTGAAATATGTGTTAAAACTGGCTAAAATACTA
CGTTTCAAGCAAAAACCTCGTTTTTGAATAAAAATTGCTCTAAAATGACA
ATAGACATGGACCCAAATTTTTTTGAAGTGATAGTATTCTGTGAATATTC
CTGGAAAAACAAAATCATTTCAGTCTGAGATTTGTTTACATCAACCCTTA
TGGAAATGAAATCTCTGTTAAAATGCTACATATTTCCATCCCATATATCA
TAATTGACTAAATATTTTGTATATTATATTAAGCAAAGAATGTGAATTTA
CAATCCTTTAATTTAGAAATACTAGTTGAAATATATTATTTAAAAAATCC
CATTTCACTCAACAATTCTTTATAGCCCACTTACATTTCCATTTTCAAGA
CTTGTTCCGTCAAAAAAAGATTGAATTTTAGCTTGAAATATTGTATACAT
TTTAAAACTAGCTTCAGTTTTAAAAATGCGGTCCCAGAAGCATGTTATAC
CTGAATAGTTTTTACCCCTAGAGTATTTACAGAACACTATCACTGCAAAA
AGATTTTAGGTTCATGTCTATTGCCATATTAGAGCAGTTTTTAAGTCAAT
ATAATATTTTTGCTTGAAATGTTGCAATTTAGCCAGTTTTAAAACATATT
TCAATTCCATAATGGCGGATATACCCAAATCCTAAACCCAAACAATTTTG
ATTTCCCTGGAGTATTTCCAGAAGACTATCAATGCAAAAAAATTTGGGTC
CATGTCTATTGTCATTTTAGAGCAATTTTTATTCAAAAACAGGGTTTTTG
CTTGAAACGTTGTATTTTAGCCAGTTTTAACACATATTTCAATTCCATAA
TGGCGGATATACCTAAATCCTAAACCCAAACAATTTTGATTTCCCTGGAG
TATTTCCAGAAGACTATCACTGCAAAAAGATTTTAGGTTCATGTATATTG
CCATTTTTAAGATTTTTTGAGTGAAAAATTGGATTTTTGATTGAAATATT
GCGTTTTAGCAGGAATTTCAATTCCAAAATGGTGGATATACCAAAATCCC
AAGCCCAGATGACTTTGATTTTCCTGTAGTATTTCCAGAAAACTATCACT
GCAAGAAAATTTGGACTCATGTCTATTGACATTTTCAGTCCAAATTTGGG
TTTTTGGCCTGAAAAATGGCTCTTAGCAGGGATTTTATTTCCATAATGGC
GGACATAGATCCATCCCAGACGCAAATGATTTTGATTTCCCTGGAGTATC
TCCAGTATACTATCACTGCAAAAAAAATTTCAGTCAGCATTTAAACTCAG
TTTGTAGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAACCGGACGCACTTCGGACTCAAGTCTGATGTTGAGATTGTCCGGTGTT
AAAAAGTATTCTCATCTGATACCGGACTTGGCGTGTCCGGTGTTTGTAAA
ATCCGGTGCGTCGGCAGGGATGAAAATTTTAGGGTGATATAATAATATCA
TGAATAGAAAAAACATGCTAAAATTTGATCAACAGAACAAAAAAGTTTTG
TTTACTTCCTCTCCAGAGATCAAACGGTGGATGATGGAGAGTATCAGCAT
AATGCACATCTGTTTTGTCAATTACAGTAAAGGTGTTTAGAGGCCCAAGA
CATGAGAAACCTACATTCTCGGGGTCAGGTGCTGTAAATGTGTTGGCAGA
CCCCATATATTGTGATTCTCTTATTATTTTTGTCAATTTAAGTTTTTTTG
TCAATAAAATGACAATGAATAATAGTGACCTTCAATGGGAAAAGGATCAC
TTTCGTTTTCTACAGAAAGGTGTATTGATAGTAAAATTATCAATAACTTG
ATCGATTTTATTGATAACTGTAAATTCTTCGTCGATAGGCTGGTTTGCAT
CGACAAGGAAGTTCTATCGATAATTCTATCGCTATAAGGATTATCGATAA
AGTCATCTTTGGAAAGTCTTTATCAATAAAATTTTATTGTTAACAATTTC
TAACGCTAAACATGATAAGTTTACGTTTCTGTTTGATTTGTTCTTTCTAA
AATAAGAAATCACGTAAAAACGAGTTGATGAAATTAAGCATTAAAGTCTG
TCTCAAAATAATTTGCAGCTGGAGACAAAAAAGGCTGTAACTTGTGATAG
AATTCGAATCAAGTTGCGATTTTGTGCTCGTTAAAAAGATATTCGTGAGT
GGAATATTATCAAGTAAAAGATTTGGAAAAAAAAGGTAAATGAAAATGAA
AAATGAAGAAGAAAGAAATCAATTTCTTGTAGAAATGTGGTATAGTTACC
ATTTTCAGAGGAGTGATTCTGCAATCTTAGATCATTATCACTGTTAAAAT
ATTTTTCAAAAATATTCATTCAATCAAAAGATATCAAACAAAGTTTATTG
CTGGTTGACTCTATAAAGTAGTAAAAAACGACAAAAAAACTGTCTATTGT
AAATACTCGTTTTTTACTTGATAATATTCCACTCACGAATATCTTTTTAA
CGAGCACAAAATCGCAACTTGATTCGAATTCTATCAAAAGTTACAGCCAT
TTTTTTCTCCAGCTGCAAATTATTTTGAGACAGACTTCAGAAATACTCGT
GAAAAATACAAGAAAAGCGGGTTGATAAAACTTTTCGTTTATTGTTTATA
TACACATCTTTTTATGTTATGCATTTTTTTCTTTCTTTTCTTCTTATCTT
ATATACAAAAATATTAATTGTTTGGGCAGTAATCCTGATTTATGTCTGAA
TTTATGCTTCCCTGAAAGTCTGAAGACCTAAAAAATTGTCGAACCGATTG
GAAGAGTTGGTTGGTTGGTTACCAATAAGTTCATAATAATTTTTTTAATT
TAATTTGCAAATGCAAGCGTATTGACCTTTAATTCAACCCTATTTTTCTC
TTTTTCTTTTTCTCTCTAGGGAATTATCTTATTTCCAACCTTGGTCTACA
GATGGCGCTGTATTTCAATGTTCATTATTCACCTTTCTGGTTTGTTTCAT
GTATTGTTATGTTAACTGTGAAAGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023231	XLOC_023231	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038715-exon-sc0001912-1575043694:34974..35156	TCONS_00038715-exon-sc0001912-1575043694:34974..35156	Clytia hemisphaerica	exon
TCONS_00038715-exon-sc0001912-1575043694:27580..27687	TCONS_00038715-exon-sc0001912-1575043694:27580..27687	Clytia hemisphaerica	exon
TCONS_00038715-exon-sc0001912-1510915933:34974..35156	TCONS_00038715-exon-sc0001912-1510915933:34974..35156	Clytia hemisphaerica	exon
TCONS_00038715-exon-sc0001912-1510915933:27580..27687	TCONS_00038715-exon-sc0001912-1510915933:27580..27687	Clytia hemisphaerica	exon
TCONS_00038715-exon-sc0001912-1491911889:34974..35156	TCONS_00038715-exon-sc0001912-1491911889:34974..35156	Clytia hemisphaerica	exon
TCONS_00038715-exon-sc0001912-1491911889:27580..27687	TCONS_00038715-exon-sc0001912-1491911889:27580..27687	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001912	supercontig	sc0001912:27580..35156 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1554	1.68148	0.488091	3.34264	18.6027	12.4032	6.09643	14.5279	3.99589	3.59967	4.80416	4.59355	3.15367	4.76381	2.93738	2.1015	3.2361	5.63873	0.916495	2.39761	2.91755	4.26923	4.44841	3.59489	16.1991	13.6312	0	0.630833	0.478465	1.94992

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00038715 vs. Swiss-Prot (Human)

BLAST of TCONS_00038715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00038715 (transcript) - C. hemisphaerica