|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038714 ID=TCONS_00038714|Name=TCONS_00038714|organism=Clytia hemisphaerica|type=transcript|length=912bp
ACTATGACAATATTACTACCGAGGTGGTATAGAAActgaaatttttggaa
aatagtaagcaaaaaaattcactttttttttcaatcatgaaagatatttt
aacaaacttggaaaatgattgagatatttaaactcttgaacggtcgttag
TAAGACATGCCGCAATAAGGctgtatcaaaaatgaggaattcagtgaaaa
aattgccaaatttggcattttTGGGGGTGGTATATACCAATTTTGAGGGT
CAAATCAGTTAGTACACCAGAGAACCAAGGAGTAACTGCAAGGGTGGTGG
TGTCTGAAAACAATGTCAAAAATTGCAGTTACTCCACATAGTGTAAGACC
CCCCTGGAGTATATGAAAAAGTCCTTAAATTTTTACAGAAATCTCCTCGG
AAAAGTGAAAAATCCTATATTCTCCTTAAATTTGAAATTTTGAAAGCTGT
GGGAACCCTGATTGTAGAAAGTAGTGCATGTTAATAGTTTCTGCAATCAT
CTTTCATTTAAGGTACCAACTCGTAACCAAAAAGAATCAAACGTAGTTAT
GGTCATGAATCAAAAACATTTATGGAATATACAACACCTCATTCCTGAAA
GAGTCGACAAAACTCTTTTCGTGTCAAAATACTGTTCCAGGTGAGGCTAA
ACATGGGAAACCGACACAGTTTGATgcaacaaaatatttctttggatTCA
AAGTAACCATACTCAAACTACCGTACTGGAACCCCTACGCAGCTCATGGA
AAACCTTTTAGAGACTGCGATTATCGTGAAAAGCCTTGATAATTGTTGGA
CAAAGAAACAAAGAGGACTTGTGGAAAGAAAACGGTCAAGTTgtctttta
aatttaatttttgtacagTTTGTGATGTTACGAATGTAGCATGGAAGGGA
ATTGAAAAGGTC Run BLAST on NCBI transcript from alignment at sc0001912:20172..22579- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038714 ID=TCONS_00038714|Name=TCONS_00038714|organism=Clytia hemisphaerica|type=transcript|length=2408bp|location=Sequence derived from alignment at sc0001912:20172..22579- (Clytia hemisphaerica)
ACTATGACAATATTACTACCGAGGTGGTATAGAAACTGAAATTTTTGGAA
AATAGTAAGCAAAAAAATTCACTTTTTTTTTCAATCATGAAAGATATTTT
AACAAACTTGGAAAATGATTGAGATATTTAAACTCTTGAACGGTCGTTAG
TAAGACATGCCGCAATAAGGCTGTATCAAAAATGAGGAATTCAGTGAAAA
AATTGCCAAATTTGGCATTTTTGGGGGTGGTATATACCAATTTTGAGGGT
CAAATCAGTTAGTACACCAGAGAACCAAGGAGTAACTGCAAGGGTGGTGG
TGTCTGAAAACAATGTCAAAAATTGCAGTTACTCCACATAGTGTAAGACC
CCCCTGGAGTATATGAAAAAGTCCTTAAATTTTTACAGAAATCTCCTCGG
AAAAGTGAAAAATCCTATATTCTCCTTAAATTTGAAATTTTGAAAGCTGT
GGGAACCCTGATTGTAGAAAGTAGTGCATGTTAATAGTTTCTGCAATCAT
CTTTCATTTAAGGTACCAACTCGTAACCAAAAAGAATCAAACGTAGTTAT
GGTCATGAATCAAAAACATTTATGGAATATACAACACCTCATTCCTGAAA
GAGTCGACAAAACTCTTTTCGTGTCAAAATACTGTTCCAGGTAAAAATTG
ACAAATTTTTTGTGTGTTTGAAAAAAAGTGCACCAGTTTCAATTAAGAGA
TTGTATGGTATATATCTGAACATTTCACTTTCTTAAATTTTGAACTATGC
TTGAAATTTACTTCACGCATTCAAAAGTTATGAAGAAAATTCTAAAAAAA
TTCTCCTTTGAAAAAGCACCATTATAGAGAAAAACGAGGGAATCAATTTT
TTTCTCTCTTTCTGTGCCACACACACACAAGACCTCCTTTTTCTTGTTTT
TGTTGTAATGCAATACCTAAAGGGAATATAAATTAATGCGATATTTGCTT
AATGCAGAATAAATTAATGCGAATGACACACCAAAAATTTTAAATTTTGC
GGAAAAAATTAATGTGAAGGGTCCAAAATTTCAAGGTTTGCAAAATTGAT
TAGTGGGAACATAGTTCGGACCCCCCCCTTTCTTAAGGGGAGGATGACAC
CTTCCAAAAAACTGAAGAAGGGGGGGTCAGAAATTTTCACTAAAAAGGGG
GGATAGCAAGGAGGGGAGGGCTTACATATATTGTAGACTATTTTCCAGTA
CTGTTATGAAATTTGGTCTGCATGAAAGGAAGTTCTTTATTTTCACTAAA
AAGTGGTATTATATTTGCCAGACTTAATTTTTCTTTACTGTTTCCCTTCC
CTTTTTACCAGAAAATATTTAACCCGAAACCCTTGGGGGATAGGCATTTT
TAAAGGTTGGGGGGATGCCAAGAAGGGGGGTCAGACCCCTTTCCGCACTA
TGGGGAGGAGGACTTCAATGATTGTTTTTTTCCTTCAATAAACCTTTTTT
GTAACAATGAACTAAAGAAATTCTAAAACAATACAAAAAAATATACAGAA
AAGTCTTTCTTTCTCGTCATTGATCACTAAATAAAAGTTTTGATTTTTTT
TCTCATCTTAATTTTATATTTTTCAGAATTAATTAATGGAAACAGTGGAA
AATTTCAAGTTTTGCGGGATTTAATTTTGCGAAAAAGGCTCAAATTCGCA
TTAAATAATTCTTGCATTAATTTATTCTCTTAAGGTAGTCAGTAATTAAA
AACTATTAATTTTAGCAATTCTTTTTTAGTTTTTGTATTTATGATAATCA
AGACGTGCCCCTCAAGTCTTTAGTTGTTGAAAATATATCAAAAAACTGCA
TAAAAAGCTTTCTTCAGTGTTCTATAACTTGAATTTGATACCCACTTTTT
TCTCAAAAATGATCGTCCACTTACAGTGTAGCAAAAGTTCAGTGCATATT
TTTAGACAAAAATGGAAATTTTTACCAAAACAGTGCTTTCAGCTGCTTCT
CTACTTTTTGGAAAAACACGCCCTTAACCACCGCAGATACTCGTCAGTCA
ATTTGCCTGGCTGCCCTCTGTGAAATTTTTAATTGTTTATTAACTGTTTA
ATAAATATTTATTTATTTGATTCAGGTGAGGCTAAACATGGGAAACCGAC
ACAGTTTGATGCAACAAAATATTTCTTTGGATTCAAAGTAACCATACTCA
AACTACCGTACTGGAACCCCTACGCAGCTCATGGAAAACCTTTTAGAGAC
TGCGATTATCGTGAAAAGCCTTGATAATTGTTGGACAAAGAAACAAAGAG
GACTGTTATTTAAACATACTCCCGCTCTCCTGTAGGGATAATAATAATAC
CGGTTCGTCCGGTAGTGTGGAAAGAAAACGGTCAAGTTGTCTTTTAAATT
TAATTTTTGTACAGTTTGTGATGTTACGAATGTAGCATGGAAGGGAATTG
AAAAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038714-exon-sc0001912-1575043694:21940..22579 | TCONS_00038714-exon-sc0001912-1575043694:21940..22579 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1575043694:20326..20504 | TCONS_00038714-exon-sc0001912-1575043694:20326..20504 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1575043694:20172..20264 | TCONS_00038714-exon-sc0001912-1575043694:20172..20264 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1510915933:21940..22579 | TCONS_00038714-exon-sc0001912-1510915933:21940..22579 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1510915933:20326..20504 | TCONS_00038714-exon-sc0001912-1510915933:20326..20504 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1510915933:20172..20264 | TCONS_00038714-exon-sc0001912-1510915933:20172..20264 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1491911889:21940..22579 | TCONS_00038714-exon-sc0001912-1491911889:21940..22579 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1491911889:20326..20504 | TCONS_00038714-exon-sc0001912-1491911889:20326..20504 | Clytia hemisphaerica | exon |
| TCONS_00038714-exon-sc0001912-1491911889:20172..20264 | TCONS_00038714-exon-sc0001912-1491911889:20172..20264 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001912 | supercontig | sc0001912:20172..22579 - |
Blast
The following BLAST results are available for this feature:
|
