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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038711 ID=TCONS_00038711|Name=TCONS_00038711|organism=Clytia hemisphaerica|type=transcript|length=861bp
AAAGTTGtgcatagcactccttatcacacgcctaaattactaaaattaag
gttttaggagtgtgattgaccacacgcctgaaattttcaaatgatgcagc
ctgctTTAGGTATCAGTAACACAGTTGCATAGATAAAAACTCAGTTTGCG
GCTGATGGGGCATCCTGCTGATCATCTGATAATCTTCAGagaTGAAAAGG
ATGTCACTTCATAACATAATGAGATGTGGCCCTCTTGCCCTCTTTCTTGT
TTAACAGAAAAGAGCCAGATCCTGCCAGAGCTTTTATTGGTAATCTGCCA
TCAGTAATTGAACTCCACCGCAAGGTTTGATCAAGTTTGTGTAGTCCCAG
GAGGTGCAGTCACAGGAGGTACTTTCTCAAGGGGTATGCAGTTACCACAA
GACATTATTAGTAATAATCTTAACTGAGAGCTCAGAGGTTACAAAAATCG
CTGGTTTGGTTTTAAAGATGCTAATTACTCAGACAGAAATGTCTAAGGAA
CTTAAATTGACGACTTTCAAAATGAATCCAAAGAGAAATGTACTATCAAA
TAATGTTTGGGATCTAacgatttttttgtgattttatagTTAAATACTAT
TTATTAATGAGGATGAAATTTGTTCGCTTTATAGCTTTATACAGTATGGA
GCTCTAAAATGAGATGATTTTTGTCGATTATATTAAttgtatttttgaca
aaatcataTGCCCATAGCAAAAACTTTCATagtaatataatttttttttc
ctttgtaCATTAGCTGTTGTCTGTCATAATCTTATTATATTTATTAccca
cttttttgaaaaattctcttTATAGATTCTCAGAATGTTTCTTAATAATG
TTATTCCTGAA Run BLAST on NCBI transcript from alignment at sc0001911:32026..34391- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038711 ID=TCONS_00038711|Name=TCONS_00038711|organism=Clytia hemisphaerica|type=transcript|length=2366bp|location=Sequence derived from alignment at sc0001911:32026..34391- (Clytia hemisphaerica)
AAAGTTGTGCATAGCACTCCTTATCACACGCCTAAATTACTAAAATTAAG
GTTTTAGGAGTGTGATTGACCACACGCCTGAAATTTTCAAATGATGCAGC
CTGCTTTAGGTATCAGTAACACAGTTGCATAGATAAAAACTCAGTTTGCG
GCTGATGGGGCATCCTGCTGATCATCTGATAATCTTCAGGTAATTTCATT
ACGTAATCTTTATGTGCTTAATTATTTAAGTCATAATGGTGTCGTCCTTA
GAAAATAGTCTTTAGGCACGCTAAGCAGTCTCCCAAATTAGCAAAAAATA
ATGATCCCAGGAGAGTCCTCGCATCGATTCTTGTATTTTCATACATTGGT
TTCGAAATCTTCAGAAAGCAATTATTTAGGTGTTGGGTAGAATGTAAATG
ACTACCAAGGCAAAGGTTTTTTCAATCTGCGGAAACGTTTAGACGGGGGT
ATGGTGGTTCTGTTATNATTGTGAATGTTTTCTGCACACCACGCTGAAGC
TCTAAAGGGATGTGTGAAAACAAACAATCTGACGAATATGCAATCTCGAA
ATCGTAAGGACCGCGTTCGTCTAAAAGGACTGGGAATGACAACAAAGTTG
CGCGATTGTGTTTATGAATAANNTTTCCGCGGGAGGACTATTTTCCTCAG
ATGTATAATTTTCAAGTGCCTTTAGAGGTTTACCGTGCGCGTAAGAAAAT
TATGAACATCTGTTATCAGGTTAGGGGTATGGTGGTTCTGTTATTATCAG
TTAGGGTCAGGGTTGGACTCAAAGGTATTTGTTTGTTTCGATTACTGCTG
TGTCTCGTTGGCGCAACCAGTTAGGCTTCGAGTTTGGAAATCAAGGTTGC
TTGCATTTGGTGGTTCGAGCCAAGGTAAGGGAGTATATTTCAGAAATAGG
TTAAAAAAGTCAAAATATAACTTAGAACAGTTCAAAAACTCAGAATAACA
TCAGAAAGTAGAATGGAAGATAGGAAATAGAGAAAGTAGAGAAAATCCTG
GAGAGTCATTTAGAATCTACCCACGACCAATTATTTATGCCTAATGACTC
TTAGGGGACTTCTTTTTTTGTTTTTTTTAGAGATGAAAAGGATGTCACTT
CATAACATAATGAGATGTGGCCCTCTTGCCCTCTTTCTTGTTTAACAGAA
AAGAGCCAGATCCTGCCAGAGCTTTTATTGGTAATCTGCCATCAGTAATT
GAACTCCACCGCAAGGTTTGATCAAGTTTGTGTAGTCCCAGGAGGTGCAG
TCACAGGAGGTAGGAGCTAGGTGGTCGTTTCTAATTTAATTTGGAAATTC
CAAAAACTTAAAATACCTGGTATTAAATTAAGGGTGGGGAGGACATCAAA
TATACCATTTTAAAACTATTGCATGCTACTAAATTTAGGGTTGAGAGGGT
ATTTATTTCAATTCTTGTTAGTATATATCCCAATTCCTGAATATAACATT
TTGTCAATTTTTGTCTTGATGTTGCAGGATTTTGATGAAAAGAAATTTTT
ATACATGCTTGGTACAGTGTTTTGATACTGAAAATATAAGTTTCTCCATT
TCAATTCTAGGTACTTTCTCAAGGGGTATGCAGTTACCACAAGACATTAT
TAGTAGTATGTGTCTTTTTGAACAATTTTTTATTACAACCCCCTTGCAGT
TTATACTACCATCTGTTAAATCTTTTTCAATTATAACTTTGTATGCAATG
CATGCTTAACCCCCTGCTCTCCCTGCCTTTTCAATAATGTAAAGCAAGTG
CCCTAGTTTTTGATTTTGTCTAATATTTTCAAATTAGTTTGCAACTTTTT
TCATTTCATTTCATTGCAATTTTTTGTCCCACTAAACAATGTTTTCTTTC
AAAAATACAAAAATGTTTTTGCGATCTTTTTATTATTCTTAATGTCTTAC
TGCACTTTTCTTTTACAGATAATCTTAACTGAGAGCTCAGAGGTTACAAA
AATCGCTGGTTTGGTTTTAAAGATGCTAATTACTCAGACAGAAATGTCTA
AGGAACTTAAATTGACGACTTTCAAAATGAATCCAAAGAGAAATGTACTA
TCAAATAATGTTTGGGATCTAACGATTTTTTTGTGATTTTATAGTTAAAT
ACTATTTATTAATGAGGATGAAATTTGTTCGCTTTATAGCTTTATACAGT
ATGGAGCTCTAAAATGAGATGATTTTTGTCGATTATATTAATTGTATTTT
TGACAAAATCATATGCCCATAGCAAAAACTTTCATAGTAATATAATTTTT
TTTTCCTTTGTACATTAGCTGTTGTCTGTCATAATCTTATTATATTTATT
ACCCACTTTTTTGAAAAATTCTCTTTATAGATTCTCAGAATGTTTCTTAA
TAATGTTATTCCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038711-exon-sc0001911-1575043694:34203..34391 | TCONS_00038711-exon-sc0001911-1575043694:34203..34391 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1575043694:33133..33311 | TCONS_00038711-exon-sc0001911-1575043694:33133..33311 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1575043694:32787..32831 | TCONS_00038711-exon-sc0001911-1575043694:32787..32831 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1575043694:32026..32473 | TCONS_00038711-exon-sc0001911-1575043694:32026..32473 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1510915933:34203..34391 | TCONS_00038711-exon-sc0001911-1510915933:34203..34391 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1510915933:33133..33311 | TCONS_00038711-exon-sc0001911-1510915933:33133..33311 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1510915933:32787..32831 | TCONS_00038711-exon-sc0001911-1510915933:32787..32831 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1510915933:32026..32473 | TCONS_00038711-exon-sc0001911-1510915933:32026..32473 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1491911889:34203..34391 | TCONS_00038711-exon-sc0001911-1491911889:34203..34391 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1491911889:33133..33311 | TCONS_00038711-exon-sc0001911-1491911889:33133..33311 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1491911889:32787..32831 | TCONS_00038711-exon-sc0001911-1491911889:32787..32831 | Clytia hemisphaerica | exon |
| TCONS_00038711-exon-sc0001911-1491911889:32026..32473 | TCONS_00038711-exon-sc0001911-1491911889:32026..32473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001911 | supercontig | sc0001911:32026..34391 - |
Blast
The following BLAST results are available for this feature:
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