TCONS_00038706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038706
Unique NameTCONS_00038706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038706 ID=TCONS_00038706|Name=TCONS_00038706|organism=Clytia hemisphaerica|type=transcript|length=973bp
TtctgttattatcagttagggtcagggttggactcAAAGGTATTTGTTTG
TTTCGATTACTGCTGTGTCTCGTTGGCGCAACCAGTTAGGCTTCGAGTTT
GGAAatcaaggttgcttgcatttggtggttcgagccaaGGTAAGGGAGTA
TATTTCAGAAATaggttaaaaaagtcaaaatataacTTAGAACAGTTCAA
AAACTCAGAATAACATCAGAAAGTAGAATGGAAGATAGGAAATAGAGAAA
GTAGAGAAAATCCTGGAGAGTCATTTAGAATCTACCCACGACCAATTATT
TATGCCTAATGACTCTTAGGGgacttctttttttgttttttttagagaTG
AAAAGGATGTCACTTCATAACATAATGAGATGTGGCCCTCTTGCCCTCTT
TCTTGTTTAACAGAAAAGAGCCAGATCCTGCCAGAGCTTTTATTGGTAAT
CTGCCATCAGTAATTGAACTCCACCGCAAGGTACTTTCTCAAGGGGTATG
CAGTTACCACAAGACATTATTAGTAATAATCTTAACTGAGAGCTCAGAGG
TTACAAAAATCGCTGGTTTGGTTTTAAAGATGCTAATTACTCAGACAGAA
ATGTCTAAGGAACTTAAATTGACGACTTTCAAAATGAATCCAAAGAGAAA
TGTACTATCAAATAATGTTTGGGATCTAacgatttttttgtgattttata
gTTAAATACTATTTATTAATGAGGATGAAATTTGTTCGCTTTATAGCTTT
ATACAGTATGGAGCTCTAAAATGAGATGATTTTTGTCGATTATATTAAtt
gtatttttgacaaaatcataTGCCCATAGCAAAAACTTTCATagtaatat
aatttttttttcctttgtaCATTAGCTGTTGTCTGTCATAATCTTATTAT
ATTTATTAcccacttttttgaaaaattctcttTATAGATTCTCAGAATGT
TTCTTAATAATGTTATTCCTGAA
Run BLAST on NCBI

transcript from alignment at sc0001911:32026..33656-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038706 ID=TCONS_00038706|Name=TCONS_00038706|organism=Clytia hemisphaerica|type=transcript|length=1631bp|location=Sequence derived from alignment at sc0001911:32026..33656- (Clytia hemisphaerica)
TTCTGTTATTATCAGTTAGGGTCAGGGTTGGACTCAAAGGTATTTGTTTG
TTTCGATTACTGCTGTGTCTCGTTGGCGCAACCAGTTAGGCTTCGAGTTT
GGAAATCAAGGTTGCTTGCATTTGGTGGTTCGAGCCAAGGTAAGGGAGTA
TATTTCAGAAATAGGTTAAAAAAGTCAAAATATAACTTAGAACAGTTCAA
AAACTCAGAATAACATCAGAAAGTAGAATGGAAGATAGGAAATAGAGAAA
GTAGAGAAAATCCTGGAGAGTCATTTAGAATCTACCCACGACCAATTATT
TATGCCTAATGACTCTTAGGGGACTTCTTTTTTTGTTTTTTTTAGAGATG
AAAAGGATGTCACTTCATAACATAATGAGATGTGGCCCTCTTGCCCTCTT
TCTTGTTTAACAGAAAAGAGCCAGATCCTGCCAGAGCTTTTATTGGTAAT
CTGCCATCAGTAATTGAACTCCACCGCAAGGTTTGATCAAGTTTGTGTAG
TCCCAGGAGGTGCAGTCACAGGAGGTAGGAGCTAGGTGGTCGTTTCTAAT
TTAATTTGGAAATTCCAAAAACTTAAAATACCTGGTATTAAATTAAGGGT
GGGGAGGACATCAAATATACCATTTTAAAACTATTGCATGCTACTAAATT
TAGGGTTGAGAGGGTATTTATTTCAATTCTTGTTAGTATATATCCCAATT
CCTGAATATAACATTTTGTCAATTTTTGTCTTGATGTTGCAGGATTTTGA
TGAAAAGAAATTTTTATACATGCTTGGTACAGTGTTTTGATACTGAAAAT
ATAAGTTTCTCCATTTCAATTCTAGGTACTTTCTCAAGGGGTATGCAGTT
ACCACAAGACATTATTAGTAGTATGTGTCTTTTTGAACAATTTTTTATTA
CAACCCCCTTGCAGTTTATACTACCATCTGTTAAATCTTTTTCAATTATA
ACTTTGTATGCAATGCATGCTTAACCCCCTGCTCTCCCTGCCTTTTCAAT
AATGTAAAGCAAGTGCCCTAGTTTTTGATTTTGTCTAATATTTTCAAATT
AGTTTGCAACTTTTTTCATTTCATTTCATTGCAATTTTTTGTCCCACTAA
ACAATGTTTTCTTTCAAAAATACAAAAATGTTTTTGCGATCTTTTTATTA
TTCTTAATGTCTTACTGCACTTTTCTTTTACAGATAATCTTAACTGAGAG
CTCAGAGGTTACAAAAATCGCTGGTTTGGTTTTAAAGATGCTAATTACTC
AGACAGAAATGTCTAAGGAACTTAAATTGACGACTTTCAAAATGAATCCA
AAGAGAAATGTACTATCAAATAATGTTTGGGATCTAACGATTTTTTTGTG
ATTTTATAGTTAAATACTATTTATTAATGAGGATGAAATTTGTTCGCTTT
ATAGCTTTATACAGTATGGAGCTCTAAAATGAGATGATTTTTGTCGATTA
TATTAATTGTATTTTTGACAAAATCATATGCCCATAGCAAAAACTTTCAT
AGTAATATAATTTTTTTTTCCTTTGTACATTAGCTGTTGTCTGTCATAAT
CTTATTATATTTATTACCCACTTTTTTGAAAAATTCTCTTTATAGATTCT
CAGAATGTTTCTTAATAATGTTATTCCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023227XLOC_023227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038706-exon-sc0001911-1575043694:33177..33656TCONS_00038706-exon-sc0001911-1575043694:33177..33656Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1575043694:32787..32831TCONS_00038706-exon-sc0001911-1575043694:32787..32831Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1575043694:32026..32473TCONS_00038706-exon-sc0001911-1575043694:32026..32473Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1510915933:33177..33656TCONS_00038706-exon-sc0001911-1510915933:33177..33656Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1510915933:32787..32831TCONS_00038706-exon-sc0001911-1510915933:32787..32831Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1510915933:32026..32473TCONS_00038706-exon-sc0001911-1510915933:32026..32473Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1491911889:33177..33656TCONS_00038706-exon-sc0001911-1491911889:33177..33656Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1491911889:32787..32831TCONS_00038706-exon-sc0001911-1491911889:32787..32831Clytia hemisphaericaexon
TCONS_00038706-exon-sc0001911-1491911889:32026..32473TCONS_00038706-exon-sc0001911-1491911889:32026..32473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001911supercontigsc0001911:32026..33656 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157501	0.100684	0	0	0.515799	0.506954	0.890392	0.723018	1.2828	0.558527	1.23354	1.46065	2.64697	1.60843	0.684529	0.233324	0.099586	0.0735485	0.713417	0.171912	1.08386	0.983111	0.00278871	0.440828	0.227049	1.36032	0.530607	0.0933127	0.325003	0.971243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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