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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038696 ID=TCONS_00038696|Name=TCONS_00038696|organism=Clytia hemisphaerica|type=transcript|length=2667bp
CCTACCACAACACGTGTGTGCGTTGGAATGATGATTGTGGGTGTACTAAA
ATCCCTGAAATCAAATCGAGAATAACTGCAATGCTGGATAATCAAGTTAT
CAATACCTTTATGTGTGAGATTTACAAAAGAACAAATCAACTCACGaaaa
aggcaTCTAATATGTTAAATGGGCATCAAAAATCTGCAAGGAGTGAACTG
ATCCATGTCAGGGTAACTGATGGCAGATGTGGAGTATTGACAAAGatgaa
tttgttttcaaaaacaataccTGATCAAGTCGTAAGCGAAAACTATTTTA
CATTATATACAGTGTACCCTTAAAAAGTGTAAtgatatattatatattat
tatgGTCATGGTTAGGAAGAGTATGGATTAGGTACATTTTGATTTTAGTC
TGACTTTTGGTTAAAATCTACTTTCTTTTCTAACATAATGACACCGCATC
GAAGTGCTCAACATGATGAGAAACAGCCATATTTTTGATAGGGAACTGGC
AAATAACTCTCTAGTTAGATTATTTAATAAGTCTCTAGTTAGAGAGAAGA
AACTTTACCGAATTCGGCGGACTACCctaaaaatttcctaaattcGTCAA
ATTAACTTTTATATCTAGATCATTGGCGAAACTTAattctaattattttt
ttaacacgGCTTTTTTCTCGATATATACAGGTGGTTTTAAATCATTTCCA
GCCCCTGGACTTTNCAAGATCTTGAAGTGTGGTTTATATCCCTCAAAGCT
CtaatcaaaaagacaaaatacttTGATCTTTCACAgagttaaattatttt
ttgagtaATTTGTGTAAATTCAAGAAACACACCCCTATTAAACCTTCTCC
TGAATATTGTAAACGGAACATTTGGCGACTCTTCTTTATCCATCACCTGA
AAGCCATAACAAATACCTAAAAGATACGCATTAGTTTTCATAGATTGTCT
GTATTTACTTGTTTGCACCAAAACATTGAAACGACTACAATCAAGTTGTA
TCCATACATAATAACTTTTAAATGTGGTAGGCAAAATGATCATTTATAAA
AAGAATGGGAACACAAAAAATTTTACCGTGTGGGCAGTAGATAGTGAATA
TACCAGATGTCAAGTTTGGGTGACCTTTATAATTTTTGCGACAATTGCcg
tattttgtatttattgcATCCTGCTCGTAGCTGCCTCTCGGTCGCAAGGG
TGGAAGATTTGGAAAGCTTAAATGGAATACGTAATAGTAATTTGCAATTT
AATAAAAGCAAATGTAATCAGTCAATTAAGATCAGGGATTCCAAAGCTTT
TGGTAAAGGTCACCACTAACTTAAATGGAAACCttataaaggaagaaatt
taagaaactcTAAAGAATTCTTTGATTTACCTCAGTGTGAACATCTCCTT
CTTTAAGGCGGGATCCCTTAACTCTTTTCCTCATAGAGTGGACAGGAGAT
TAGAGGTGggataaagtaaaaataaggGGATTGGTTTGAAGTATTTAGTT
TAGATCACAAAATGGCAAAATGTTTATCTGCGGCACCGCCATTTTACACC
CATTTACCATACAAATGTGAAAATAATTTGGTATAAAACAGTAAatcttt
aaaagatttttaaaataggGAACGTGCCTTTATTTTTGGGAAGGATGTTA
AATGGGGTTACATATAATGTTAAACTTCAAAACAGATACTTTTACCTGCT
GAGTTCATTCTCTTCGATAAAAGATCCACCGCTGTATACATCGGAGGCAT
AACGGTAAGGTATCCCAGTCTTGTCTGACAGGTAAAGTAGTAACCCTTTC
CAGTGTTCTTCTGGGAGACATGTTTCCAAATTGCAATCAGTGAGGATGTT
AAAAAGCAGAGGAAGCTTGAGTTGGAATTTCTTCATTAACGCAGCATCAC
TCTTACACTTTGGTTCAAGCATCCTTAAACTCAAATTCAAATCGTTTTCG
CCAAAGTAGGAACAGACTGGACTTGAAGAGTAAAggcacttgaaaaaaag
tttgatcgATTTTGGCAGATCATCACCGAACGTGTCACGAGCCCACTTTA
ACGTACGGAATATGACGGGGTAGATAATTTCAagctttttggaaaattcc
atCGACGCATTCTTTTTGGTTACCCATTCCTTGAATGAGTCCCGTAAATC
TTTGTCAGCGATAGCCAAGCGATCAGCATGTTTCCTAGCAGTATAGAGTG
AGATTTATTTAGTATGAAGAAGCATAAAAAATAAGCTGATTCACTGATGC
TTAAAAGCTTCAATTCATACAGTCacaaaacttttaacaaaactgtcgtt
tttttataaaatgctGAGATACCGTAGTGCCATAGCAAATTCGGTAAAAT
CTAAATAAACAAGAACTCACGAAAACTTTTGGGTACATAATTCGGATGGA
TTTTCCTGTAGCACCAGGGCCGAGAATTTCTTCTGATGACCCAAACTTGT
TGCATCACATATAATTGCAGCAGGATCTTGTTTGCAGATTTTACaaatcg
atccttcgttgaagTCGATGTCAAGTAGCTCCAAAAAGGAATACCACGAA
TCTTTGAAGTCTTTGTACGTCAGCTCGCATTTTTCGTGGCCAGAGCTTTT
CTGACTCAACGAGAAAACTTCGTAATAGCCATGAAGTGTACAACTAAAAA
TAAAGGTGTATGAAATT Run BLAST on NCBI transcript from alignment at sc0001911:23259..27457+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038696 ID=TCONS_00038696|Name=TCONS_00038696|organism=Clytia hemisphaerica|type=transcript|length=4199bp|location=Sequence derived from alignment at sc0001911:23259..27457+ (Clytia hemisphaerica)
CCTACCACAACACGTGTGTGCGTTGGAATGATGATTGTGGGTGTACTAAA
ATCCCTGAAATCAAATCGAGGTACAGTATAATCATCCANAAAAACTCTTC
ATCGCATGAAAAGACAATTGATTTTTGATAGATGAAAGACtaacttttta
aacaaaaagtttatatttaTTTCACTTCATAACACTGTGAGAAAGGGTTA
TGTAGGTGTAACCTGACTCTCTCTCCATCCGTATAACAGAAAAGAGTTAG
ACTCTGAACCACTCTTTGTTTGTCTCGGAGAAACATAATGAAAAAAATTA
AAAAAATTTCCCCCCCCCCCCCCCATTTTATAAAGCTGACTTGTTCTGAT
GACTGATGACTGGGTTCCAATAAATCTTCATCTTGATTCAATTCAATCGT
AGGTATCAACTGATAAACTTATCTTTTGACTCGACTTGACAAAACAGAAA
CTTATTGAGACACGACTGTACCGTACGAAATTGACTGAACACAATATTGG
TTTATGTCTTATTTATGCTCGCAAAATCCTAACAGGTTTCATTTATATTT
TTTGTCAAAATTTTTACTCTTGAATCAGCCTTTTTTTACAAATATTAACA
AAGTCCAATTTCAAGTGTGTATTCTAACATTTCTGGCTATCTGTTCTTGA
TGAAAACCAACGCATCAACTTTTTTAAGTCTTGAAATAATTTTCAATGAG
AATAGAAATGTATTTAACGGTGATTTTTGTTACTTCTATTCCAACTGTTA
TAGCAATGGTATCCTTGATTGGGCTGGTCGTAGGGCTCAATAAAAATCTG
GCAGTTCAAGACGGTGAAAGCGTGTACCGACTGACAAGGCAAGAAGACAT
TCCATGCGACATTGCCATTTTATGCGGAAATGATCAATACGTGTACATGG
CTGATGTGGATGAATTTGACGAGACAAAATGTCGAAGTCATAATATGTTT
TGTTTCGATGATAGTGAAGAGGACGTCATTGTGTGCCCAAATTGCCTCCT
CACCTACCACAACACGTGTGTGCGTTGGAATGATGATTGTGGGTGTACTA
AAATCCCTGAAATCAAATCGAGGTACAGTATAATCATCCAATAGAGGAAA
CTTAAAAAGGCAGATCTCTGATTAGGACGTAATGGTATTTTCCGCTTGCT
AGTCAAAACCTCATcagaaacttttcaaaataggTACACTTAATTAGATA
AGGTTTCTACATGGAATTTTGTTGGTCAGAAGCATACTTTTTCCTCTCAA
TTTATCATACACAACAGACATAAACTGgttaaaaaaggtcaaaaataagA
GTGTTTTATCTTATTACAGTAGTTGACGCtcctaattcgatcttcaaggg
aaattggaaaaaaaaatgaattaatttaCTTGAATCCTAAActagaaagt
tttaaaagtttatgCCCTTAAACTATCTACTTTCGTCTTAGAATAACTGC
AATGCTGGATAATCAAGTTATCAATACCTTTATGTGTGAGATTTACAAAA
GAACAAATCAACTCACGGTGAGATATTATATTACTAGTCCTACGCTATAT
ACGCTTAACAATCGGGCTTTGTGGTTTCATATACTATCAGTCGAATGTAA
AACATGATCTTGGTCGCTCATGTTTACTTGATGcggatttgaaatatttt
tttaaaaatagattaacttatttttcagaaaaaggcaTCTAATATGTTAA
ATGGGCATCAAAAATCTGCAAGGAGTGAACTGATCCATGTCAGGGTAACT
GATGGCAGATGTGGAGTATTGACAAAGatgaatttgttttcaaaaacaat
accTGATCAAGTCGTAAGCGAAAACTATTTTACATTATATACAGTGTACC
CTTAAAAAGTGTAAtgatatattatatattattatgGTCATGGTTAGGAA
GAGTATGGATTAGGTACATTTTGATTTTAGTCTGACTTTTGGTTAAAATC
TACTTTCTTTTCTAACATAATGACACCGCATCGAAGTGCTCAACATGATG
AGAAACAGCCATATTTTTGATAGGGAACTGGCAAATAACTCTCTAGTTAG
ATTATTTAATAAGTCTCTAGTTAGAGAGAAGAAACTTTACCGAATTCGGC
GGACTACCctaaaaatttcctaaattcGTCAAATTAACTTTTATATCTAG
ATCATTGGCGAAACTTAattctaattatttttttaacacgGCTTTTTTCT
CGATATATACAGGTGGTTTTAAATCATTTCCAGCCCCTGGACTTTNCAAG
ATCTTGAAGTGTGGTTTATATCCCTCAAAGCTCtaatcaaaaagacaaaa
tacttTGATCTTTCACAgagttaaattattttttgagtaATTTGTGTAAA
TTCAAGAAACACACCCCTATTAAACCTTCTCCTGAATATTGTAAACGGAA
CATTTGGCGACTCTTCTTTATCCATCACCTGAAAGCCATAACAAATACCT
AAAAGATACGCATTAGTTTTCATAGATTGTCTGTATTTACTTGTTTGCAC
CAAAACATTGAAACGACTACAATCAAGTTGTATCCATACATAATAACTTT
TAAATGTGGTAGGCAAAATGATCATTTATAAAAAGAATGGGAACACAAAA
AATTTTACCGTGTGGGCAGTAGATAGTGAATATACCAGATGTCAAGTTTG
GGTGACCTTTATAATTTTTGCGACAATTGCcgtattttgtatttattgcA
TCCTGCTCGTAGCTGCCTCTCGGTCGCAAGGGTGGAAGATTTGGAAAGCT
TAAATGGAATACGTAATAGTAATTTGCAATTTAATAAAAGCAAATGTAAT
CAGTCAATTAAGATCAGGGATTCCAAAGCTTTTGGTAAAGGTCACCACTA
ACTTAAATGGAAACCttataaaggaagaaatttaagaaactcTAAAGAAT
TCTTTGATTTACCTCAGTGTGAACATCTCCTTCTTTAAGGCGGGATCCCT
TAACTCTTTTCCTCATAGAGTGGACAGGAGATTAGAGGTGggataaagta
aaaataaggGGATTGGTTTGAAGTATTTAGTTTAGATCACAAAATGGCAA
AATGTTTATCTGCGGCACCGCCATTTTACACCCATTTACCATACAAATGT
GAAAATAATTTGGTATAAAACAGTAAatctttaaaagatttttaaaatag
gGAACGTGCCTTTATTTTTGGGAAGGATGTTAAATGGGGTTACATATAAT
GTTAAACTTCAAAACAGATACTTTTACCTGCTGAGTTCATTCTCTTCGAT
AAAAGATCCACCGCTGTATACATCGGAGGCATAACGGTAAGGTATCCCAG
TCTTGTCTGACAGGTAAAGTAGTAACCCTTTCCAGTGTTCTTCTGGGAGA
CATGTTTCCAAATTGCAATCAGTGAGGATGTTAAAAAGCAGAGGAAGCTT
GAGTTGGAATTTCTTCATTAACGCAGCATCACTCTTACACTTTGGTTCAA
GCATCCTTAAACTCAAATTCAAATCGTTTTCGCCAAAGTAGGAACAGACT
GGACTTGAAGAGTAAAggcacttgaaaaaaagtttgatcgATTTTGGCAG
ATCATCACCGAACGTGTCACGAGCCCACTTTAACGTACGGAATATGACGG
GGTAGATAATTTCAagctttttggaaaattccatCGACGCATTCTTTTTG
GTTACCCATTCCTTGAATGAGTCCCGTAAATCTTTGTCAGCGATAGCCAA
GCGATCAGCATGTTTCCTAGCAGTATAGAGTGAGATTTATTTAGTATGAA
GAAGCATAAAAAATAAGCTGATTCACTGATGCTTAAAAGCTTCAATTCAT
ACAGTCacaaaacttttaacaaaactgtcgtttttttataaaatgctGAG
ATACCGTAGTGCCATAGCAAATTCGGTAAAATCTAAATAAACAAGAACTC
ACGAAAACTTTTGGGTACATAATTCGGATGGATTTTCCTGTAGCACCAGG
GCCGAGAATTTCTTCTGATGACCCAAACTTGTTGCATCACATATAATTGC
AGCAGGATCTTGTTTGCAGATTTTACaaatcgatccttcgttgaagTCGA
TGTCAAGTAGCTCCAAAAAGGAATACCACGAATCTTTGAAGTCTTTGTAC
GTCAGCTCGCATTTTTCGTGGCCAGAGCTTTTCTGACTCAACGAGAAAAC
TTCGTAATAGCCATGAAGTGTACAACTAAAAATAAAGGTGTATGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038696-exon-sc0001911-1491911889:23259..23328 | TCONS_00038696-exon-sc0001911-1491911889:23259..23328 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1510915933:23259..23328 | TCONS_00038696-exon-sc0001911-1510915933:23259..23328 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1575043694:23259..23328 | TCONS_00038696-exon-sc0001911-1575043694:23259..23328 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1491911889:24700..24775 | TCONS_00038696-exon-sc0001911-1491911889:24700..24775 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1510915933:24700..24775 | TCONS_00038696-exon-sc0001911-1510915933:24700..24775 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1575043694:24700..24775 | TCONS_00038696-exon-sc0001911-1575043694:24700..24775 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1491911889:24937..27457 | TCONS_00038696-exon-sc0001911-1491911889:24937..27457 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1510915933:24937..27457 | TCONS_00038696-exon-sc0001911-1510915933:24937..27457 | Clytia hemisphaerica | exon |
| TCONS_00038696-exon-sc0001911-1575043694:24937..27457 | TCONS_00038696-exon-sc0001911-1575043694:24937..27457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001911 | supercontig | sc0001911:23259..27457 + |
Blast
The following BLAST results are available for this feature:
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