TCONS_00038657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038657
Unique NameTCONS_00038657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038657 ID=TCONS_00038657|Name=TCONS_00038657|organism=Clytia hemisphaerica|type=transcript|length=450bp
CTCCCTTCTTTCGCTTTCTTCACACTCCTGGATCTTCTTTGGATCAGTTT
CCATTGACATGTATTCTGTGTTTGTAGCTCTAAACTTAAGGTACGTTGTC
AACATAGTCTCTTGTAACGCAAACGCATTTTGAACATCTCCTTCGTTGAG
ACAAATGAGAATTTGGTTAATGACTCTTGTGAGGCTAGAAAGCTGGGCTC
TTCTGGAATTTCGTAATGATACGAGTNTCTTGTAACACAAACGCATTTTG
AACATCTCCTTCGTTGAGACAAATGAGAATTTGGTTAATGACTCTTGTGA
GGCTAGAAAGCTGGGCTCTTCTGGAATTTCGTAATGATACGAGTTTGTTT
AGCTCATACATCTGTGGATCTTCAGCTGGTTGTTGACCTGCAATTCTATT
TGATCTCCTCATTGTAACAGTCTTTGATGCAAACAGAATCAGTAGTCAGA
Run BLAST on NCBI

transcript from alignment at sc0001904:35639..36088

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038657 ID=TCONS_00038657|Name=TCONS_00038657|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at sc0001904:35639..36088 (Clytia hemisphaerica)
TCTGACTACTGATTCTGTTTGCATCAAAGACTGTTACAATGAGGAGATCA
AATAGAATTGCAGGTCAACAACCAGCTGAAGATCCACAGATGTATGAGCT
AAACAAACTCGTATCATTACGAAATTCCAGAAGAGCCCAGCTTTCTAGCC
TCACAAGAGTCATTAACCAAATTCTCATTTGTCTCAACGAAGGAGATGTT
CAAAATGCGTTTGTGTTACAAGANACTCGTATCATTACGAAATTCCAGAA
GAGCCCAGCTTTCTAGCCTCACAAGAGTCATTAACCAAATTCTCATTTGT
CTCAACGAAGGAGATGTTCAAAATGCGTTTGCGTTACAAGAGACTATGTT
GACAACGTACCTTAAGTTTAGAGCTACAAACACAGAATACATGTCAATGG
AAACTGATCCAAAGAAGATCCAGGAGTGTGAAGAAAGCGAAAGAAGGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023217XLOC_023217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038657-exon-sc0001904-1491911889:35639..36088TCONS_00038657-exon-sc0001904-1491911889:35639..36088Clytia hemisphaericaexon
TCONS_00038657-exon-sc0001904-1510915933:35639..36088TCONS_00038657-exon-sc0001904-1510915933:35639..36088Clytia hemisphaericaexon
TCONS_00038657-exon-sc0001904-1575043694:35639..36088TCONS_00038657-exon-sc0001904-1575043694:35639..36088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001904supercontigsc0001904:35639..36088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.143553	0.198677	0.394048	2.18374	3.22522	2.48155	3.36652	1.08607	1.28911	0.502453	1.58935	0.19581	0	0.167182	0	0	0.142406	0.17675	0.243524	0.349006	0.532867	0	0	0.47416	0.423177	0.201855	0	0.244857	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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