TCONS_00038653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038653
Unique NameTCONS_00038653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038653 ID=TCONS_00038653|Name=TCONS_00038653|organism=Clytia hemisphaerica|type=transcript|length=609bp
tcagaaaaaaaaactaatggatattataatataaacaaataagTCGTCAT
ATAACAACACAATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAG
AATGAAACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGGC
GATGTCCATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAGAATATG
CTCAACAACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACT
AAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTCAACAAGAAATCGT
CATGCTTAGATTAAAGGTATCGTCTAAATCAGATGATCAAAGATTGACAG
TCGAGCAAATGCAGTCAGATACAGAAAGCAgtaccaaaaactcaGTGGTT
GAATTCAAAACCCATGGAGACTTCCTTAGAACAGTTTTGTCGATCGGGAA
TTGGTATGATCGGCTGCAAGATGACGCGAGTTGTTTGACGACTATTAAAT
CATCTTTTAAGTATGTATTAACAGATCTCGAGGCTGCATTAAAAGAAGTT
GCATTAAATGAACATGAAATTTCACTCGTGGAAAACTCTTCAAAGTATTT
ATCAGgtaa
Run BLAST on NCBI

protein sequence of TCONS_00038653-protein

>TCONS_00038653-protein ID=TCONS_00038653-protein|Name=TCONS_00038653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MDSSTTKPSMEEENETQRKAFAETLKVALAMSIIRSKPEGVTSKEYAQQL
AIRLKETDSSWKTKYKDMETVLKKAQQEIVMLRLKVSSKSDDQRLTVEQM
QSDTESSTKNSVVEFKTHGDFLRTVLSIGNWYDRLQDDASCLTTIKSSFK
YVLTDLEAALKEVALNEHEISLVENSSKYLSG
Run BLAST on NCBI

transcript from alignment at sc0001903:14908..26674-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038653 ID=TCONS_00038653|Name=TCONS_00038653|organism=Clytia hemisphaerica|type=transcript|length=11767bp|location=Sequence derived from alignment at sc0001903:14908..26674- (Clytia hemisphaerica)
TCAGAAAAAAAAACTAATGGATATTATAATATAAACAAATAAGTCGTCAT
ATAACAACACAATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAG
AATGAAACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGGT
AAGAGAGAACTTTGATTTTATTTTGCATGTTATTAACAGTGACCCTTATT
GATCATTCATCCAACGGAAGACGTCTTGTTCATCATCATCTTTCGACCGC
GGTCGAGATGATGGATTCCACCCTCTGGCGCCAAGAATCGCGGTCGCGCA
TGGCAGTCTCCAGGTCACTATAAAGAAGTCCNNTCCAGGTCACTATAAAG
AAGTCCAGTGTCCCTGCTAACTGCGTCAGTAAAAGTTAACTTTCTCGATC
TTTGAACCAGCCGCTTGGGTTTCCAGAGTAAGAAAGAGGAGATGACTTCT
GTGGATGCACGAAGGCAATGACCAGCAAACTGAACACGTCTAGCCTTTAA
GATGTTTGAGATAGGCTTAATCGAACCATAGATGGTGTTTTTAGTGGGAT
GATCGCGCCAGGAAAGATTTTTAACTCTTCTTAGAAGGTGTGTGTATGTT
CCATCGAGTTGTTTTTCTAATATACGTGTGATACACGTTTCCGAACCATA
AAGAAGGATAGGTTCTATGGTGGATTTAAAACTTTAATCTTAAGGTTAGA
GTCAAGAAGAGAAGATGTCCAAATTTTGTGTAGTTTGTTACACGCACTCC
AGGCAAGTGCTTTGCGAATCTTAAAATCTTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGGCAGTACTCAACTAAC
TCGAGAGATATCTCCTTAATTCAAGAACTAAGCAGAAGAGGGACAAAAAC
CAGATTAACTATTAGATGCTAACTGCCTAGTGGCCCCTATCACTCTACCT
GCAACAGAGTGAGATTTAAAAACTGGTTTTCTCCAGCGTCTTGTTACTCT
ACCCTGCATTACAAAAGTAACAAAAAGATTTTAAACATCATGCATGGCGT
TCTTTAATTTACCTAGCAAGCATGCAACAACTTCGGTTTTTTGGGGCTCA
ATTCAACATTTCGACGTCTCTTCAAAATTTCAAAATAAAGGAATATTTGG
GTGAGAAAAGAAACACGAAGATAGACGAAAATCAACCATGGCACAAGTTT
AGGAATTCGGGAGCTTGTTTGTTACTCCTACCTTTTACCTCCTTTTTTAG
ATTTAGAATGCCATGGTGAGTTTATGTTGAAAAGCTGTAACCTTTCAATA
ATTTACAGTGAAAAGTTCAACCATAAATTCATCGAAAACGTCAAGATGAT
TTCTTCTCGAACATTTTTCCGGTGTGTCTCTTGATGAAGTTGAAATTTCA
CGCAAAAAGTCATGGTCAATCGTTCTTATTTTTTCCTGTATCTTGACAAT
TTCAACCAGGGCCTTATTGATTTTATTTCCGAGTCTATCAAATACACATT
TTTCCGGTTAGCCGTTTTGTATGAAAAGTCACCAAAATTTCGAGTAAACA
AACCATCCTATTTTAGCCAATGAGATGGTTTGTTTAGTCGAAATTTTGGT
GACTTTTTATACGAGGCAGCTAACCGTAAAAAGGTGTATTGTCAACTTTT
CCACCATAGGCGATGTCCATCATAAGAAGCAAACCAGAGGGTGTGACATC
AAAAGAATATGCTCAACAACTCGCCATCAGACTCAAAGAAACGGACTCAT
CCTGGAAAACTAAGGTATATTGATGGTTCAAATATGGAATATAGTACTGG
GCGATACAAAAATACTTTGGACGTTTGCAGGGTAATATAACATGCTAGAC
GACTAATTCCGAATTATAGAAAATCAGTATAAAATTAATGCAAGGGACAT
TGTAGTTTATACAAACTCATATTGTCCCGTAAAAATTATCATATTATCAT
ATAATACACATATTACTGTATTACACTAATTATAAACGACTCCAGACTCC
AGTCTAGCAGGGTAGCTATACCAAACAAAGTCTATACTGAGCTAAGAATT
ACATTCATTGGAAAGAGGATGTCTAGCTTAGCTGCCAAGTAATTGCCAAT
ATAAGCTATTTCAAAGTTTTCCAAAGGTGTAAAGATACACTGACATAGGG
TTATAGTTCGAGTCGAAATTTAAGTTATAAGACTATCCTCTTTTTGATTA
AACTACAATCGGCGCTGAAATATATTGTCAATTTTTGGTATTTTAACGTT
TTTCAGAATTTAAAGCTCGGGCAAGAATTGCAGTTTCAGTACTTTCACTT
TGTTTCATTGGATTTTTCTATTTGGGAGGGGTTAATAAGTGGCTTCCAGG
CTATATTCTCAGCCTTATTGGAACATTTTTTGAACTTTTAGATTCTGAGA
TCCCAAGGTCTAAGTCTTAAGTCTAATGTTAAAAGTCAGAGTTAAAACTC
TACTTTCCAACTGTGCTTCAAAGTACTTAAAAATCACTTGTGGTTTTAAA
GTTTTGAAGGGATTCCCCTTTTCTACCAAATATTTCGGTGCCAATTTTGC
AAGATATCGTTCGACCTGAGCGAATCATCAAAAGTTTTGTGAGTCACTCG
ACGTACTCTTTCAAATTGGCCTCTGAAAAAGAGCTTTTATGACCATGTTG
TAACTTAAAATTTTAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTC
AACAAGAAATCGTCATGCTTAGATTAAAGGTATCGTCTAAATCAGATGAT
CAAAGATTGACAGTCGAGCAAATGCAGTCAGATACAGAAAGCAGTAAGTC
TGAAAATGTAATATAAGAATAATATGGAAAATTGGAATATTAGAGAAATA
GCCTGCACCCCCCCCCTATATTGAAGTGTTGTGTAAAATCCAGGGTGGTC
AGTAAAATGAGGTGGAAAATCCAGGGGGTCACCTTTACCAAAAAAGATCT
CCTCAAAATAGGGGGTACAAGTTTTTTCCGGAATAGCCCATTTCGATCAG
CCGGATATACTTTTCAGTTGTTGCACCCTAAAGCCTTATCCGGGTCATCA
ATGACGGATTGTTGATGAAACTGATGGTATCATAGTTTTTGAGGAACGGC
CGTTTGAAGTTTTGACCCCTGACCTATCCCTGGCAAGTGGTCCATATTTT
GAAAAATTGAGGAACATCTATAGAGGGTATTAATTAATATTTTTGATAGG
TGGAAGGGGATATACCTACATGAAAAGATTTTCCCTTCATGCTTTCAGAG
TTTTGCCTGGCAGATCGCATTTTGATCACCGATGTTTAATACTCTTAATG
ATCAATAGCAATCATCTATTTCGTTTAGGTACCAAAAACTCAGTGGTTGA
ATTCAAAACCCATGGAGACTTCCTTAGAACAGGTTAGAGAGCTAGATGCA
TCCCTTTTCCAAAATAATTTTGTTATCAATCTCTGCATCACAGGACATAA
TAGCGAGTTTATGTATGTGTGTTTTTCTGCAACGGAAACGGTAAGGTTCT
AACTTGACTAGATCCAGACCAGCTGAGACGACGGTAAATCAGCACTTTTA
CCGTCCTCGGTTTTGCGGGTCAGAATTGCGGGTTATTCCAAATCGCTTCA
GACACTCTACCGTGCTCAAAAGTGCAAATACATGTTAACTCGCTAATGTA
GTATATTACTCTAAAACATTAGGCTATTCATGATATGCACCACTGGAGAG
TCTTCTGAGATTTTTAAATTTTCCACCCAATACGTCACTTAAACAATAGA
AAAAGTGACGTATTGGGTGGAACAAAAACAGAAAAGTTGCATAATTTCGT
GAAGTCGTTGCAGTGGTGCATATCTATCACTCCCAATCTAATTACTCCAA
AGAAGGTCAAAATCTCCAGTGCTGGAAAAATTATGGCAATATCAATCATG
ATAATAACAGAAGTGAGTCACGAGAGCCAAAAAAATTCTTGCTGAAATCG
ATAAGTAGGAATCTAAGTTTCTCGGAGTTTAGTCAGACAAAACTTGAAGT
TGATAGCACAACTAGAGCTTTTTTTGGACCACCCTGTATTAATTATACTA
TAATGTCAAATATCCTCTATATTTTTATTAAAATTAAACCGAATCTTCTT
GATGACGTTATTGAAAATTTGGCGTGATGGCGTGAATTAAGCTGGACGCA
GCTCTCACCTCTCCCAGAGGAAGTGGTAAATAACCTCAACAATGATACTC
GAGTAAAATTTCCAATAGTGTGAACAGCAGCAACGTCATTTTACAAGCAA
AAGATGCCTTCTAGCTTAAAAAATCACCAGGATCCTGCCTTGACAAAAAT
CGCTATCTTTGTTTATGTTTTGCAAGTGTGCAAAAGTGAAAGTAGCAGCA
ACGACAGAAAAAAACAGTGAATTGATAATATGCGAGTTGCGAGTTGGTCC
TGCGAGTTGCGAGTTGCTATCAAATATGCGAGTTGCGAGTTGGTTTTTGC
GAGTTGCGAGTTACGAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAATAAAAGTGCGAGTTACGAGTTGAAAATTTCACGTTAAG
ACATCAAAATCGCGAGTTGCAGATTAAAATCACGAGTTGCAGATTAAAAT
CGCGAGTTGAAAATTAAAATCGCGAGTTGAAAAATCAAAAGTGCGAGTTG
AAAATTAAAATTGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTAAA
ATCGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTAAAATCGCGAGT
TGAAAAGTCAAAAGTGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATT
AAAATCGCGAGTTGCAGATTAAAATCGCGAGTTGAAAATTGAAATCGCGA
GTTGCAAATTAAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATT
AAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATTAAAATCGCTA
GTTGAAAATTGAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATT
AAAATCGCGAGTTGCAAATTAAAATTAACAGTTGAAATGAAAATTTGCTT
TCGTCCTTTCTTAATTATATGAATTTCGCATTTTTGCAATTTGATTATTA
TATTGTCTTTATTTTGCAGACATACGGTATATTTTGAGGGTAAAGAAATA
TTTTTTTAGACCATCAAGCGTCTGGTTTTCTGAGTTACGATAGTAAATAG
TGCTTATCCATATGAAATAATGCGCACGCGTGCGGGGTTTAAAAAGCAGC
ATGGCACAGCACAGGGCGGGGGTTTATTCGTGAGTGTACGTGTGTGTTGA
TAGCTTAATAGGTTAAGCAGCGTCCAGCGCGGAATTCGAAGGTTAACTAC
TGGTTTTTCCAGAAAAAAGTCCAAACTCCCACTGTTGAGAGGAAGTCAAC
GCCACTCTATTTTTTTCGGTTCAAAAAAAAATTATTTTTCCCGGTATTTT
GATTTTATTACGGGTAAACACTCAACTTTTTCAAACATTCTTTTATTAAG
GCCCGATCTACACGACACTTTCGAATGTTCGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATGTTCGAATGTTTTCATTT
CGTCATTTCGAATGTTTTCGTAATTCGAAAAGTAAGTGGCTTTATAAAAA
TCGAACGCTCAAAACGTTCGAAACCAGAGGGGGGCGGGTTATATTCTCTT
AATTTACTATGGATTGCTCCACGTTTTGGTCTATTCGAAAAACCACAAGC
GATTATTCAATCAAAAGTGTTCGGATAAACACGGTGTCAAATTCATTATA
TAAGTGTAGTCGGTCAGTGTGTAAAACGGGAAACAATAATTACAAGGTCT
CAAAAGAAGGTTGTCTAATGCTAATTCCGGTATTTTAAATTTTCCGGGGG
TTTTGTTGTTTGGAATTGCTTAGGTCAGGATTGCTAGTAACGGCTTGTCA
CTGTGCCGGGTGCATACTCGGCGCGCAGTGTTGCTAGTAACGGCTCGAAT
TTCAGTCAGGTTAAAAAAGGGGCAATTTATTTACTCGTATTATAATAACA
TTACTCCCGTCTTTTTTGTCATTCTATATAAGTATTTTCAAATTTTATAT
TTTGCTGTGCGAGTGTGGCTCAATGGATAGTGTGCTGGGTTTCTGTTCAG
AAGCTCTTTCATTTGGTGGGTTCGAACCATTGAGTTTCAAGCCCGAAGGG
CTAGAGGTCAATCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTAA
AATATGCGCCGTATTTTTGNAATTTAGCTCCTGGATTTTTTGAACAGATT
GTCCGCTGGAAAATTGTATGTGTTTTTCTTTAAAATGTGCTCCTGGATTT
TAAAAACAGATGTCTTTAAGGCGACCCCTGGATTTTACCTGTGTGTTTTG
AGAAAAGTCTCTCCTAGATTTATCCATAATATTTTCTCTCCTGGAAAAAA
TAACAGATATTTCAAAAAAATCTGCCGGCGGCTGCTCTTGTCCTACCAAG
GAGATTGACCTCTAGCCTTCGGCTTGAAACTCAATGGTTCGAACCCCGGT
CGGGTCGATAATTCAAGGTCAGTTAAAACACTCTAGAATAGTCAGAAAAC
ATAGTAAATGAGTTGGAAAAGTCACCAGGGGGTCAGAAAGAAGCCTCAGA
GAAGATAGGCAGAAATGAAAAGTCGATGTCGGAATGAGCAATAGACAACC
TTCGTTTGAGACCTTGTAATTGGGATTCTCAAAGTAGCGCAAGGACATGA
CAGAACGAATGAGAGCTATCGGGCCAATGCTCACAAATGAACGAGAACAA
CTATTATTTCCAATCTAGGATTTTCTTTCTTTATTCTGAATCGTAAATAT
TTATTTTACCAGCTACTATATGAAATTTTAAGATTCGAATTACACGAGTT
TCACAGTATAAATAGTTTTCTATCAGCTTTTATGCTTCCAATACAAAACT
TGTCTCCAATTTTGAACCTAGACATGTCGCCCTAACAACAAAATTCTCCA
CACTGGTTGAAACTCACACATTAAAATTTGCAACTCGCGATTTTAAATTT
CAACTCGCACTTTTGATTTTTCAACTCGCACTTTTGATTTTCCAACTCGC
GATTTTAATTTTCAACTCGCGATTTTAATTTGCAACTCGCGATTTTAATT
TGCAACTCGCGATTTTAATTTGCAACTCGCGATTTTTATGTCTTAACGTG
AAATTTTCAACTCGCAACTCGCACTTTTATTTGTTTAAAAAAGCAACTCG
TAACTCGCAACTCGCAAAAAGCAACTCGCAACTCGCATATTTGATAGCAA
CTCGCAACTCGTAGGACCAACTCGCAACTCGTTTGTTAAAAATCCACAAA
AAACAGACATCTCGCACTTGATTGGATATTCAAACTCGATATAATTTTAG
TAACACTTTTACTTCTTTTAAAAACGTGTATATTAAAAAAAAAAATGACA
AAAACAGAACCAAAGTTTTACTAAAATTAATTTTCAATTGATATAATTCA
CGAGGTAAATGCTTCTTTTCGCTGGCTAAACAGGTGCCATTCTTCAATTC
AGAGCAAATGTGGTTGTGATGTCTTATGAGACTGATGAGACCGAAAAAAT
GGTGTGATCAGGGTGTAATGGTCGAGAGGTTTTTCTCTTCTACCGTCCCT
TCATTTTCTTTTCTAGTTTTGTCGATCGGGAATTGGTATGATCGGCTGCA
AGATGACGCGAGTTGTTTGACGACTATTAAATCATCTTTTAAGTATGTAT
TAACAGGTGAGTTCGCTGTTTACTGCATTACAATTTTTTATAGCCTTCCA
GGTTTATAAACTTTTTCATTTTGTCAAATGGTTTATTCATTACTCAACAT
TGTTAACCGGTTACTTTTTCGAAGCGGGCTACACAGCTTTTTGCGCAATG
CAATTGGTTCTTTTCGCATGACGACGGGCCTACATTGTCCAGAGTTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAT
AAAGCGCTAAAAATCAATCAAAGTTGAAGGAAACGGTTAACAAATACAAT
AATGACCGGTTTTTTTCGGGCTGTACTGAAAATATTACCCTCGGTCAACG
TAACAACCTCGCAAGCTCGGTCGTTACTTGACCTCGGGCAATATTTCTCA
GTACAGCCCGCACTAACCGGTCATTATTGTATTAGTAAAATTACTAATTA
GCAGATACTCCAAAAACTGGGAAACTTCAAGAGCGAAATTCAGATTCAGA
CAATTATGTTCACATACTGTGATTCCTGATTCCGATCAAAAATTTAAGAA
ACAAAACTGACAAGAATGAGTCAGTAGCCATCCTTGATTCAAAATGTTGA
TGCTAATACTATGTATTTCTTGTAAATTTCAGATCTCGAGGCTGCATTAA
AAGAAGTTGCATTAAATGAACATGAAATTTCACTCGTGGAAAACTCTTCA
AAGTATTTATCAGGTAA

Coding sequence (CDS) from alignment at sc0001903:14908..26674-

>TCONS_00038653 ID=TCONS_00038653|Name=TCONS_00038653|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at sc0001903:14908..26674- (Clytia hemisphaerica)
ATCTCGAGGCTGCATTAAAAGAAGTTGCATTAAATGAACATGAAATTTCA
CTCGTGGAAAACTCTTCAAAGTATTTATCAGGTTTTTGTCGATCGGGAAT
TGGTATGATCGGCTGCAAGATGACGCGAGTTGTTTGACGACTATTAAATC
ATCTTTTAAGTATGTATTAACAGGTACCAAAAACTCAGTGGTTGAATTCA
AAACCCATGGAGACTTCCTTAGAACAGTATAAAGACATGGAGACAGTGTT
GAAGAAAGCTCAACAAGAAATCGTCATGCTTAGATTAAAGGTATCGTCTA
AATCAGATGATCAAAGATTGACAGTCGAGCAAATGCAGTCAGATACAGAA
AGCAGCGATGTCCATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAG
AATATGCTCAACAACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGG
AAAACTAAGATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAGAA
TGAAACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGATCT
CGAGGCTGCATTAAAAGAAGTTGCATTAAATGAACATGAAATTTCACTCG
TGGAAAACTCTTCAAAGTATTTATCAGGTTTTTGTCGATCGGGAATTGGT
ATGATCGGCTGCAAGATGACGCGAGTTGTTTGACGACTATTAAATCATCT
TTTAAGTATGTATTAACAGGTACCAAAAACTCAGTGGTTGAATTCAAAAC
CCATGGAGACTTCCTTAGAACAGTATAAAGACATGGAGACAGTGTTGAAG
AAAGCTCAACAAGAAATCGTCATGCTTAGATTAAAGGTATCGTCTAAATC
AGATGATCAAAGATTGACAGTCGAGCAAATGCAGTCAGATACAGAAAGCA
GCGATGTCCATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAGAATA
TGCTCAACAACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAA
CTAAGATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAGAATGAA
ACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGATCTCGAG
GCTGCATTAAAAGAAGTTGCATTAAATGAACATGAAATTTCACTCGTGGA
AAACTCTTCAAAGTATTTATCAGGTTTTTGTCGATCGGGAATTGGTATGA
TCGGCTGCAAGATGACGCGAGTTGTTTGACGACTATTAAATCATCTTTTA
AGTATGTATTAACAGGTACCAAAAACTCAGTGGTTGAATTCAAAACCCAT
GGAGACTTCCTTAGAACAGTATAAAGACATGGAGACAGTGTTGAAGAAAG
CTCAACAAGAAATCGTCATGCTTAGATTAAAGGTATCGTCTAAATCAGAT
GATCAAAGATTGACAGTCGAGCAAATGCAGTCAGATACAGAAAGCAGCGA
TGTCCATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAGAATATGCT
CAACAACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAA
GATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAGAATGAAACCC
AACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGATCTCGAGGCTG
CATTAAAAGAAGTTGCATTAAATGAACATGAAATTTCACTCGTGGAAAAC
TCTTCAAAGTATTTATCAGGTTTTTGTCGATCGGGAATTGGTATGATCGG
CTGCAAGATGACGCGAGTTGTTTGACGACTATTAAATCATCTTTTAAGTA
TGTATTAACAGGTACCAAAAACTCAGTGGTTGAATTCAAAACCCATGGAG
ACTTCCTTAGAACAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTCA
ACAAGAAATCGTCATGCTTAGATTAAAGGTATCGTCTAAATCAGATGATC
AAAGATTGACAGTCGAGCAAATGCAGTCAGATACAGAAAGCAGCGATGTC
CATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAGAATATGCTCAAC
AACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGATG
GATAGCTCAACTACAAAACCATCCATGGAAGAGGAGAATGAAACCCAACG
CAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGATCTCGAGGCTGCATT
AAAAGAAGTTGCATTAAATGAACATGAAATTTCACTCGTGGAAAACTCTT
CAAAGTATTTATCAGGTTTTTGTCGATCGGGAATTGGTATGATCGGCTGC
AAGATGACGCGAGTTGTTTGACGACTATTAAATCATCTTTTAAGTATGTA
TTAACAGGTACCAAAAACTCAGTGGTTGAATTCAAAACCCATGGAGACTT
CCTTAGAACAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTCAACAA
GAAATCGTCATGCTTAGATTAAAGGTATCGTCTAAATCAGATGATCAAAG
ATTGACAGTCGAGCAAATGCAGTCAGATACAGAAAGCAGCGATGTCCATC
ATAAGAAGCAAACCAGAGGGTGTGACATCAAAAGAATATGCTCAACAACT
CGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGATGGATA
GCTCAACTACAAAACCATCCATGGAAGAGGAGAATGAAACCCAACGCAAA
GCCTTCGCTGAAACTCTCAAAGTTGCATTGATCTCGAGGCTGCATTAAAA
GAAGTTGCATTAAATGAACATGAAATTTCACTCGTGGAAAACTCTTCAAA
GTATTTATCAGGTTTTTGTCGATCGGGAATTGGTATGATCGGCTGCAAGA
TGACGCGAGTTGTTTGACGACTATTAAATCATCTTTTAAGTATGTATTAA
CAGGTACCAAAAACTCAGTGGTTGAATTCAAAACCCATGGAGACTTCCTT
AGAACAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTCAACAAGAAA
TCGTCATGCTTAGATTAAAGGTATCGTCTAAATCAGATGATCAAAGATTG
ACAGTCGAGCAAATGCAGTCAGATACAGAAAGCAGCGATGTCCATCATAA
GAAGCAAACCAGAGGGTGTGACATCAAAAGAATATGCTCAACAACTCGCC
ATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGATGGATAGCTC
AACTACAAAACCATCCATGGAAGAGGAGAATGAAACCCAACGCAAAGCCT
TCGCTGAAACTCTCAAAGTTGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023213XLOC_023213Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038653-proteinTCONS_00038653-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038653-exon-sc0001903-1575043694:26527..26674TCONS_00038653-exon-sc0001903-1575043694:26527..26674Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1575043694:22661..22765TCONS_00038653-exon-sc0001903-1575043694:22661..22765Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1575043694:21632..21758TCONS_00038653-exon-sc0001903-1575043694:21632..21758Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1575043694:21043..21096TCONS_00038653-exon-sc0001903-1575043694:21043..21096Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1575043694:16569..16658TCONS_00038653-exon-sc0001903-1575043694:16569..16658Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1575043694:14908..14992TCONS_00038653-exon-sc0001903-1575043694:14908..14992Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1510915933:26527..26674TCONS_00038653-exon-sc0001903-1510915933:26527..26674Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1510915933:22661..22765TCONS_00038653-exon-sc0001903-1510915933:22661..22765Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1510915933:21632..21758TCONS_00038653-exon-sc0001903-1510915933:21632..21758Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1510915933:21043..21096TCONS_00038653-exon-sc0001903-1510915933:21043..21096Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1510915933:16569..16658TCONS_00038653-exon-sc0001903-1510915933:16569..16658Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1510915933:14908..14992TCONS_00038653-exon-sc0001903-1510915933:14908..14992Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1491911889:26527..26674TCONS_00038653-exon-sc0001903-1491911889:26527..26674Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1491911889:22661..22765TCONS_00038653-exon-sc0001903-1491911889:22661..22765Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1491911889:21632..21758TCONS_00038653-exon-sc0001903-1491911889:21632..21758Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1491911889:21043..21096TCONS_00038653-exon-sc0001903-1491911889:21043..21096Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1491911889:16569..16658TCONS_00038653-exon-sc0001903-1491911889:16569..16658Clytia hemisphaericaexon
TCONS_00038653-exon-sc0001903-1491911889:14908..14992TCONS_00038653-exon-sc0001903-1491911889:14908..14992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001903supercontigsc0001903:14908..26674 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.97159	4.90592	7.53812	5.80338	6.67022	6.84327	9.96905	10.3591	7.83932	9.52531	8.28491	4.81296	2.59506	1.6948	2.21376	1.94825	1.5847	2.69818	0.875879	2.02514	1.51345	0	3.97831	2.28659	33.2627	52.4661	1.12071	3.66914	2.81651	1.72137
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025888MEI4
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0042138meiotic DNA double-strand break formation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0042138 meiotic DNA double-strand break formation
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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