TCONS_00038614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038614
Unique NameTCONS_00038614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038614 ID=TCONS_00038614|Name=TCONS_00038614|organism=Clytia hemisphaerica|type=transcript|length=449bp
NNACAATGAAGCAAAGATTGACTCAGGATGACTCgacatttttgcatttt
gaccTTCACGTTAAGGCATAAGGGAAAAGTATGCTAAAAGAGGAAATTAA
ACCTGCAGAAACTATATTACGTACATTATTTAGCTTGAACAAAACAGAAT
AGAATGGAGTAATATATAAATATATGCAATGGATGTtgatattttgtaaa
tgttttctgGACAACCGTGGTATGAACAGTTAAACCTGGTTGAGCACCGC
CTAACATATCATTTGAAATTGGATATATACTTGGAAAATGTTCTCTGGAA
AAAGTGGATTACCATACACGTATTATGTAAATTTGATCAGTCTATTTTTC
GAATCTGCATTTATTTGGATGTTTGTTTTGTATCCATGTTGTCCCTGGAA
ATATGGTCCAAACAAGTCATCAGAGCCAGGAAACACGTGGGCCAAATTN
Run BLAST on NCBI

transcript from alignment at sc0001893:7135..7583

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038614 ID=TCONS_00038614|Name=TCONS_00038614|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0001893:7135..7583 (Clytia hemisphaerica)
NAATTTGGCCCACGTGTTTCCTGGCTCTGATGACTTGTTTGGACCATATT
TCCAGGGACAACATGGATACAAAACAAACATCCAAATAAATGCAGATTCG
AAAAATAGACTGATCAAATTTACATAATACGTGTATGGTAATCCACTTTT
TCCAGAGAACATTTTCCAAGTATATATCCAATTTCAAATGATATGTTAGG
CGGTGCTCAACCAGGTTTAACTGTTCATACCACGGTTGTCcagaaaacat
ttacaaaatatcaACATCCATTGCATATATTTATATATTACTCCATTCTA
TTCTGTTTTGTTCAAGCTAAATAATGTACGTAATATAGTTTCTGCAGGTT
TAATTTCCTCTTTTAGCATACTTTTCCCTTATGCCTTAACGTGAAggtca
aaatgcaaaaatgtcGAGTCATCCTGAGTCAATCTTTGCTTCATTGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023181XLOC_023181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038614-exon-sc0001893-1491911889:7135..7583TCONS_00038614-exon-sc0001893-1491911889:7135..7583Clytia hemisphaericaexon
TCONS_00038614-exon-sc0001893-1510915933:7135..7583TCONS_00038614-exon-sc0001893-1510915933:7135..7583Clytia hemisphaericaexon
TCONS_00038614-exon-sc0001893-1575043694:7135..7583TCONS_00038614-exon-sc0001893-1575043694:7135..7583Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001893supercontigsc0001893:7135..7583 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.589338	0.177305	0.883542	0.565423	2.29406	0.717442	1.11132	1.88276	0.489364	0.750973	0.201459	0.54842	1.82222	1.28054	0.577677	0.766215	1.14246	0.352801	9.48638	10.1976	0.372487	1.42487	0.63069	2.27085	0	0.333443	1.97622	2.81479	3.31377	1.9447
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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