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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038596 ID=TCONS_00038596|Name=TCONS_00038596|organism=Clytia hemisphaerica|type=transcript|length=1033bp
ATATGAGCCTGATAGTTTACGCGTAATGCAAAGCTCGCTTCATCGTTACC
TTGTGGAAAAGGGGTCTACAATGAACATTTTAAAGGACCAATCCTTCTCT
AAAAGTCGAAAGATACTTGAGGGTAAAGCAAGAATTCTGAGAGGAGCGGG
AAAAGGCAAGAAGAGGAATGCCAGCAGTGCGTTGGATCCTGATGAAGAAG
AACTCTTATGGTCAGTGGGAAAACTTGGTGATAATTCTGCAATTTCGCTG
GTGAGAACGATGTGGTTCGTTTGTTCTGAACATTTTGGTCTACGAGGCTG
TCAGGAACATTGTACTATGCGGGttgaagattttatttttaagaaagacA
AAAATGGTtgtgattttgttgaatttataGAGGATCCAACAAAAACAAGA
CAAAGTGGATTAAAACCAATTCAGCgaaaaacaaatccaaaaatGTACGC
TATTGGTGGAGAAAGATGCCCTGTCCGTTTATTAAGATTATATTTATCAA
AACGCCCTGAATCGATTCAAGAAAGTGGTAGGTTTTATTTAACaccaaag
aaatcttttaatcCTAATGATGATGTTTGGTTTATGCAAGTACCAATGGG
AAAAAACACAATCTCAGGAATCATGAAAGCACTGACCTCAGGAACAGAAC
TTGAAAACTCGAAGAAAAAGTTTACTAACCACAGTATCCGAAAAACGACG
GTGAAAAAATTGAAGGCAGCAAACATACCAGAGTCGTCTATAATCAAAGT
TACAGGCCATACTACAACGAAAGGATTAAGCAGCTATGATCCTGGAGATG
AGAATGAATTTCGTTCGATGTCGAATGCTTTAAATGCTCCATCCACTGGA
CAAGACATTCGAAACAATAATCCAGTTTACCAATCTGCATTCCAGTCTTC
ATTTGTACAAAATGTGCAAACACCACAAAATGTTTTCCATGGATGTACAG
TTAATTTCAACACGGTTCATCAGAATGTCGTCAAACGTAAATGTAAACGT
GTTGTAATCGAAAGTGACTCTTCACAATCTCAG Run BLAST on NCBI protein sequence of TCONS_00038596-protein >TCONS_00038596-protein ID=TCONS_00038596-protein|Name=TCONS_00038596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
YEPDSLRVMQSSLHRYLVEKGSTMNILKDQSFSKSRKILEGKARILRGAG
KGKKRNASSALDPDEEELLWSVGKLGDNSAISLVRTMWFVCSEHFGLRGC
QEHCTMRVEDFIFKKDKNGCDFVEFIEDPTKTRQSGLKPIQRKTNPKMYA
IGGERCPVRLLRLYLSKRPESIQESGRFYLTPKKSFNPNDDVWFMQVPMG
KNTISGIMKALTSGTELENSKKKFTNHSIRKTTVKKLKAANIPESSIIKV
TGHTTTKGLSSYDPGDENEFRSMSNALNAPSTGQDIRNNNPVYQSAFQSS
FVQNVQTPQNVFHGCTVNFNTVHQNVVKRKCKRVVIESDSSQSQ Run BLAST on NCBI transcript from alignment at sc0001890:17958..18990 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038596 ID=TCONS_00038596|Name=TCONS_00038596|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at sc0001890:17958..18990 (Clytia hemisphaerica)
CTGAGATTGTGAAGAGTCACTTTCGATTACAACACGTTTACATTTACGTT
TGACGACATTCTGATGAACCGTGTTGAAATTAACTGTACATCCATGGAAA
ACATTTTGTGGTGTTTGCACATTTTGTACAAATGAAGACTGGAATGCAGA
TTGGTAAACTGGATTATTGTTTCGAATGTCTTGTCCAGTGGATGGAGCAT
TTAAAGCATTCGACATCGAACGAAATTCATTCTCATCTCCAGGATCATAG
CTGCTTAATCCTTTCGTTGTAGTATGGCCTGTAACTTTGATTATAGACGA
CTCTGGTATGTTTGCTGCCTTCAATTTTTTCACCGTCGTTTTTCGGATAC
TGTGGTTAGTAAACTTTTTCTTCGAGTTTTCAAGTTCTGTTCCTGAGGTC
AGTGCTTTCATGATTCCTGAGATTGTGTTTTTTCCCATTGGTACTTGCAT
AAACCAAACATCATCATTAGgattaaaagatttctttggtGTTAAATAAA
ACCTACCACTTTCTTGAATCGATTCAGGGCGTTTTGATAAATATAATCTT
AATAAACGGACAGGGCATCTTTCTCCACCAATAGCGTACatttttggatt
tgtttttcGCTGAATTGGTTTTAATCCACTTTGTCTTGTTTTTGTTGGAT
CCTCtataaattcaacaaaatcacaACCATTTTTgtctttcttaaaaata
aaatcttcaaCCCGCATAGTACAATGTTCCTGACAGCCTCGTAGACCAAA
ATGTTCAGAACAAACGAACCACATCGTTCTCACCAGCGAAATTGCAGAAT
TATCACCAAGTTTTCCCACTGACCATAAGAGTTCTTCTTCATCAGGATCC
AACGCACTGCTGGCATTCCTCTTCTTGCCTTTTCCCGCTCCTCTCAGAAT
TCTTGCTTTACCCTCAAGTATCTTTCGACTTTTAGAGAAGGATTGGTCCT
TTAAAATGTTCATTGTAGACCCCTTTTCCACAAGGTAACGATGAAGCGAG
CTTTGCATTACGCGTAAACTATCAGGCTCATAT Coding sequence (CDS) from alignment at sc0001890:17958..18990 >TCONS_00038596 ID=TCONS_00038596|Name=TCONS_00038596|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0001890:17958..18990 (Clytia hemisphaerica)
CTGAGATTGTGAAGAGTCACTTTCGATTACAACACGTTTACATTTACGTT
TGACGACATTCTGATGAACCGTGTTGAAATTAACTGTACATCCATGGAAA
ACATTTTGTGGTGTTTGCACATTTTGTACAAATGAAGACTGGAATGCAGA
TTGGTAAACTGGATTATTGTTTCGAATGTCTTGTCCAGTGGATGGAGCAT
TTAAAGCATTCGACATCGAACGAAATTCATTCTCATCTCCAGGATCATAG
CTGCTTAATCCTTTCGTTGTAGTATGGCCTGTAACTTTGATTATAGACGA
CTCTGGTATGTTTGCTGCCTTCAATTTTTTCACCGTCGTTTTTCGGATAC
TGTGGTTAGTAAACTTTTTCTTCGAGTTTTCAAGTTCTGTTCCTGAGGTC
AGTGCTTTCATGATTCCTGAGATTGTGTTTTTTCCCATTGGTACTTGCAT
AAACCAAACATCATCATTAGgattaaaagatttctttggtGTTAAATAAA
ACCTACCACTTTCTTGAATCGATTCAGGGCGTTTTGATAAATATAATCTT
AATAAACGGACAGGGCATCTTTCTCCACCAATAGCGTACatttttggatt
tgtttttcGCTGAATTGGTTTTAATCCACTTTGTCTTGTTTTTGTTGGAT
CCTCtataaattcaacaaaatcacaACCATTTTTgtctttcttaaaaata
aaatcttcaaCCCGCATAGTACAATGTTCCTGACAGCCTCGTAGACCAAA
ATGTTCAGAACAAACGAACCACATCGTTCTCACCAGCGAAATTGCAGAAT
TATCACCAAGTTTTCCCACTGACCATAAGAGTTCTTCTTCATCAGGATCC
AACGCACTGCTGGCATTCCTCTTCTTGCCTTTTCCCGCTCCTCTCAGAAT
TCTTGCTTTACCCTCAAGTATCTTTCGACTTTTAGAGAAGGATTGGTCCT
TTAAAATGTTCATTGTAGACCCCTTTTCCACAAGGTAACGATGAAGCGAG
CTTTGCATTACGCGTAAACTATCAGGCTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038596-exon-sc0001890-1491911889:17958..18990 | TCONS_00038596-exon-sc0001890-1491911889:17958..18990 | Clytia hemisphaerica | exon |
| TCONS_00038596-exon-sc0001890-1510915933:17958..18990 | TCONS_00038596-exon-sc0001890-1510915933:17958..18990 | Clytia hemisphaerica | exon |
| TCONS_00038596-exon-sc0001890-1575043694:17958..18990 | TCONS_00038596-exon-sc0001890-1575043694:17958..18990 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001890 | supercontig | sc0001890:17958..18990 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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