TCONS_00038501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038501
Unique NameTCONS_00038501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038501 ID=TCONS_00038501|Name=TCONS_00038501|organism=Clytia hemisphaerica|type=transcript|length=1935bp
GTTTTGTTATGTTTGGCGCACCGTTTAGAATAGAAAGcaaattttctttg
tattaAATACCAAATATGGTTATGAGATGACGTATAGATAGAGGATCTCG
TGGGTTAAATGTTCAAGGAGAATTTTCTTCAGCCCTTTTTACTTACACTA
AACTTCTGAGTCCACGTCCTTTACCGAGGTACTACTTCAAGTCAATATGC
CTATTGAAAAGAAACCCAATAAAACCAAACTTCACATCAACATCGTCGTC
ATTGGTCATGTCGATTCTGGAAAATCCACATCCACTGGTCACTTGATCTA
CAAATGTGGTGGCATCGACAAGAGAGCCATCGAAAAATTCGAGAAAGAAG
CCCAAGAAATGGGAAAAGGTTCCTTCAAATATGCCTGGGTTTTGGACAAA
TTGAAGGCTGAGCGTGAACGTGGTATCACCATTGATATTGCCTTGTGGAA
ATTCTTCACTAACAACTATGAGGTCACCATCATTGATGCCCCTGGACATC
GTGATTTCATCAAGAACATGATTACAGGAACATCACAAGCTGACTGTGCT
GTCCTCATCGTTGCCTCGTCAACTGGTGAATTCGAAGCTGGAATCTCAAA
AAATGGACAAACCCGTGAACATGCCCTTCTTGCATACACACTTGGTGTCA
AACAATTGATTGTTGGTGTCAACAAGATCGACAACACTGAACCACCATAC
AGTTGTGACCGTTTCAATGAAATCGCCAAAGAAATTAGTGCCTACGTTAA
GAAAGTCGGATACAATCCTAAATCAGTTGCTGTTGTCCCAATCTCTGGAT
GGCATGGAGACAACATGATTGAAGAATCAAAGAACATGTCCTGGTACAAA
GGATGGGCAACTGAAGGTAAAGATGAAGACAAAAAAGACTGGAAAGCCTC
TGGCAAAACTATGTTGCAAGCTTTAGATTCCATTCGTCCACCAAAACGTC
CATCATCCAAACCACTCCGTCTTCCACTTCAAGATGTATACAAGATTGGA
GGTATTGGAACAGTTCCAGTCGGTCGTGTTGAAACTGGTATCATCAAGCC
AGGAATGGTTGTCACCTTTGCCCCAGTAGGACTCAGTACTGAAGTCAAAT
CTGTTGAAATGCATCACGAATCGTTAACTGAAGCCCTCCCTGGAGACAAT
GTTGGTTTCAACGTCAAGAATGTCTCAGTTAAAGAAATCAAGAGAGGTAT
GGTTGCCTCAGACAGCAAGAATGACCCAGCCAAAGGAGTTGAAAACTTCC
TTGCTCAAGTCATCATCCTAAACCACCCTGGAGAAATCCATGCTGGATAC
CAACCAGTTTTGGATTGTCACACTGCCCACGTTGCCTGTAAATTTGCTGT
CCTCCAACAAAAGATTGATCGTCGATCTGGTAAAGTTTTGGAAGAAAACC
CAAAGATGGTTAAATCTGGAGATGCTGCTATGATTGAGCTTATTCCATCC
AAACCTATGGTTGTTGAATCTTTCAATGACTATGCTCCTCTTGGACGTTT
TGCTGTTCGTGACATGAGACAAACTGTTGCTGTTGGTGTCATTAAGGGTG
TTACTAAGAAAGAGAAATCTGATGGCAAGACAACCAAATCTGCTGCCAAA
GCTGGTGGCAAGAAGAAGTGAACGCAATTTGATTTGATACACTGGAGTAA
AATTGTGCTCAAAATGAAACTTTATCGGACTCAAAATTTTCATAGAAAGC
ATTTGCGACTGAAAAGTGTAAATTATTGaataataaaaattgaattggaa
ccaattattttttttaattgtgtgATCTGACTTAGTGATTCATAATCTTG
TTTACCACCCTTTATCTAGATTTTGATTtggtcattttgagaaaatttgg
cATCCCTTTGTTTCAAAGAGGACTTAGAATGTCTGTCAATTTGTTCTAGG
CTTCCTATCTCAAGTTTCCTCCTTTCTTTTTTTTT
Run BLAST on NCBI

protein sequence of elongation factor 1-alpha

>TCONS_00038501-protein ID=TCONS_00038501-protein|Name=elongation factor 1-alpha|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MPIEKKPNKTKLHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEK
EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFTNNYEVTIIDAPG
HRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLG
VKQLIVGVNKIDNTEPPYSCDRFNEIAKEISAYVKKVGYNPKSVAVVPIS
GWHGDNMIEESKNMSWYKGWATEGKDEDKKDWKASGKTMLQALDSIRPPK
RPSSKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPVGLSTEV
KSVEMHHESLTEALPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVEN
FLAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEE
NPKMVKSGDAAMIELIPSKPMVVESFNDYAPLGRFAVRDMRQTVAVGVIK
GVTKKEKSDGKTTKSAAKAGGKKK
Run BLAST on NCBI

transcript from alignment at sc0001868:1..2480-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038501 ID=TCONS_00038501|Name=TCONS_00038501|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at sc0001868:1..2480- (Clytia hemisphaerica)
GTTTTGTTATGTTTGGCGCACCGTTTAGAATAGAAAGCAAATTTTCTTTG
TATTAAATACCAAATATGGTTATGAGATGACGTATAGATAGAGGATCTCG
TGGGTTAAATGTTCAAGGAGAATTTTCTTCAGCCCTTTTTACTTACACTA
AACTTCTGAGTCCACGTCCTTTACCGAGGTTAGTAACTTATGGTGATTTA
TCTCTGAAAATCTATTTGATCTTTCATATAAAATTTGATGATATAGTTGG
AATCCTTTGTGTAGTCTGTAAAGTACGTGCCTTGTTCATAATTTTGTTGA
AAATGTGGAACCTTCGTCTCGAAATTTATTTACCAAGATCTTTGCATTTT
TTTGTAGGTACTACTTCAAGTCAATATGCCTATTGAAAAGAAACCCAATA
AAACCAAACTTCACATCAACATCGTCGTCATTGGTCATGTCGATTCTGGA
AAATCCACATCCACTGGTCACTTGATCTACAAATGTGGTGGCATCGACAA
GAGAGCCATCGAAAAATTCGAGAAAGAAGCCCAAGAAATGGGAAAAGGTT
CCTTCAAATATGCCTGGGTTTTGGACAAATTGAAGGCTGAGCGTGAACGT
GGTATCACCATTGATATTGCCTTGTGGAAATTCTTCACTAACAACTATGA
GGTCACCATCATTGATGCCCCTGGACATCGTGATTTCATCAAGAACATGA
TTACAGGAACATCACAAGCTGACTGTGCTGTCCTCATCGTTGCCTCGTCA
ACTGGTGAATTCGAAGCTGGAATCTCAAAAAATGGACAAACCCGTGAACA
TGCCCTTCTTGCATACACACTTGGTAAACATTTTGTCTGTCTCTTTTATT
TATTAAAGGAATTGACTTGGCTTTTGTACAAAGAATTATGGAATGTTCAT
TACTTGTTAAGAAATGATCTCATCTTGGTGAACTTTAATGTGTTATAATT
GAAAGCCTATTTCCAGACATACAAATCATCTAGCAAATCATAACCATGTT
TCCCTTTTCAAAATTCAGGTGTCAAACAATTGATTGTTGGTGTCAACAAG
ATCGACAACACTGAACCACCATACAGTTGTGACCGTTTCAATGAAATCGC
CAAAGAAATTAGTGCCTACGTTAAGAAAGTCGGATACAATCCTAAATCAG
TTGCTGTTGTCCCAATCTCTGGATGGCATGGAGACAACATGATTGAAGAA
TCAAAGAACATGTCCTGGTACAAAGGATGGGCAACTGAAGGTAAAGATGA
AGACAAAAAAGACTGGAAAGCCTCTGGCAAAACTATGTTGCAAGCTTTAG
ATTCCATTCGTCCACCAAAACGTCCATCATCCAAACCACTCCGTCTTCCA
CTTCAAGATGTATACAAGATTGGAGGTATTGGAACAGTTCCAGTCGGTCG
TGTTGAAACTGGTATCATCAAGCCAGGAATGGTTGTCACCTTTGCCCCAG
TAGGACTCAGTACTGAAGTCAAATCTGTTGAAATGCATCACGAATCGTTA
ACTGAAGCCCTCCCTGGAGACAATGTTGGTTTCAACGTCAAGAATGTCTC
AGTTAAAGAAATCAAGAGAGGTATGGTTGCCTCAGACAGCAAGAATGACC
CAGCCAAAGGAGTTGAAAACTTCCTTGCTCAAGTAAGTGTATTTCTCTTG
AAAATATAGTGCGCCCTGTCATAGAAACTTCTGTGAAAGTTTATTTACAA
AAGTTTTAGCTTTAATATTTGGTATGGTCTTTTTTAGACCAATGCTGACC
CTGCTAAATCACCCTAAAAATAAGCTCTCACATTATTTAACCTTTTAATC
CAGGTCATCATCCTAAACCACCCTGGAGAAATCCATGCTGGATACCAACC
AGTTTTGGATTGTCACACTGCCCACGTTGCCTGTAAATTTGCTGTCCTCC
AACAAAAGATTGATCGTCGATCTGGTAAAGTTTTGGAAGAAAACCCAAAG
ATGGTTAAATCTGGAGATGCTGCTATGATTGAGCTTATTCCATCCAAACC
TATGGTTGTTGAATCTTTCAATGACTATGCTCCTCTTGGACGTTTTGCTG
TTCGTGACATGAGACAAACTGTTGCTGTTGGTGTCATTAAGGGTGTTACT
AAGAAAGAGAAATCTGATGGCAAGACAACCAAATCTGCTGCCAAAGCTGG
TGGCAAGAAGAAGTGAACGCAATTTGATTTGATACACTGGAGTAAAATTG
TGCTCAAAATGAAACTTTATCGGACTCAAAATTTTCATAGAAAGCATTTG
CGACTGAAAAGTGTAAATTATTGAATAATAAAAATTGAATTGGAACCAAT
TATTTTTTTTAATTGTGTGATCTGACTTAGTGATTCATAATCTTGTTTAC
CACCCTTTATCTAGATTTTGATTTGGTCATTTTGAGAAAATTTGGCATCC
CTTTGTTTCAAAGAGGACTTAGAATGTCTGTCAATTTGTTCTAGGCTTCC
TATCTCAAGTTTCCTCCTTTCTTTTTTTTT

Coding sequence (CDS) from alignment at sc0001868:1..2480-

>TCONS_00038501 ID=TCONS_00038501|Name=TCONS_00038501|organism=Clytia hemisphaerica|type=CDS|length=4275bp|location=Sequence derived from alignment at sc0001868:1..2480- (Clytia hemisphaerica)
GTCATCATCCTAAACCACCCTGGAGAAATCCATGCTGGATACCAACCAGT
TTTGGATTGTCACACTGCCCACGTTGCCTGTAAATTTGCTGTCCTCCAAC
AAAAGATTGATCGTCGATCTGGTAAAGTTTTGGAAGAAAACCCAAAGATG
GTTAAATCTGGAGATGCTGCTATGATTGAGCTTATTCCATCCAAACCTAT
GGTTGTTGAATCTTTCAATGACTATGCTCCTCTTGGACGTTTTGCTGTTC
GTGACATGAGACAAACTGTTGCTGTTGGTGTCATTAAGGGTGTTACTAAG
AAAGAGAAATCTGATGGCAAGACAACCAAATCTGCTGCCAAAGCTGGTGG
CAAGAAGAAGTGAGTGTCAAACAATTGATTGTTGGTGTCAACAAGATCGA
CAACACTGAACCACCATACAGTTGTGACCGTTTCAATGAAATCGCCAAAG
AAATTAGTGCCTACGTTAAGAAAGTCGGATACAATCCTAAATCAGTTGCT
GTTGTCCCAATCTCTGGATGGCATGGAGACAACATGATTGAAGAATCAAA
GAACATGTCCTGGTACAAAGGATGGGCAACTGAAGGTAAAGATGAAGACA
AAAAAGACTGGAAAGCCTCTGGCAAAACTATGTTGCAAGCTTTAGATTCC
ATTCGTCCACCAAAACGTCCATCATCCAAACCACTCCGTCTTCCACTTCA
AGATGTATACAAGATTGGAGGTATTGGAACAGTTCCAGTCGGTCGTGTTG
AAACTGGTATCATCAAGCCAGGAATGGTTGTCACCTTTGCCCCAGTAGGA
CTCAGTACTGAAGTCAAATCTGTTGAAATGCATCACGAATCGTTAACTGA
AGCCCTCCCTGGAGACAATGTTGGTTTCAACGTCAAGAATGTCTCAGTTA
AAGAAATCAAGAGAGGTATGGTTGCCTCAGACAGCAAGAATGACCCAGCC
AAAGGAGTTGAAAACTTCCTTGCTCAAATGCCTATTGAAAAGAAACCCAA
TAAAACCAAACTTCACATCAACATCGTCGTCATTGGTCATGTCGATTCTG
GAAAATCCACATCCACTGGTCACTTGATCTACAAATGTGGTGGCATCGAC
AAGAGAGCCATCGAAAAATTCGAGAAAGAAGCCCAAGAAATGGGAAAAGG
TTCCTTCAAATATGCCTGGGTTTTGGACAAATTGAAGGCTGAGCGTGAAC
GTGGTATCACCATTGATATTGCCTTGTGGAAATTCTTCACTAACAACTAT
GAGGTCACCATCATTGATGCCCCTGGACATCGTGATTTCATCAAGAACAT
GATTACAGGAACATCACAAGCTGACTGTGCTGTCCTCATCGTTGCCTCGT
CAACTGGTGAATTCGAAGCTGGAATCTCAAAAAATGGACAAACCCGTGAA
CATGCCCTTCTTGCATACACACTTGGTCATCATCCTAAACCACCCTGGAG
AAATCCATGCTGGATACCAACCAGTTTTGGATTGTCACACTGCCCACGTT
GCCTGTAAATTTGCTGTCCTCCAACAAAAGATTGATCGTCGATCTGGTAA
AGTTTTGGAAGAAAACCCAAAGATGGTTAAATCTGGAGATGCTGCTATGA
TTGAGCTTATTCCATCCAAACCTATGGTTGTTGAATCTTTCAATGACTAT
GCTCCTCTTGGACGTTTTGCTGTTCGTGACATGAGACAAACTGTTGCTGT
TGGTGTCATTAAGGGTGTTACTAAGAAAGAGAAATCTGATGGCAAGACAA
CCAAATCTGCTGCCAAAGCTGGTGGCAAGAAGAAGTGAGTGTCAAACAAT
TGATTGTTGGTGTCAACAAGATCGACAACACTGAACCACCATACAGTTGT
GACCGTTTCAATGAAATCGCCAAAGAAATTAGTGCCTACGTTAAGAAAGT
CGGATACAATCCTAAATCAGTTGCTGTTGTCCCAATCTCTGGATGGCATG
GAGACAACATGATTGAAGAATCAAAGAACATGTCCTGGTACAAAGGATGG
GCAACTGAAGGTAAAGATGAAGACAAAAAAGACTGGAAAGCCTCTGGCAA
AACTATGTTGCAAGCTTTAGATTCCATTCGTCCACCAAAACGTCCATCAT
CCAAACCACTCCGTCTTCCACTTCAAGATGTATACAAGATTGGAGGTATT
GGAACAGTTCCAGTCGGTCGTGTTGAAACTGGTATCATCAAGCCAGGAAT
GGTTGTCACCTTTGCCCCAGTAGGACTCAGTACTGAAGTCAAATCTGTTG
AAATGCATCACGAATCGTTAACTGAAGCCCTCCCTGGAGACAATGTTGGT
TTCAACGTCAAGAATGTCTCAGTTAAAGAAATCAAGAGAGGTATGGTTGC
CTCAGACAGCAAGAATGACCCAGCCAAAGGAGTTGAAAACTTCCTTGCTC
AAATGCCTATTGAAAAGAAACCCAATAAAACCAAACTTCACATCAACATC
GTCGTCATTGGTCATGTCGATTCTGGAAAATCCACATCCACTGGTCACTT
GATCTACAAATGTGGTGGCATCGACAAGAGAGCCATCGAAAAATTCGAGA
AAGAAGCCCAAGAAATGGGAAAAGGTTCCTTCAAATATGCCTGGGTTTTG
GACAAATTGAAGGCTGAGCGTGAACGTGGTATCACCATTGATATTGCCTT
GTGGAAATTCTTCACTAACAACTATGAGGTCACCATCATTGATGCCCCTG
GACATCGTGATTTCATCAAGAACATGATTACAGGAACATCACAAGCTGAC
TGTGCTGTCCTCATCGTTGCCTCGTCAACTGGTGAATTCGAAGCTGGAAT
CTCAAAAAATGGACAAACCCGTGAACATGCCCTTCTTGCATACACACTTG
GTCATCATCCTAAACCACCCTGGAGAAATCCATGCTGGATACCAACCAGT
TTTGGATTGTCACACTGCCCACGTTGCCTGTAAATTTGCTGTCCTCCAAC
AAAAGATTGATCGTCGATCTGGTAAAGTTTTGGAAGAAAACCCAAAGATG
GTTAAATCTGGAGATGCTGCTATGATTGAGCTTATTCCATCCAAACCTAT
GGTTGTTGAATCTTTCAATGACTATGCTCCTCTTGGACGTTTTGCTGTTC
GTGACATGAGACAAACTGTTGCTGTTGGTGTCATTAAGGGTGTTACTAAG
AAAGAGAAATCTGATGGCAAGACAACCAAATCTGCTGCCAAAGCTGGTGG
CAAGAAGAAGTGAGTGTCAAACAATTGATTGTTGGTGTCAACAAGATCGA
CAACACTGAACCACCATACAGTTGTGACCGTTTCAATGAAATCGCCAAAG
AAATTAGTGCCTACGTTAAGAAAGTCGGATACAATCCTAAATCAGTTGCT
GTTGTCCCAATCTCTGGATGGCATGGAGACAACATGATTGAAGAATCAAA
GAACATGTCCTGGTACAAAGGATGGGCAACTGAAGGTAAAGATGAAGACA
AAAAAGACTGGAAAGCCTCTGGCAAAACTATGTTGCAAGCTTTAGATTCC
ATTCGTCCACCAAAACGTCCATCATCCAAACCACTCCGTCTTCCACTTCA
AGATGTATACAAGATTGGAGGTATTGGAACAGTTCCAGTCGGTCGTGTTG
AAACTGGTATCATCAAGCCAGGAATGGTTGTCACCTTTGCCCCAGTAGGA
CTCAGTACTGAAGTCAAATCTGTTGAAATGCATCACGAATCGTTAACTGA
AGCCCTCCCTGGAGACAATGTTGGTTTCAACGTCAAGAATGTCTCAGTTA
AAGAAATCAAGAGAGGTATGGTTGCCTCAGACAGCAAGAATGACCCAGCC
AAAGGAGTTGAAAACTTCCTTGCTCAAATGCCTATTGAAAAGAAACCCAA
TAAAACCAAACTTCACATCAACATCGTCGTCATTGGTCATGTCGATTCTG
GAAAATCCACATCCACTGGTCACTTGATCTACAAATGTGGTGGCATCGAC
AAGAGAGCCATCGAAAAATTCGAGAAAGAAGCCCAAGAAATGGGAAAAGG
TTCCTTCAAATATGCCTGGGTTTTGGACAAATTGAAGGCTGAGCGTGAAC
GTGGTATCACCATTGATATTGCCTTGTGGAAATTCTTCACTAACAACTAT
GAGGTCACCATCATTGATGCCCCTGGACATCGTGATTTCATCAAGAACAT
GATTACAGGAACATCACAAGCTGACTGTGCTGTCCTCATCGTTGCCTCGT
CAACTGGTGAATTCGAAGCTGGAATCTCAAAAAATGGACAAACCCGTGAA
CATGCCCTTCTTGCATACACACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023087XLOC_023087Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
elongation factor 1-alphaTCONS_00038501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038501-exon-sc0001868-1575043694:2303..2480TCONS_00038501-exon-sc0001868-1575043694:2303..2480Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1575043694:1658..2123TCONS_00038501-exon-sc0001868-1575043694:1658..2123Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1575043694:849..1462TCONS_00038501-exon-sc0001868-1575043694:849..1462Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1575043694:1..677TCONS_00038501-exon-sc0001868-1575043694:1..677Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1510915933:2303..2480TCONS_00038501-exon-sc0001868-1510915933:2303..2480Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1510915933:1658..2123TCONS_00038501-exon-sc0001868-1510915933:1658..2123Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1510915933:849..1462TCONS_00038501-exon-sc0001868-1510915933:849..1462Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1510915933:1..677TCONS_00038501-exon-sc0001868-1510915933:1..677Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1491911889:2303..2480TCONS_00038501-exon-sc0001868-1491911889:2303..2480Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1491911889:1658..2123TCONS_00038501-exon-sc0001868-1491911889:1658..2123Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1491911889:849..1462TCONS_00038501-exon-sc0001868-1491911889:849..1462Clytia hemisphaericaexon
TCONS_00038501-exon-sc0001868-1491911889:1..677TCONS_00038501-exon-sc0001868-1491911889:1..677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001868supercontigsc0001868:1..2480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4101.21	4070.99	3937.66	3745.34	10530.4	8267.28	10489.9	11122.5	11470.3	11502.8	11993.7	13870.4	15947.2	16083.7	13555.8	14547.2	12956.8	15004.4	8294.09	9834.18	15291.5	15525.2	8289.37	9188.43	11702.3	11968.7	12520.2	13767.7	6950.82	7302.37
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR004161EFTu-like_2
IPR004160Transl_elong_EFTu/EF1A_C
IPR004539Transl_elong_EF1A_euk/arc
IPR031157G_TR_CS
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR009000Transl_B-barrel
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
Blast
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BLAST of TCONS_00038501 vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 353/447 (78.97%), Postives = 392/447 (87.70%), Query Frame = 2 
Query:  221 KTKLHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFTNNYEVTIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKIDNTEPPYSCDRFNEIAKEISAYVKKVGYNPKSVAVVPISGWHGDNMIEESKNMSWYKGWATEGKDEDKKDWKASGKTMLQALDSIXXXXXXXXXXXXXXXQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPVGLSTEVKSVEMHHESLTEALPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFLAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPKMVKSGDAAMIELIPSKPMVVESFNDYAPLGRFAVRDMRQTVAVGVIKGVTKK 1561
            K K HINIVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF T+ Y VTIIDAPGHRDFIKNMITGTSQADCAVLIVA+  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNK+D+TEPPYS  R+ EI KE+S Y+KK+GYNP +VA VPISGW+GDNM+E S NM W+KGW        +KD  ASG T+L+ALD I PP RP+ KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFAPV ++TEVKSVEMHHE+L+EALPGDNVGFNVKNVSVK+++RG VA DSKNDP      F AQVIILNHPG+I AGY PVLDCHTAH+ACKFA L++KIDRRSGK LE+ PK +KSGDAA+++++P KPM VESF+DY PLGRFAVRDMRQTVAVGVIK V KK
Sbjct:    3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVT-----RKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
The following BLAST results are available for this feature:
BLAST of TCONS_00038501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1A10.000e+078.97Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
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