elongation factor 1-alpha (polypeptide) - C. hemisphaerica

Overview
Nameelongation factor 1-alpha
Unique NameTCONS_00038501-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00038501-protein ID=TCONS_00038501-protein|Name=elongation factor 1-alpha|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MPIEKKPNKTKLHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEK
EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFTNNYEVTIIDAPG
HRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLG
VKQLIVGVNKIDNTEPPYSCDRFNEIAKEISAYVKKVGYNPKSVAVVPIS
GWHGDNMIEESKNMSWYKGWATEGKDEDKKDWKASGKTMLQALDSIRPPK
RPSSKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPVGLSTEV
KSVEMHHESLTEALPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVEN
FLAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEE
NPKMVKSGDAAMIELIPSKPMVVESFNDYAPLGRFAVRDMRQTVAVGVIK
GVTKKEKSDGKTTKSAAKAGGKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023087XLOC_023087Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00038501TCONS_00038501Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR004161EFTu-like_2
IPR004160Transl_elong_EFTu/EF1A_C
IPR004539Transl_elong_EF1A_euk/arc
IPR031157G_TR_CS
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR009000Transl_B-barrel
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Transcription factor, GTP-binding domainPRINTSPR00315ELONGATNFCTcoord: 154..163
score: 50.69
coord: 74..82
score: 77.92
coord: 94..104
score: 71.21
coord: 15..28
score: 74.83
coord: 110..121
score: 60.8
IPR000795Transcription factor, GTP-binding domainPROSITEPS51722G_TR_2coord: 11..253
score: 58.179
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 271..336
e-value: 1.7E-14
score: 53.8
NoneNo IPR availableGENE3D2.40.30.10coord: 347..460
e-value: 3.2E-44
score: 149.4
NoneNo IPR availablePFAMPF00009GTP_EFTUcoord: 12..244
e-value: 1.3E-51
score: 174.8
NoneNo IPR availableGENE3D2.40.30.10coord: 253..344
e-value: 3.7E-37
score: 125.9
NoneNo IPR availableGENE3D3.40.50.300coord: 8..249
e-value: 1.7E-40
score: 138.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 455..474
NoneNo IPR availableCDDcd03705EF1_alpha_IIIcoord: 346..449
e-value: 1.01737E-65
score: 207.813
NoneNo IPR availableCDDcd03693EF1_alpha_IIcoord: 255..343
e-value: 1.39985E-56
score: 183.522
NoneNo IPR availableCDDcd01883EF1_alphacoord: 15..250
e-value: 6.23912E-147
score: 420.744
IPR004160Translation elongation factor EFTu/EF1A, C-terminalPFAMPF03143GTP_EFTU_D3coord: 345..452
e-value: 3.9E-40
score: 136.5
IPR004539Translation elongation factor EF1A, eukaryotic/archaealTIGRFAMTIGR00483TIGR00483coord: 9..457
e-value: 2.5E-211
score: 699.6
IPR031157Tr-type G domain, conserved sitePROSITEPS00301G_TR_1coord: 67..82
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalSUPERFAMILY50465EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domaincoord: 349..452
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 255..344
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..272

Blast
[Close]
BLAST of elongation factor 1-alpha vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 753.821 bits (1945), Expect = 0.000e+0
Identity = 361/461 (78.31%), Postives = 400/461 (86.77%), Query Frame = 0 
Query:    9 KTKLHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFTNNYEVTIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKIDNTEPPYSCDRFNEIAKEISAYVKKVGYNPKSVAVVPISGWHGDNMIEESKNMSWYKGWATEGKDEDKKDWKASGKTMLQALDSIRPPKRPSSKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPVGLSTEVKSVEMHHESLTEALPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFLAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPKMVKSGDAAMIELIPSKPMVVESFNDYAPLGRFAVRDMRQTVAVGVIKGVTKKEKSDGKTTKSAAKA 469
            K K HINIVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF T+ Y VTIIDAPGHRDFIKNMITGTSQADCAVLIVA+  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNK+D+TEPPYS  R+ EI KE+S Y+KK+GYNP +VA VPISGW+GDNM+E S NM W+KGW        +KD  ASG T+L+ALD I PP RP+ KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFAPV ++TEVKSVEMHHE+L+EALPGDNVGFNVKNVSVK+++RG VA DSKNDP      F AQVIILNHPG+I AGY PVLDCHTAH+ACKFA L++KIDRRSGK LE+ PK +KSGDAA+++++P KPM VESF+DY PLGRFAVRDMRQTVAVGVIK V KK    GK TKSA KA
Sbjct:    3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVT-----RKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKA 458
The following BLAST results are available for this feature:
BLAST of elongation factor 1-alpha vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1A10.000e+078.31Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
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