TCONS_00038491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038491
Unique NameTCONS_00038491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1100

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038491 ID=TCONS_00038491|Name=TCONS_00038491|organism=Clytia hemisphaerica|type=transcript|length=1100bp
AGTAAGTAAACTCCAAATGACAAATGTAAATTAGTGTTTGGCAAGCAAAA
CATTACTAAATATTTAACGAAATATAAATTTTTTGCTATATCAATAATAA
AACATAAAATGTGAGATGCTAAAATCAAAAAGTAAACAAAAAATAACTTG
GTCAAACTGTGAAATGGAGGTATCTTACCCTCACCCATTGATTTTACCCA
ATTTCATAGTACAACAAAAAATCCTAGGTCATATATGaagaaatcaatca
ataaaGTTAACTGTTAATATATGTGCTAATTGATAAGTCACTCTCCTTGT
TTCTTTCCAACATACTTGCACCGTTCATTGCAGACATGTGCCTTCAAAAA
TTTCTGAATAGCTTCTTCACCCCAATTACCAGAGCAGAAGTACATTTTAT
TTGAGCTTTCATCATATGTGTTTTTGCTTGCTATTTCAGGGTCACTCAGC
GTAAAATTGACTCCTTGAAGATCAACAACCATTATTGTTTGTTCAGAGTC
AATGTAAGTAAAGTGTGCGAATGTTTCAGCTtttttcaacttgatttcat
cattaACACCTTGATTTATTGCTCCATCATTGTTCACGTATTTGACAAAT
TCACCTTCAAGATATTTCTCAACAGTGACAAAGCGATCTTTTTTGCCATC
ATGAAACTTTCCATAGAAGAGCTTGGTATaagtgaaattttcaccaaagt
cCTGTGGGACTGAAAGAGCAAATTTCATTGCCAAATGCCTGGCAAGCGAA
TGCATTTGGACCGTTTTACGTGCATGTTCTTCTTCTGTAAAGGCTCTTTC
AGTCAGAACATTGACTTTATCTTCCTGAAACATCTTTACCACATATTCCC
CATATAATTTGTTGTAAGCAAAGGCTTTGAAAACGTCACGAAAGCCTCCA
TGATCAAACGGTTTGTCCTCTAGTGACATTTTAACTTCAATCGCTGGGAG
CCATCTCTGAGATGCAACACTAAACTCTTCTAAcataaaaactttatatt
ttgaagAGTTTGGTTCAATGAACTGTcctattttcattatttttgacgGT
GGTAATGACACCAACTTCCTATTGTTGATGTTTACTACAGGCAATCTGCT
Run BLAST on NCBI

protein sequence of TCONS_00038491-protein

>TCONS_00038491-protein ID=TCONS_00038491-protein|Name=TCONS_00038491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
SRLPVVNINNRKLVSLPPSKIMKIGQFIEPNSSKYKVFMLEEFSVASQRW
LPAIEVKMSLEDKPFDHGGFRDVFKAFAYNKLYGEYVVKMFQEDKVNVLT
ERAFTEEEHARKTVQMHSLARHLAMKFALSVPQDFGENFTYTKLFYGKFH
DGKKDRFVTVEKYLEGEFVKYVNNDGAINQGVNDEIKLKKAETFAHFTYI
DSEQTIMVVDLQGVNFTLSDPEIASKNTYDESSNKMYFCSGNWGEEAIQK
FLKAHVCNERCKYVGKKQGE
Run BLAST on NCBI

transcript from alignment at sc0001864:17019..18118

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038491 ID=TCONS_00038491|Name=TCONS_00038491|organism=Clytia hemisphaerica|type=transcript|length=1100bp|location=Sequence derived from alignment at sc0001864:17019..18118 (Clytia hemisphaerica)
AGCAGATTGCCTGTAGTAAACATCAACAATAGGAAGTTGGTGTCATTACC
ACcgtcaaaaataatgaaaataggACAGTTCATTGAACCAAACTcttcaa
aatataaagtttttatgTTAGAAGAGTTTAGTGTTGCATCTCAGAGATGG
CTCCCAGCGATTGAAGTTAAAATGTCACTAGAGGACAAACCGTTTGATCA
TGGAGGCTTTCGTGACGTTTTCAAAGCCTTTGCTTACAACAAATTATATG
GGGAATATGTGGTAAAGATGTTTCAGGAAGATAAAGTCAATGTTCTGACT
GAAAGAGCCTTTACAGAAGAAGAACATGCACGTAAAACGGTCCAAATGCA
TTCGCTTGCCAGGCATTTGGCAATGAAATTTGCTCTTTCAGTCCCACAGg
actttggtgaaaatttcacttATACCAAGCTCTTCTATGGAAAGTTTCAT
GATGGCAAAAAAGATCGCTTTGTCACTGTTGAGAAATATCTTGAAGGTGA
ATTTGTCAAATACGTGAACAATGATGGAGCAATAAATCAAGGTGTtaatg
atgaaatcaagttgaaaaaAGCTGAAACATTCGCACACTTTACTTACATT
GACTCTGAACAAACAATAATGGTTGTTGATCTTCAAGGAGTCAATTTTAC
GCTGAGTGACCCTGAAATAGCAAGCAAAAACACATATGATGAAAGCTCAA
ATAAAATGTACTTCTGCTCTGGTAATTGGGGTGAAGAAGCTATTCAGAAA
TTTTTGAAGGCACATGTCTGCAATGAACGGTGCAAGTATGTTGGAAAGAA
ACAAGGAGAGTGACTTATCAATTAGCACATATATTAACAGTTAACtttat
tgattgatttcttCATATATGACCTAGGATTTTTTGTTGTACTATGAAAT
TGGGTAAAATCAATGGGTGAGGGTAAGATACCTCCATTTCACAGTTTGAC
CAAGTTATTTTTTGTTTACTTTTTGATTTTAGCATCTCACATTTTATGTT
TTATTATTGATATAGCAAAAAATTTATATTTCGTTAAATATTTAGTAATG
TTTTGCTTGCCAAACACTAATTTACATTTGTCATTTGGAGTTTACTTACT

Coding sequence (CDS) from alignment at sc0001864:17019..18118

>TCONS_00038491 ID=TCONS_00038491|Name=TCONS_00038491|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0001864:17019..18118 (Clytia hemisphaerica)
AGCAGATTGCCTGTAGTAAACATCAACAATAGGAAGTTGGTGTCATTACC
ACcgtcaaaaataatgaaaataggACAGTTCATTGAACCAAACTcttcaa
aatataaagtttttatgTTAGAAGAGTTTAGTGTTGCATCTCAGAGATGG
CTCCCAGCGATTGAAGTTAAAATGTCACTAGAGGACAAACCGTTTGATCA
TGGAGGCTTTCGTGACGTTTTCAAAGCCTTTGCTTACAACAAATTATATG
GGGAATATGTGGTAAAGATGTTTCAGGAAGATAAAGTCAATGTTCTGACT
GAAAGAGCCTTTACAGAAGAAGAACATGCACGTAAAACGGTCCAAATGCA
TTCGCTTGCCAGGCATTTGGCAATGAAATTTGCTCTTTCAGTCCCACAGg
actttggtgaaaatttcacttATACCAAGCTCTTCTATGGAAAGTTTCAT
GATGGCAAAAAAGATCGCTTTGTCACTGTTGAGAAATATCTTGAAGGTGA
ATTTGTCAAATACGTGAACAATGATGGAGCAATAAATCAAGGTGTtaatg
atgaaatcaagttgaaaaaAGCTGAAACATTCGCACACTTTACTTACATT
GACTCTGAACAAACAATAATGGTTGTTGATCTTCAAGGAGTCAATTTTAC
GCTGAGTGACCCTGAAATAGCAAGCAAAAACACATATGATGAAAGCTCAA
ATAAAATGTACTTCTGCTCTGGTAATTGGGGTGAAGAAGCTATTCAGAAA
TTTTTGAAGGCACATGTCTGCAATGAACGGTGCAAGTATGTTGGAAAGAA
ACAAGGAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023078XLOC_023078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038491-exon-sc0001864-1491911889:17019..18118TCONS_00038491-exon-sc0001864-1491911889:17019..18118Clytia hemisphaericaexon
TCONS_00038491-exon-sc0001864-1510915933:17019..18118TCONS_00038491-exon-sc0001864-1510915933:17019..18118Clytia hemisphaericaexon
TCONS_00038491-exon-sc0001864-1575043694:17019..18118TCONS_00038491-exon-sc0001864-1575043694:17019..18118Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038491-proteinTCONS_00038491-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001864supercontigsc0001864:17019..18118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119454	0	0	0	0.0536967	0.169727	0.102384	0.095851	0.0335538	0.124685	0.0806817	0.212148	0.211853	0.0825043	0.0904397	0.145583	0.179347	0.12255	0.0423273	0	0.0769964	0	0.0456544	0.083013	0.0855014	0.19077	0.163795	0.0582687	0	0.0900549
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004166MHCK_EF2_kinase
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Blast
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BLAST of TCONS_00038491 vs. Swiss-Prot (Human)
Match: TRPM6 (Transient receptor potential cation channel subfamily M member 6 OS=Homo sapiens GN=TRPM6 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.754e-16
Identity = 56/174 (32.18%), Postives = 84/174 (48.28%), Query Frame = -1 
Query:  315 KMFQEDKVNVLTERAFTEEEHARKTVQMHSLARHLAMKFALSVPQDFGENFTYTKLFYGKFHDGKKDRFVTVEKYLEGEFVKYVNNDGAINQGVNDEIKLKKAETFAHFTYIDSEQTIMVVDLQGVNFTLSDPEIASKNTYDESSNKMYFCSGNWGEEAIQKFLKAHVCNERCK 836
            K+FQE  V  L  R   ++  A+K          L   F    PQ       + ++F    H    ++++T+EKY+ GEF KY NN+G      N   +L  A  F+H+TY  +   ++V+DLQGV   L+DP +       + S  M F   N GE+AI+ F+  H CN  C+
Sbjct: 1816 KIFQESTVLHLCLREIQQQRAAQK----------LIYTFNQVKPQTIPYTPRFLEVFLIYCHSA--NQWLTIEKYMTGEFRKYNNNNGDEITPTNTLEELMLA--FSHWTYEYTRGELLVLDLQGVGENLTDPSVIKPEV--KQSRGMVFGPANLGEDAIRNFIAKHHCNSCCR 1973
The following BLAST results are available for this feature:
BLAST of TCONS_00038491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPM62.754e-1632.18Transient receptor potential cation channel subfam... [more]
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