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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038485 ID=TCONS_00038485|Name=TCONS_00038485|organism=Clytia hemisphaerica|type=transcript|length=2963bpRun BLAST on NCBI protein sequence of TCONS_00038485-protein >TCONS_00038485-protein ID=TCONS_00038485-protein|Name=TCONS_00038485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp MSYNKRERNSSMNSYGGNNRNSSPHSQYHHSKVNNNRQRSTSSPVTVSQARun BLAST on NCBI transcript from alignment at sc0001862:21557..36024- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00038485 ID=TCONS_00038485|Name=TCONS_00038485|organism=Clytia hemisphaerica|type=transcript|length=14468bp|location=Sequence derived from alignment at sc0001862:21557..36024- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001862:21557..36024- >TCONS_00038485 ID=TCONS_00038485|Name=TCONS_00038485|organism=Clytia hemisphaerica|type=CDS|length=35028bp|location=Sequence derived from alignment at sc0001862:21557..36024- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00038485 vs. Swiss-Prot (Human)
Match: CSDE1 (Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1 PE=1 SV=2) HSP 1 Score: 509.22 bits (1310), Expect = 1.677e-165 Identity = 319/798 (39.97%), Postives = 454/798 (56.89%), Query Frame = 1
Query: 490 HNQY-----YGKKEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTDPRNNKPIAIKLNKLPAGSVVVETLSEESCIGRI------EMEAK-PQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNLQDRLGKEIAVSIKKLSPGTVVFEDISENRFKGHVIKAIGPKSMNSSMDGQLTGMIEYQGKTD---THEVLFGDRDMEDDIILQKGDVVEFNVSTDRRDKLQRAVNIKLISVCLK-NGQTREVGVVSSLKEGFGFIKCADQDLSIFFHFSEVLEQSHLINLGDEVEFTIQNDQIS-QRQHATRIRFLPKGTVSFEIISSKRHVGVIDREAPERQLK--SPSK-TNRENEFGIIKCYLEGQETDILYRVRDCRPREMVRYRDKVEFVLVTKKTNQQRFARDVSILEK-SETKMLHGYVCALKDSYGFIETEDHTTELFFHFSEYEGDTKQLELGSYVMYAETR-KGEKRSAEKVCKILS-HVCKDEILPQTYDGVITRPMRTMDPDQDEYEGLIQLSRASANXXXXXXXHNAXXXXXXXXXXXXXXILDDSTASTNGDAENGEDEKSPATNGEQQQLVYRFGITAIMEKKEAIQVGDKVSFQICIDAVTKKKRACNVACKRSLLRGKVESVKGQFGFIAYNHDDGKSVFFHMSEVQNENGKELKQGDEVSFMLVQNHKNAKKSAIRVQKI 2814
HN Y +E G++EKLL SYGF++C+ R+FFH S++ G+ L+VGD ++F +++D R KPIA+KL K+ E L EE G++ +E+K P G+ S G V Y+++GE F+L ++ DV + GD + F I NK TG++ AR I K+ QG+V ++KEA+GFIER DVV EIFFHYSE+ D+ L GDDV+F ++DR GKE+A ++ L GTV+FEDIS F+G V K I PK + + + L G I K D E+ FGD+D + + L +GD V FN+STDRRDKL+RA NI+++S + + RE+GV++++++GFGFIKC D+D+ +FFHFSE+L+ + L ++ DEVEFT+ D +S QR HA RI+ LPKGTVSF S R +G +++EA K SP+K +E E GII G + I ++ +D + DKVEF + K+ Q+ A V +L + S +K L GYV LKD++GFIET +H E+FFH+SE+ GD LELG V Y+ ++ KG K SAEKV K S + +E P Y G + RP+R++DP Q EY+G+I++ E G+ GE VY FGI + K + +Q G+ V FQ+C+ + A N+ L R VE VK QFGFI Y D K +FFH+ EVQ +G EL+ GDEV F ++ N + K SA V ++
Sbjct: 13 HNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ-----EILPEERMNGQVVCAVPHNLESKSPAAPGQ--SPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLL--KKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI-PKVPSKNQNDPLPGRI----KVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQL-HIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEI------------------------------------------VEEGD------MKGE----VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNIT---PLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ--DGIELQAGDEVEFSVILNQRTGKCSACNVWRV 738 HSP 2 Score: 157.147 bits (396), Expect = 3.112e-39 Identity = 134/464 (28.88%), Postives = 221/464 (47.63%), Query Frame = 1
Query: 511 KEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTD----PRNNKPIAIKLNKLPAGSVVVETLSEESCIGRIEMEA--------KPQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNLQDRLGKEI-AVSIKKLSPGTVVFEDISENRFKGHVIKAIGPKSMNSSMDGQLTGMIEYQGKTDTHEVLFGDRDMEDDIILQKGDVVEFNV--STDRRDKLQRAVNIKL-ISVCLKNGQTREVGV-------VSSLKEGFGFIKCADQDLS-IFFHFSEVLEQSHLINLGDEVEFTIQNDQISQRQHATRIRFLPKGTVSF------EIISSKRHVGVIDREAPERQ-LKSPSKTNRENEFG 1809
+E G++ + + +GF++C R+FFH+SE D N L + D ++F + D RN+ AI++ KLP G+V + S+ +G +E EA P + E E+ G ++YD G + F DV + GD VEF I+ +R G A +R K + G V++LK+ +GFIE A+ EIFFHYSE+S D++ L +GD V+++L G ++ A + K + E+ + G VI+ + S+D T EYQG + E + DM KG+V F + ++ D LQ+ ++K + V +N QT + V +K+ FGFI D +FFH EV + L GDEVEF++ +Q + + A + + +G + +++ +++ + D AP L+ P + FG
Sbjct: 348 REMGVIAAMRDGFGFIKCVDRDVRMFFHFSEIL-DGNQLHIADEVEFTVVPDMLSAQRNH---AIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPL------RSVDPTQT---EYQGMIEIVE----EGDM-------KGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIEL-QAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFG 786 The following BLAST results are available for this feature:
BLAST of TCONS_00038485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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