TCONS_00038485-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00038485-protein
Unique Name	TCONS_00038485-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	833

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00038485-protein ID=TCONS_00038485-protein|Name=TCONS_00038485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp
MSYNKRERNSSMNSYGGNNRNSSPHSQYHHSKVNNNRQRSTSSPVTVSQA
NDSPSSQHNQYYGKKEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDP
NHLQVGDCLDFVLTTDPRNNKPIAIKLNKLPAGSVVVETLSEESCIGRIE
MEAKPQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEF
YIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDE
IFFHYSEYSADINELMIGDDVQFNLQDRLGKEIAVSIKKLSPGTVVFEDI
SENRFKGHVIKAIGPKSMNSSMDGQLTGMIEYQGKTDTHEVLFGDRDMED
DIILQKGDVVEFNVSTDRRDKLQRAVNIKLISVCLKNGQTREVGVVSSLK
EGFGFIKCADQDLSIFFHFSEVLEQSHLINLGDEVEFTIQNDQISQRQHA
TRIRFLPKGTVSFEIISSKRHVGVIDREAPERQLKSPSKTNRENEFGIIK
CYLEGQETDILYRVRDCRPREMVRYRDKVEFVLVTKKTNQQRFARDVSIL
EKSETKMLHGYVCALKDSYGFIETEDHTTELFFHFSEYEGDTKQLELGSY
VMYAETRKGEKRSAEKVCKILSHVCKDEILPQTYDGVITRPMRTMDPDQD
EYEGLIQLSRASANKQQKQQKHNASLNGSLNGSSLNGSILDDSTASTNGD
AENGEDEKSPATNGEQQQLVYRFGITAIMEKKEAIQVGDKVSFQICIDAV
TKKKRACNVACKRSLLRGKVESVKGQFGFIAYNHDDGKSVFFHMSEVQNE
NGKELKQGDEVSFMLVQNHKNAKKSAIRVQKIM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_023073	XLOC_023073	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00038485	TCONS_00038485	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011129	CSD
IPR002059	CSP_DNA-bd
IPR019844	Cold-shock_CS
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 559..620 e-value: 3.2E-8 score: 43.3 coord: 767..832 e-value: 1.5E-11 score: 54.4 coord: 67..130 e-value: 1.4E-7 score: 41.2 coord: 229..290 e-value: 5.1E-12 score: 55.9 coord: 393..456 e-value: 6.1E-8 score: 42.4
None	No IPR available	GENE3D	2.40.50.140		coord: 298..384 e-value: 0.0053 score: 16.2
None	No IPR available	GENE3D	2.40.50.140		coord: 390..462 e-value: 2.2E-17 score: 62.3 coord: 469..556 e-value: 0.0025 score: 17.2 coord: 158..225 e-value: 2.3E-5 score: 23.7 coord: 227..296 e-value: 8.5E-12 score: 44.4 coord: 766..833 e-value: 8.5E-15 score: 54.0
None	No IPR available	GENE3D	2.40.50.140		coord: 43..148 e-value: 2.6E-14 score: 52.6
None	No IPR available	GENE3D	2.40.50.140		coord: 709..761 e-value: 0.0031 score: 17.1 coord: 557..621 e-value: 1.5E-8 score: 34.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 662..715
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 767..831 e-value: 1.1E-12 score: 47.5 coord: 559..619 e-value: 1.1E-12 score: 47.5 coord: 67..129 e-value: 9.6E-10 score: 38.1 coord: 394..452 e-value: 7.0E-10 score: 38.5 coord: 229..289 e-value: 6.7E-13 score: 48.2
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 394..455 e-value: 1.32782E-6 score: 45.6474
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 767..831 e-value: 1.59685E-10 score: 57.2034
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 228..289 e-value: 1.04841E-7 score: 49.1142
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 569..617 e-value: 1.48442E-7 score: 48.729
IPR019844	Cold-shock conserved site	PROSITE	PS00352	COLD_SHOCK	coord: 569..588
IPR019844	Cold-shock conserved site	PROSITE	PS00352	COLD_SHOCK	coord: 239..258
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 765..831
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 385..460
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 62..134
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 553..620
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 225..295

Blast

[Close]

BLAST of TCONS_00038485-protein vs. Swiss-Prot (Human)
Match: CSDE1 (Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1 PE=1 SV=2)

HSP 1 Score: 511.146 bits (1315), Expect = 7.537e-170
Identity = 317/798 (39.72%), Postives = 452/798 (56.64%), Query Frame = 0

Query:   58 HNQY-----YGKKEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTDPRNNKPIAIKLNKLPAGSVVVETLSEESCIGRI------EMEAK-PQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNLQDRLGKEIAVSIKKLSPGTVVFEDISENRFKGHVIKAIGPKSMNSSMDGQLTGMIEYQGKTD---THEVLFGDRDMEDDIILQKGDVVEFNVSTDRRDKLQRAVNIKLISVCLK-NGQTREVGVVSSLKEGFGFIKCADQDLSIFFHFSEVLEQSHLINLGDEVEFTIQNDQIS-QRQHATRIRFLPKGTVSFEIISSKRHVGVIDREAPERQLK--SPSK-TNRENEFGIIKCYLEGQETDILYRVRDCRPREMVRYRDKVEFVLVTKKTNQQRFARDVSILEK-SETKMLHGYVCALKDSYGFIETEDHTTELFFHFSEYEGDTKQLELGSYVMYAETR-KGEKRSAEKVCKILS-HVCKDEILPQTYDGVITRPMRTMDPDQDEYEGLIQLSRASANKQQKQQKHNASLNGSLNGSSLNGSILDDSTASTNGDAENGEDEKSPATNGEQQQLVYRFGITAIMEKKEAIQVGDKVSFQICIDAVTKKKRACNVACKRSLLRGKVESVKGQFGFIAYNHDDGKSVFFHMSEVQNENGKELKQGDEVSFMLVQNHKNAKKSAIRVQKI 832
            HN Y        +E G++EKLL SYGF++C+    R+FFH S++ G+   L+VGD ++F +++D R  KPIA+KL K+       E L EE   G++       +E+K P   G+  S  G V Y+++GE F+L ++  DV     +  GD + F I  NK TG++ AR I      K+    QG+V ++KEA+GFIER DVV EIFFHYSE+  D+  L  GDDV+F ++DR GKE+A  ++ L  GTV+FEDIS   F+G V K I PK  + + +  L G I    K D     E+ FGD+D +  + L +GD V FN+STDRRDKL+RA NI+++S   +   + RE+GV++++++GFGFIKC D+D+ +FFHFSE+L+ + L ++ DEVEFT+  D +S QR HA RI+ LPKGTVSF   S  R +G +++EA     K  SP+K   +E E GII     G +  I ++ +D       +  DKVEF +  K+   Q+ A  V +L + S +K L GYV  LKD++GFIET +H  E+FFH+SE+ GD   LELG  V Y+ ++ KG K SAEKV K  S +   +E  P  Y G + RP+R++DP Q EY+G+I++                   G + G                                     VY FGI  +  K + +Q G+ V FQ+C+     +  A N+     L R  VE VK QFGFI Y   D K +FFH+ EVQ  +G EL+ GDEV F ++ N +  K SA  V ++
Sbjct:   13 HNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ-----EILPEERMNGQVVCAVPHNLESKSPAAPGQ--SPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLL--KKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI-PKVPSKNQNDPLPGRI----KVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQL-HIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVE----------------EGDMKGE------------------------------------VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNIT---PLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ--DGIELQAGDEVEFSVILNQRTGKCSACNVWRV 738

HSP 2 Score: 157.147 bits (396), Expect = 1.303e-39
Identity = 134/464 (28.88%), Postives = 221/464 (47.63%), Query Frame = 0

Query:   65 KEKGIVEKLLNSYGFVECATTGNRVFFHYSEFEGDPNHLQVGDCLDFVLTTD----PRNNKPIAIKLNKLPAGSVVVETLSEESCIGRIEMEA--------KPQRNGEAESTLGRVSYDKSGEFFFLPFSLNDVAKGETINKGDTVEFYIATNKRTGSMKARKIRYSDPAKQVKTVQGIVSSLKEAYGFIERADVVDEIFFHYSEYSADINELMIGDDVQFNLQDRLGKEI-AVSIKKLSPGTVVFEDISENRFKGHVIKAIGPKSMNSSMDGQLTGMIEYQGKTDTHEVLFGDRDMEDDIILQKGDVVEFNV--STDRRDKLQRAVNIKL-ISVCLKNGQTREVGV-------VSSLKEGFGFIKCADQDLS-IFFHFSEVLEQSHLINLGDEVEFTIQNDQISQRQHATRIRFLPKGTVSF------EIISSKRHVGVIDREAPERQ-LKSPSKTNRENEFG 497
            +E G++  + + +GF++C     R+FFH+SE   D N L + D ++F +  D     RN+   AI++ KLP G+V   + S+   +G +E EA         P +  E E+  G ++YD  G    + F   DV    +   GD VEF I+  +R G   A  +R        K + G V++LK+ +GFIE A+   EIFFHYSE+S D++ L +GD V+++L    G ++ A  + K      + E+     + G VI+ +       S+D   T   EYQG  +  E    + DM       KG+V  F +    ++ D LQ+  ++K  + V  +N QT    +       V  +K+ FGFI     D   +FFH  EV +   L   GDEVEF++  +Q + +  A  +  + +G  +        +++  +++ + D  AP    L+ P   +    FG
Sbjct:  348 REMGVIAAMRDGFGFIKCVDRDVRMFFHFSEIL-DGNQLHIADEVEFTVVPDMLSAQRNH---AIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPL------RSVDPTQT---EYQGMIEIVE----EGDM-------KGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIEL-QAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFG 786

The following BLAST results are available for this feature:

BLAST of TCONS_00038485-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00038485-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CSDE1	7.537e-170	39.72	Cold shock domain-containing protein E1 OS=Homo sa...	[more]

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TCONS_00038485-protein (polypeptide) - C. hemisphaerica