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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038443 ID=TCONS_00038443|Name=TCONS_00038443|organism=Clytia hemisphaerica|type=transcript|length=1425bp
GTTATGGAACCACTCACAAAGTCAACAACCTTATCATTCAAAAGAGCCAA
GGTTCGTTTACAGACGTTGCGAGACGAAAATCAGACCCAAAAACAAAACG
TGGACAAGGATCATTCAAGGCGAATCAAGAAACCCCCAGCGTCGAGTATG
TCAAAACCAAACGTATTGGTCCGCCAACAGCAGAGTTCGTTGAAAATGAA
GAGAGTGCACTTTTGATTGACGACGTAAATCAACGTCATTTCCTTTGGTG
TTTGATGCGTCACAATGATAGCGTACCTTACATTGTACCAAGCTGGACTG
GTTTTCAGATTTCTATTTGCAACAAGATACCAACCTTAAAATCCAACATC
GCATACCTTGATTGTATTTATGCACCTGCCACTCAAATCTCAACTATCTA
TCAGgtTATGGATCGTGCATTAAAAATCATCGATGGACTGAACCTACAAA
ATATGGTTTGTGTATTTGATCAAGCAATTTACTAAAAGGCTGTCGAGATC
AAATGGAAAGAACCTCGCAAGTTTAAAGATGTTTTCATTATGCTTGGAAT
GTTCCACATGATTGTGATGTTTATGGGAATTTTAAGCAAACGATTTTCCG
CAGCTGGAGTTCGTGATATTCTCGTCCAAAGCAACACAATTTCAGAGGGA
TCTGTTGACCAAGCACTTTGTGGTAAACAATATAACCGTGGAGTGCGTTG
TTACAAGCTAATGTATGAGGCAGTGATGAGGAGAGTGCTTGAAGAGATCA
AGATGGAAGCTGGTGACATCATCTATATGGACGACTTCGAGACTATTCAA
TTCAATCAAGACTTCGTCAAGAAATACACCGAATTCCTTGATTTCAGAGA
AGCACTTGAAAGAGGCTATCCCCTTCAGAAGTTCTGGATGAGTTTCCTTA
AGATGACAGAAATACTCTTAAGCACGATCTATTCATTGAGAAGTGGTCAT
TTTGAGCTTCTTGTAGAATGCATAAGGTTGATCATTCCTTTTGCTTTTGC
ATACGATCACATCAATTATGCCAGGTATCTAACAGCTATGCTTGCAGATC
TTCTCAAATTACCGGAAGAATTTCCAAATATTCACGAAGAATTTATGAAT
GGCAATTTCGTGGCTCAACTTACGGATGGAACAAAGTTTTCCCGTGTGGA
AACAGACAAGGTGATTGAGATGACACTCAACAAGGATACAAAAACTCCAG
GTGGAACAACTGGATTCTCAACAAACGTCAACGCTGTGAAGAGATGGGAG
GTCAATGCTTCATACAGAGCTGCTCTCAGAACATGTTTTCACAAGCATCT
TAATTTCTCTAAAAAGAAGCACGCCCATCCTGATTTCGGACCAACAAGGA
TCACTAAAGATCAACAAGCAATTCACGAGATCTTGAACATTATGACACAT
CGCTTCATCGATCCGATCAGTGAAC Run BLAST on NCBI protein sequence of TCONS_00038443-protein >TCONS_00038443-protein ID=TCONS_00038443-protein|Name=TCONS_00038443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MLGMFHMIVMFMGILSKRFSAAGVRDILVQSNTISEGSVDQALCGKQYNR
GVRCYKLMYEAVMRRVLEEIKMEAGDIIYMDDFETIQFNQDFVKKYTEFL
DFREALERGYPLQKFWMSFLKMTEILLSTIYSLRSGHFELLVECIRLIIP
FAFAYDHINYARYLTAMLADLLKLPEEFPNIHEEFMNGNFVAQLTDGTKF
SRVETDKVIEMTLNKDTKTPGGTTGFSTNVNAVKRWEVNASYRAALRTCF
HKHLNFSKKKHAHPDFGPTRITKDQQAIHEILNIMTHRFIDPISE Run BLAST on NCBI transcript from alignment at sc0001854:3734..5475+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038443 ID=TCONS_00038443|Name=TCONS_00038443|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at sc0001854:3734..5475+ (Clytia hemisphaerica)
GTTATGGAACCACTCACAAAGTCAACAACCTTATCATTCAAAAGAGCCAA
GGTTCGTTTACAGACGTTGCGAGACGAAAATCAGACCCAAAAACAAAACG
TGGACAAGGATCATTCAAGGCGAATCAAGAAACCCCCAGCGTCGAGTATG
TCAAAACCAAACGTATTGGTCCGCCAACAGCAGAGTTCGTTGAAAATGAA
GAGAGTGCACTTTTGATTGACGACGTAAATCAACGTCATTTCCTTTGGTG
TTTGATGCGTCACAATGATAGCGTACCTTACATTGTACCAAGCTGGACTG
GTTTTCAGATTTCTATTTGCAACAAGATACCAACCTTAAAATCCAACATC
GCATACCTTGATTGTATTTATGCACCTGCCACTCAAATCTCAACTATCTA
TCAGGTAATTTTTTTACATGATATTATACTTGTGACTACAGCTAACTATA
AACTAGCATATTGAAAAGGTTTGATGTTTATCATTCAAGAGATAATAAAT
TGCTCATCGcttatttaaattttctttgtttctaaggtTATGGATCGTGC
ATTAAAAATCATCGATGGACTGAACCTACAAAATATGGTTTGTGTATTTG
ATCAAGCAATTTACTAAAAGGCTGTCGAGATCAAATGGAAAGAACCTCGC
AAGTTTAAAGATGTTTTCATTATGCTTGGAATGTTCCACATGATTGTGAT
GTTTATGGGAATTTTAAGCAAACGATTTTCCGCAGCTGGAGTTCGTGATA
TTCTCGTCCAAAGCAACACAATTTCAGAGGGATCTGTTGACCAAGCACTT
TGTGGTAAACAATATAACCGTGGAGTGCGTTGTTACAAGCTAATGTATGA
GGCAGTGATGAGGAGAGTGCTTGAAGAGATCAAGATGGAAGCTGGTGACA
TCATCTATATGGACGACTTCGAGACTATTCAATTCAATCAAGACTTCGTC
AAGAAATACACCGAATTCCTTGATTTCAGAGAAGCACTTGAAAGAGGCTA
TCCCCTTCAGAAGTTCTGGATGAGTTTCCTTAAGATGACAGAAATACTCT
TAAGCACGATCTATTCATTGAGAAGTGGTCATTTTGAGCTTCTTGTAGAA
TGCATAAGGTTGATCATTCCTTTTGCTTTTGCATACGATCACATCAATTA
TGCCAGGTATCTAACAGCTATGCTTGCAGATCTTCTCAAATTACCGGAAG
AATTTCCAAATATTCACGAAGAATTTATGAATGGCAATTTCGTGGCTCAA
CTTACGGATGGAACAAAGTTTTCCCGTGTGGAAACAGACAAGGTGATTGA
GATGACACTCAACAAGGATACAAAAACTCCAGGTAACGattgaaagtgat
tttttaTGATCTCATGAATTTAAATTACATCTCTTAACATTACTATATAG
CTGTTTATTTTGCAATCTCCAGCGCTTGACTTTGCTCGTGTTTCTATATA
TGCTGCTGTAATTATAATTATATGGTTATCCTAAAGTGCTTTGTTCTCCT
TCTCTATTATCGTTCAGGTGGAACAACTGGATTCTCAACAAACGTCAACG
CTGTGAAGAGATGGGAGGTCAATGCTTCATACAGAGCTGCTCTCAGAACA
TGTTTTCACAAGCATCTTAATTTCTCTAAAAAGAAGCACGCCCATCCTGA
TTTCGGACCAACAAGGATCACTAAAGATCAACAAGCAATTCACGAGATCT
TGAACATTATGACACATCGCTTCATCGATCCGATCAGTGAAC Coding sequence (CDS) from alignment at sc0001854:3734..5475+ >TCONS_00038443 ID=TCONS_00038443|Name=TCONS_00038443|organism=Clytia hemisphaerica|type=CDS|length=1770bp|location=Sequence derived from alignment at sc0001854:3734..5475+ (Clytia hemisphaerica)
ATGCTTGGAATGTTCCACATGATTGTGATGTTTATGGGAATTTTAAGCAA
ACGATTTTCCGCAGCTGGAGTTCGTGATATTCTCGTCCAAAGCAACACAA
TTTCAGAGGGATCTGTTGACCAAGCACTTTGTGGTAAACAATATAACCGT
GGAGTGCGTTGTTACAAGCTAATGTATGAGGCAGTGATGAGGAGAGTGCT
TGAAGAGATCAAGATGGAAGCTGGTGACATCATCTATATGGACGACTTCG
AGACTATTCAATTCAATCAAGACTTCGTCAAGAAATACACCGAATTCCTT
GATTTCAGAGAAGCACTTGAAAGAGGCTATCCCCTTCAGAAGTTCTGGAT
GAGTTTCCTTAAGATGACAGAAATACTCTTAAGCACGATCTATTCATTGA
GAAGTGGTCATTTTGAGCTTCTTGTAGAATGCATAAGGTTGATCATTCCT
TTTGCTTTTGCATACGATCACATCAATTATGCCAGGTATCTAACAGCTAT
GCTTGCAGATCTTCTCAAATTACCGGAAGAATTTCCAAATATTCACGAAG
AATTTATGAATGGCAATTTCGTGGCTCAACTTACGGATGGAACAAAGTTT
TCCCGTGTGGAAACAGACAAGGTGATTGAGATGACACTCAACAAGGATAC
AAAAACTCCAGGTGGAACAACTGGATTCTCAACAAACGTCAACGCTGTGA
AGAGATGGGAGGTCAATGCTTCATACAGAGCTGCTCTCAGAACATGTTTT
CACAAGCATCTTAATTTCTCTAAAAAGAAGCACGCCCATCCTGATTTCGG
ACCAACAAGGATCACTAAAGATCAACAAGCAATTCACGAGATCTTGAACA
TTATGACACATCGCTTCATCGATCCGATCAGTGAAATGCTTGGAATGTTC
CACATGATTGTGATGTTTATGGGAATTTTAAGCAAACGATTTTCCGCAGC
TGGAGTTCGTGATATTCTCGTCCAAAGCAACACAATTTCAGAGGGATCTG
TTGACCAAGCACTTTGTGGTAAACAATATAACCGTGGAGTGCGTTGTTAC
AAGCTAATGTATGAGGCAGTGATGAGGAGAGTGCTTGAAGAGATCAAGAT
GGAAGCTGGTGACATCATCTATATGGACGACTTCGAGACTATTCAATTCA
ATCAAGACTTCGTCAAGAAATACACCGAATTCCTTGATTTCAGAGAAGCA
CTTGAAAGAGGCTATCCCCTTCAGAAGTTCTGGATGAGTTTCCTTAAGAT
GACAGAAATACTCTTAAGCACGATCTATTCATTGAGAAGTGGTCATTTTG
AGCTTCTTGTAGAATGCATAAGGTTGATCATTCCTTTTGCTTTTGCATAC
GATCACATCAATTATGCCAGGTATCTAACAGCTATGCTTGCAGATCTTCT
CAAATTACCGGAAGAATTTCCAAATATTCACGAAGAATTTATGAATGGCA
ATTTCGTGGCTCAACTTACGGATGGAACAAAGTTTTCCCGTGTGGAAACA
GACAAGGTGATTGAGATGACACTCAACAAGGATACAAAAACTCCAGGTGG
AACAACTGGATTCTCAACAAACGTCAACGCTGTGAAGAGATGGGAGGTCA
ATGCTTCATACAGAGCTGCTCTCAGAACATGTTTTCACAAGCATCTTAAT
TTCTCTAAAAAGAAGCACGCCCATCCTGATTTCGGACCAACAAGGATCAC
TAAAGATCAACAAGCAATTCACGAGATCTTGAACATTATGACACATCGCT
TCATCGATCCGATCAGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038443-exon-sc0001854-1491911889:3734..4137 | TCONS_00038443-exon-sc0001854-1491911889:3734..4137 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1510915933:3734..4137 | TCONS_00038443-exon-sc0001854-1510915933:3734..4137 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1575043694:3734..4137 | TCONS_00038443-exon-sc0001854-1575043694:3734..4137 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1491911889:4270..5065 | TCONS_00038443-exon-sc0001854-1491911889:4270..5065 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1510915933:4270..5065 | TCONS_00038443-exon-sc0001854-1510915933:4270..5065 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1575043694:4270..5065 | TCONS_00038443-exon-sc0001854-1575043694:4270..5065 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1491911889:5251..5475 | TCONS_00038443-exon-sc0001854-1491911889:5251..5475 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1510915933:5251..5475 | TCONS_00038443-exon-sc0001854-1510915933:5251..5475 | Clytia hemisphaerica | exon |
| TCONS_00038443-exon-sc0001854-1575043694:5251..5475 | TCONS_00038443-exon-sc0001854-1575043694:5251..5475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001854 | supercontig | sc0001854:3734..5475 + |
Blast
The following BLAST results are available for this feature:
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